Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008713

Physical Location & Seq

Genomic Coordinates Forward (+)

16130669 .. 16134498

Gene Structure 3830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAAATCTTTGAGAGCCCTGAGGCTCCTCTCTTCCAAACCCACCAACACCACTCCATCCCCAACCTTCCTCCTCCTCCGCTTCTACGCCGCCCAACCCCAACAATCCGATCCCACCCACACCCCATCCTCCTCAGAATCCGACGCCGAAAACAGCTTCGACAGTACCCACTACGACTACCCACCACCTTGGGACGACAAGTACAGAAGCAAAGCCGATAGATTGGTACCCGGGGATGAGGCCCACAAAGCAAAGCTGAGGTTTTTGAAGGAGGAGGAGGACGAGAGGAAGCGGAGGCTGCTCGCTAAGGCGCTGCTTGAGGCGGCGCTGGAGAGGGGAGATGAGGAGGAGTCGGACGGTGAGGAGGAGGTGGTCAAGGAGGAGGACCAGAAGTCGTTGACGGTTGGGATTATTGGGGCTCCCAATGCCGGAAAGTCTGCGCTGACGAATTACATGGTTGGAACAAAGGTTTCTGCTGTTTCACGGAAGACAAACACAACTACTCATGAAGTGTTAGGAGTTATAACAGAAGGAGACACCCAAATTTGTTTCTTTGATACTCCAGGTCTTTCAATAAACACCCGTGGAATTCCGTACAAGGATTTCAAGGTTCGTGTTGAAAGTGCTTGGAGCTCAGTTAATTTATATGATGTCCTCATAGTTATTTTTGACGTCCATAGGCATCTTACCAGACCTGATGTAAGGGTTATAAAAACGATCAAACGCATGGGAATGGAGCCACACCCAACACAAAAGCGAGTTTTATGTATGAACAAGGTTGATTTAGTTGAGAAGAAGAAAGACTTGTTAACGGTTGCCGAGCAATTTAAAGATCTACCCGGGTATGAAAGGCATTTCATGATTTCAGGTCTGAAGGGCTTTGGAGTTAAAGATCTTACTGAATACTTGATGCTTCAGGCAGTTAAAAGACCTTGGGAAGAAGATCCCTTCACCATGAGCGAGGAAGTTTTGAAGAATATATCACTAGAAGTTGTCCGAGAAAAGTTGTTAGACCATATACATCAGGAAATCCCATATGATATTGATCATCGTTTGATAGACTGGAAGGAGTTGCGAGATGGTTCTATTCGGATTGAACAGCATTTCATCACTCACAAACCAAGCCAACGCAAGATTCTTGTAGGAAAGAGGGGGTCTAAAATAGGGAGAATCGGCATGGAAGCCAATGAAGAGCTAAGATCCATCTTCAAGAGGGATGTGCATCTCTTTCTCCTGGTTAGACTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

416

Amino Acids

47.77

Weight (kDa)

7.26

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	132 - 304	1.4e-06	Elongation factor Tu GTP binding domain
MMR_HSR1	PF01926	134 - 259	1.2e-17	50S ribosome-binding GTPase
KH_2	PF07650	343 - 411	2.5e-09	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30960
fragaria_vesca	FvH4_3g12950 FvH4_3g12950
malus_domestica	MD05G1246900.v1.1 MD10G1227500.v1.1
prunus_persica	Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1
pyrus_communis	pycom05g22280 pycom10g19100
rosa_chinensis	RchiOBHm_Chr5g0021061
rosa_laevigata	RLG00000032580
rosa_multiflora	Rmu_ssc0000244.1_g000017
rosa_roxburghii	Rroxscaffold_1G00057400
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug05G0063900 Rorug05G0064000
rosa_samantha	Rh5AG153600 Rh5BG153300 Rh5CG166200 Rh5DG152900
rosa_wichuraiana	Rw5G013650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	524, 710
AatII	GACGTC	1 cut(s)	675
Acc65I	GGTACC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	226
AciI	CCGC	4 cut(s)	79, 90, 292, 323
AclWI	GGATC	3 cut(s)	104, 938, 1194
AcsI	RAATTY	2 cut(s)	543, 588
AcuI	CTGAAG	2 cut(s)	893, 899
AcyI	GRCGYC	2 cut(s)	144, 672
AfaI	GTAC	4 cut(s)	166, 203, 228, 596
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	7 cut(s)	268, 573, 607, 620, 973, 1097, 1210
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	562, 1233
AjuI	GAANNNNNNNTTGG	2 cut(s)	1119, 1151
AluBI	AGCT	4 cut(s)	156, 256, 633, 1195
AluI	AGCT	4 cut(s)	156, 256, 633, 1195
Alw21I	GWGCWC	1 cut(s)	635
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	3 cut(s)	104, 938, 1194
Ama87I	CYCGRG	2 cut(s)	230, 839
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	298, 313
ApoI	RAATTY	2 cut(s)	543, 588
Asp718I	GGTACC	1 cut(s)	226
AspLEI	GCGC	3 cut(s)	313, 328, 442
AspS9I	GGNCC	2 cut(s)	241, 385
AsuC2I	CCSGG	4 cut(s)	231, 232, 840, 841
AsuHPI	GGTGA	2 cut(s)	371, 943
AvaI	CYCGRG	2 cut(s)	230, 839
AvaII	GGWCC	1 cut(s)	385
AxyI	CCTNAGG	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	3 cut(s)	19, 421, 635
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	635
BbvCI	CCTCAGC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	285, 300
BccI	CCATC	4 cut(s)	64, 133, 1073, 1211
BciT130I	CCWGG	2 cut(s)	564, 1235
BclI	TGATCA	1 cut(s)	1045
BcnI	CCSGG	4 cut(s)	231, 232, 840, 841
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	1 cut(s)	986
BfoI	RGCGCY	2 cut(s)	314, 329
BglII	AGATCT	2 cut(s)	832, 892
BisI	GCNGC	4 cut(s)	90, 299, 314, 324
BlsI	GCNGC	4 cut(s)	91, 300, 315, 325
Bme1390I	CCNGG	6 cut(s)	231, 232, 564, 840, 841, 1235
Bme18I	GGWCC	1 cut(s)	385
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmeT110I	CYCGRG	2 cut(s)	230, 839
BmgT120I	GGNCC	2 cut(s)	241, 385
BmiI	GGNNCC	4 cut(s)	26, 228, 420, 738
BmrFI	CCNGG	6 cut(s)	231, 232, 564, 840, 841, 1235
BmsI	GCATC	3 cut(s)	691, 900, 1231
BpiI	GAAGAC	1 cut(s)	494
BpmI	CTGGAG	2 cut(s)	350, 546
Bpu10I	CCTNAGC	2 cut(s)	257, 306
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	4 cut(s)	231, 232, 840, 841
BsaBI	GATNNNNATC	2 cut(s)	1044, 1221
BsaHI	GRCGYC	2 cut(s)	144, 672
BsaJI	CCNNGG	6 cut(s)	188, 230, 231, 583, 839, 932
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	1067
Bse21I	CCTNAGG	1 cut(s)	20
Bse8I	GATNNNNATC	2 cut(s)	1044, 1221
BseBI	CCWGG	2 cut(s)	564, 1235
BseDI	CCNNGG	6 cut(s)	188, 230, 231, 583, 839, 932
BseGI	GGATG	4 cut(s)	56, 125, 241, 1222
BseJI	GATNNNNATC	2 cut(s)	1044, 1221
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	4 cut(s)	11, 147, 248, 648
BseNI	ACTGG	1 cut(s)	1067
BseXI	GCAGC	2 cut(s)	285, 300
BshFI	GGCC	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	635
BsiHKCI	CYCGRG	2 cut(s)	230, 839
BsiSI	CCGG	3 cut(s)	231, 429, 840
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	242
BsoBI	CYCGRG	2 cut(s)	230, 839
Bsp1286I	GDGCHC	3 cut(s)	19, 421, 635
Bsp143I	GATC	7 cut(s)	109, 717, 832, 892, 943, 1045, 1199
BspACI	CCGC	4 cut(s)	79, 90, 292, 323
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	4 cut(s)	12, 146, 249, 647
BspHI	TCATGA	2 cut(s)	505, 858
BspLI	GGNNCC	4 cut(s)	26, 228, 420, 738
BspPI	GGATC	3 cut(s)	104, 938, 1194
BspQI	GCTCTTC	1 cut(s)	1185
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	1067
BssECI	CCNNGG	6 cut(s)	188, 230, 231, 583, 839, 932
BssMI	GATC	7 cut(s)	109, 717, 832, 892, 943, 1045, 1199
BssNI	GRCGYC	2 cut(s)	144, 672
BssT1I	CCWWGG	2 cut(s)	188, 932
Bst2UI	CCWGG	2 cut(s)	564, 1235
Bst4CI	ACNGT	4 cut(s)	164, 359, 403, 814
Bst6I	CTCTTC	2 cut(s)	37, 1185
BstACI	GRCGYC	2 cut(s)	144, 672
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	6 cut(s)	20, 133, 257, 306, 634, 1196
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	4 cut(s)	56, 125, 241, 1222
BstH2I	RGCGCY	2 cut(s)	314, 329
BstHHI	GCGC	3 cut(s)	313, 328, 442
BstKTI	GATC	7 cut(s)	112, 720, 835, 895, 946, 1048, 1202
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	7 cut(s)	109, 717, 832, 892, 943, 1045, 1199
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 298, 425
BstNI	CCWGG	2 cut(s)	564, 1235
BstSCI	CCNGG	6 cut(s)	229, 230, 562, 838, 839, 1233
BstV1I	GCAGC	2 cut(s)	285, 300
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	4 cut(s)	832, 892, 943, 1199
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	4 cut(s)	832, 892, 943, 1199
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	4 cut(s)	56, 125, 241, 1222
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	2 cut(s)	505, 858
CfoI	GCGC	3 cut(s)	313, 328, 442
Cfr13I	GGNCC	2 cut(s)	241, 385
Cfr9I	CCCGGG	2 cut(s)	230, 839
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	165, 202, 227, 595
CviAII	CATG	6 cut(s)	454, 506, 727, 859, 955, 1177
CviQI	GTAC	4 cut(s)	165, 202, 227, 595
DdeI	CTNAG	6 cut(s)	20, 133, 257, 306, 634, 1196
DpnI	GATC	7 cut(s)	111, 719, 834, 894, 945, 1047, 1201
DpnII	GATC	7 cut(s)	109, 717, 832, 892, 943, 1045, 1199
DraI	TTTAAA	1 cut(s)	829
DriI	GACNNNNNGTC	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	37, 1185
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	2 cut(s)	37, 1185
Ecl136II	GAGCTC	1 cut(s)	633
Eco130I	CCWWGG	2 cut(s)	188, 932
Eco24I	GRGCYC	3 cut(s)	19, 421, 635
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	633
Eco57I	CTGAAG	2 cut(s)	893, 899
Eco81I	CCTNAGG	1 cut(s)	20
Eco88I	CYCGRG	2 cut(s)	230, 839
EcoICRI	GAGCTC	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	588
EcoRII	CCWGG	2 cut(s)	562, 1233
EcoT14I	CCWWGG	2 cut(s)	188, 932
EcoT38I	GRGCYC	3 cut(s)	19, 421, 635
ErhI	CCWWGG	2 cut(s)	188, 932
FaeI	CATG	6 cut(s)	457, 509, 730, 862, 958, 1180
FalI	AAGNNNNNCTT	2 cut(s)	788, 820
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	6 cut(s)	453, 505, 726, 858, 954, 1176
FauNDI	CATATG	1 cut(s)	1036
FbaI	TGATCA	1 cut(s)	1045
Fnu4HI	GCNGC	4 cut(s)	90, 299, 314, 324
FokI	GGATG	4 cut(s)	43, 112, 248, 1229
FriOI	GRGCYC	3 cut(s)	19, 421, 635
Fsp4HI	GCNGC	4 cut(s)	90, 299, 314, 324
FspBI	CTAG	1 cut(s)	986
GlaI	GCGC	3 cut(s)	312, 327, 441
GluI	GCNGC	4 cut(s)	90, 299, 314, 324
GsuI	CTGGAG	2 cut(s)	350, 546
HaeII	RGCGCY	2 cut(s)	314, 329
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	3 cut(s)	231, 429, 840
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	3 cut(s)	313, 328, 442
Hin1I	GRCGYC	2 cut(s)	144, 672
Hin1II	CATG	6 cut(s)	457, 509, 730, 862, 958, 1180
Hin6I	GCGC	3 cut(s)	311, 326, 440
HinP1I	GCGC	3 cut(s)	311, 326, 440
HincII	GTYRAC	2 cut(s)	399, 810
HindII	GTYRAC	2 cut(s)	399, 810
HinfI	GANTC	4 cut(s)	137, 350, 1135, 1170
HpaI	GTTAAC	1 cut(s)	810
HpaII	CCGG	3 cut(s)	231, 429, 840
HphI	GGTGA	2 cut(s)	371, 943
Hpy166II	GTNNAC	2 cut(s)	399, 810
Hpy188I	TCNGA	7 cut(s)	109, 136, 142, 355, 873, 998, 1092
Hpy188III	TCNNGA	4 cut(s)	506, 859, 1025, 1210
Hpy8I	GTNNAC	2 cut(s)	399, 810
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	6 cut(s)	76, 262, 524, 868, 958, 1060
HpyCH4III	ACNGT	4 cut(s)	164, 359, 403, 814
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	1 cut(s)	1222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 298, 425
HpyF3I	CTNAG	6 cut(s)	20, 133, 257, 306, 634, 1196
HpySE526I	ACGT	1 cut(s)	672
Hsp92I	GRCGYC	2 cut(s)	144, 672
Hsp92II	CATG	6 cut(s)	457, 509, 730, 862, 958, 1180
HspAI	GCGC	3 cut(s)	311, 326, 440
KpnI	GGTACC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	1045
KspAI	GTTAAC	1 cut(s)	810
Kzo9I	GATC	7 cut(s)	109, 717, 832, 892, 943, 1045, 1199
LguI	GCTCTTC	1 cut(s)	1185
LmnI	GCTCC	4 cut(s)	30, 424, 630, 736
Lsp1109I	GCAGC	2 cut(s)	285, 300
LweI	GCATC	3 cut(s)	691, 900, 1231
MaeI	CTAG	1 cut(s)	986
MaeII	ACGT	1 cut(s)	672
MalI	GATC	7 cut(s)	111, 719, 834, 894, 945, 1047, 1201
MboI	GATC	7 cut(s)	109, 717, 832, 892, 943, 1045, 1199
MboII	GAAGA	9 cut(s)	24, 499, 805, 808, 950, 953, 985, 1198, 1202
MflI	RGATCY	4 cut(s)	832, 892, 943, 1199
MhlI	GDGCHC	3 cut(s)	19, 421, 635
MluCI	AATT	5 cut(s)	448, 543, 588, 640, 824
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	3 cut(s)	165, 333, 439
MseI	TTAA	6 cut(s)	639, 809, 828, 888, 924, 1245
MslI	CAYNNNNRTG	1 cut(s)	731
MspI	CCGG	3 cut(s)	231, 429, 840
MspR9I	CCNGG	6 cut(s)	231, 232, 564, 840, 841, 1235
MvaI	CCWGG	2 cut(s)	564, 1235
MwoI	GCNNNNNNNGC	3 cut(s)	248, 298, 425
NciI	CCSGG	4 cut(s)	231, 232, 840, 841
NdeI	CATATG	1 cut(s)	1036
NdeII	GATC	7 cut(s)	109, 717, 832, 892, 943, 1045, 1199
NlaIII	CATG	6 cut(s)	457, 509, 730, 862, 958, 1180
NlaIV	GGNNCC	4 cut(s)	26, 228, 420, 738
NmeAIII	GCCGAG	1 cut(s)	844
PagI	TCATGA	2 cut(s)	505, 858
PciSI	GCTCTTC	1 cut(s)	1185
PfeI	GAWTC	3 cut(s)	137, 1135, 1170
PkrI	GCNGC	4 cut(s)	91, 300, 315, 325
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PsiI	TTATAA	2 cut(s)	524, 710
Psp124BI	GAGCTC	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	562, 1233
PspGI	CCWGG	2 cut(s)	562, 1233
PspN4I	GGNNCC	4 cut(s)	26, 228, 420, 738
PspPI	GGNCC	2 cut(s)	241, 385
PsuI	RGATCY	4 cut(s)	832, 892, 943, 1199
RsaI	GTAC	4 cut(s)	166, 203, 228, 596
RsaNI	GTAC	4 cut(s)	165, 202, 227, 595
RseI	CAYNNNNRTG	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	1185
SaqAI	TTAA	6 cut(s)	639, 809, 828, 888, 924, 1245
SatI	GCNGC	4 cut(s)	90, 299, 314, 324
Sau3AI	GATC	7 cut(s)	109, 717, 832, 892, 943, 1045, 1199
Sau96I	GGNCC	2 cut(s)	241, 385
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	6 cut(s)	231, 232, 564, 840, 841, 1235
SduI	GDGCHC	3 cut(s)	19, 421, 635
SfaNI	GCATC	3 cut(s)	691, 900, 1231
SinI	GGWCC	1 cut(s)	385
SmaI	CCCGGG	2 cut(s)	232, 841
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	448, 543, 588, 640, 824
SsiI	CCGC	4 cut(s)	79, 90, 292, 323
SspMI	CTAG	1 cut(s)	986
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	6 cut(s)	229, 230, 562, 838, 839, 1233
StyI	CCWWGG	2 cut(s)	188, 932
TaaI	ACNGT	4 cut(s)	164, 359, 403, 814
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	1 cut(s)	159
TasI	AATT	5 cut(s)	448, 543, 588, 640, 824
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	92, 326
TfiI	GAWTC	3 cut(s)	137, 1135, 1170
Tru1I	TTAA	6 cut(s)	639, 809, 828, 888, 924, 1245
Tru9I	TTAA	6 cut(s)	639, 809, 828, 888, 924, 1245
TseI	GCWGC	2 cut(s)	298, 313
TspDTI	ATGAA	7 cut(s)	17, 522, 785, 847, 861, 1096, 1203
TspGWI	ACGGA	2 cut(s)	499, 582
TspMI	CCCGGG	2 cut(s)	230, 839
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	2 cut(s)	543, 588
XmaI	CCCGGG	2 cut(s)	230, 839
XspI	CTAG	1 cut(s)	986
ZraI	GACGTC	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.