Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008713

Physical Location & Seq

Genomic Coordinates Forward (+)

15484860 .. 15488518

Gene Structure 3659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG166200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAAATCTTTGAGAGCCCTGAGGCTCCTCTCTTCCAAACCCACCAACACCACTCCATCCCCAACCTTCCTCCTCCTCCGCCGCCGCCGCTTCTACGCCGCCCAACCCCAACAATCCGATCCCACCCACACCCCATCCTCCTCAGAATCCGACGCCGAAAACAGCTTCGACAGTACCCACTACGACTTACCCACCACCGCGTCGGATTCCAAACCCCAAAACCCGAGTTGGGACGAGAAGTACAGAAGCAAAGCCGATAGATTGGTACCCGGGGATGAGGCCCACAAAGCAAAGCTGAGGTTTTTGAAGGAGGAGGAGGACGAAAGGAAGCGGAGGCTGCTCGCTAAGGCGCTGCTTGAGGCGGCGCTGGAGAGGGGAGATGAGGAGGAATCGGACGGTGAGGAGGAGGTGGTCAAGGAGGAGGACCAGAAGTCGTTGACGGTTGGGATTATTGGGGCTCCCAATGCCGGAAAGTCTGCGCTGACGAATTACATGGTTGGAACAAAGGTTTCTGCTGTTTCACGGAAGACAAACACAACTACTCATGAAGTGTTGGGAGTTATAACAGAAGGAGACACCCAAATTTGTTTCTTTGATACTCCAGGTCTTTCAATAAACACCCGTGGAATTCCGTACAAGGATTTCAAGGTTCGTGTTGAAAGTGCTTGGAGCTCAGTTAATTTATATGATGTCCTCATAGTTATTTTTGACGTCCATAGGCATCTTACCAGACCTGATGTAAGGGTTATAAAAACGATCAAACGCATGGGAATGGAGCCACACCCAACACAAAAGCGAGTTTTATGTATGAACAAGGTTGATTTAGTTGAGAAGAAGAAAGACTTGTTAACGGTTGCTGAGCAATTTAAAGATCTTCCCGGGTATGAAAGGCATTTCATGATTTCAGGTCTGAAGGGCTTTGGAGTTAAAGATCTTACTGAATACTTGATGCTTCAGGCATTTAAAAGACCTTGGGAAGAAGACCCCTTCACCATGAGCGAGGAAGTTTTGAAGAATATATCACTAGAAGTTGTCCGAGAAAAGTTGTTAGACCATATACATCAGGAAATCCCATATGATATTGATCATCGTTTGATAGACTGGAAGGAGTTGCGAGATGGTTCTATTCGGATTGAACAGCATTTCATCACTCACAAACCAAGCCAACGCAAGATTCTTGTAGGAAAGAGGGGGTCTAAAATAGGGAGAATCGGCATGGAAGCCAATGAAGAGCTAAGATCCATCTTCAAGAGGGATGTGCATCTCTTTCTCCTGGTTAGACTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

429

Amino Acids

49.27

Weight (kDa)

8.54

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	145 - 317	1.5e-06	Elongation factor Tu GTP binding domain
MMR_HSR1	PF01926	147 - 272	1.2e-17	50S ribosome-binding GTPase
KH_2	PF07650	356 - 424	2.6e-09	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30960
fragaria_vesca	FvH4_3g12950 FvH4_3g12950
malus_domestica	MD05G1246900.v1.1 MD10G1227500.v1.1
prunus_persica	Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1
pyrus_communis	pycom05g22280 pycom10g19100
rosa_chinensis	RchiOBHm_Chr5g0021061
rosa_laevigata	RLG00000032580
rosa_multiflora	Rmu_ssc0000244.1_g000017
rosa_roxburghii	Rroxscaffold_1G00057400
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug05G0063900 Rorug05G0064000
rosa_samantha	Rh5AG153600 Rh5BG153300 Rh5CG166200 Rh5DG152900
rosa_wichuraiana	Rw5G013650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	563, 749
AatII	GACGTC	1 cut(s)	714
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AccII	CGCG	1 cut(s)	200
AciI	CCGC	8 cut(s)	79, 82, 85, 88, 99, 198, 331, 362
AclWI	GGATC	2 cut(s)	113, 1233
AcsI	RAATTY	2 cut(s)	582, 627
AcuI	CTGAAG	2 cut(s)	932, 938
AcyI	GRCGYC	2 cut(s)	153, 711
AfaI	GTAC	4 cut(s)	175, 242, 267, 635
AfiI	CCNNNNNNNGG	2 cut(s)	229, 467
AgsI	TTSAA	7 cut(s)	307, 612, 646, 659, 1012, 1136, 1249
AhdI	GACNNNNNGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	601, 1272
AjuI	GAANNNNNNNTTGG	2 cut(s)	1158, 1190
AluBI	AGCT	4 cut(s)	165, 295, 672, 1234
AluI	AGCT	4 cut(s)	165, 295, 672, 1234
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	2 cut(s)	113, 1233
Ama87I	CYCGRG	3 cut(s)	223, 269, 878
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	337, 352
ApoI	RAATTY	2 cut(s)	582, 627
Asp718I	GGTACC	1 cut(s)	265
AspLEI	GCGC	3 cut(s)	352, 367, 481
AspS9I	GGNCC	2 cut(s)	280, 424
AsuC2I	CCSGG	4 cut(s)	270, 271, 879, 880
AsuHPI	GGTGA	2 cut(s)	410, 982
AvaI	CYCGRG	3 cut(s)	223, 269, 878
AvaII	GGWCC	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	3 cut(s)	19, 460, 674
BbsI	GAAGAC	2 cut(s)	533, 987
Bbv12I	GWGCWC	1 cut(s)	674
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	324, 339
BccI	CCATC	4 cut(s)	64, 142, 1112, 1250
BciT130I	CCWGG	2 cut(s)	603, 1274
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	4 cut(s)	270, 271, 879, 880
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	1 cut(s)	1025
BfoI	RGCGCY	2 cut(s)	353, 368
BglII	AGATCT	2 cut(s)	871, 931
BisI	GCNGC	7 cut(s)	82, 85, 88, 99, 338, 353, 363
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	7 cut(s)	83, 86, 89, 100, 339, 354, 364
Bme1390I	CCNGG	6 cut(s)	270, 271, 603, 879, 880, 1274
Bme18I	GGWCC	1 cut(s)	424
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmeT110I	CYCGRG	3 cut(s)	223, 269, 878
BmgT120I	GGNCC	2 cut(s)	280, 424
BmiI	GGNNCC	4 cut(s)	26, 267, 459, 777
BmrFI	CCNGG	6 cut(s)	270, 271, 603, 879, 880, 1274
BmsI	GCATC	3 cut(s)	730, 939, 1270
BpiI	GAAGAC	2 cut(s)	533, 987
BpmI	CTGGAG	2 cut(s)	389, 585
Bpu10I	CCTNAGC	2 cut(s)	296, 345
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	4 cut(s)	270, 271, 879, 880
BsaBI	GATNNNNATC	2 cut(s)	1083, 1260
BsaHI	GRCGYC	2 cut(s)	153, 711
BsaJI	CCNNGG	5 cut(s)	269, 270, 622, 878, 971
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 467
Bse1I	ACTGG	1 cut(s)	1106
Bse21I	CCTNAGG	1 cut(s)	20
Bse8I	GATNNNNATC	2 cut(s)	1083, 1260
BseBI	CCWGG	2 cut(s)	603, 1274
BseDI	CCNNGG	5 cut(s)	269, 270, 622, 878, 971
BseGI	GGATG	4 cut(s)	56, 134, 280, 1261
BseJI	GATNNNNATC	2 cut(s)	1083, 1260
BseLI	CCNNNNNNNGG	2 cut(s)	229, 467
BseMII	CTCAG	5 cut(s)	11, 156, 287, 687, 849
BseNI	ACTGG	1 cut(s)	1106
BseXI	GCAGC	2 cut(s)	324, 339
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	674
BsiHKCI	CYCGRG	3 cut(s)	223, 269, 878
BsiSI	CCGG	3 cut(s)	270, 468, 879
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	229, 467
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	281
BsoBI	CYCGRG	3 cut(s)	223, 269, 878
Bsp1286I	GDGCHC	3 cut(s)	19, 460, 674
Bsp143I	GATC	6 cut(s)	118, 756, 871, 931, 1084, 1238
Bsp1720I	GCTNAGC	1 cut(s)	858
BspACI	CCGC	8 cut(s)	79, 82, 85, 88, 99, 198, 331, 362
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	5 cut(s)	12, 155, 288, 686, 850
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	2 cut(s)	544, 897
BspLI	GGNNCC	4 cut(s)	26, 267, 459, 777
BspPI	GGATC	2 cut(s)	113, 1233
BspQI	GCTCTTC	1 cut(s)	1224
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	1106
BssECI	CCNNGG	5 cut(s)	269, 270, 622, 878, 971
BssMI	GATC	6 cut(s)	118, 756, 871, 931, 1084, 1238
BssNI	GRCGYC	2 cut(s)	153, 711
BssT1I	CCWWGG	1 cut(s)	971
Bst2UI	CCWGG	2 cut(s)	603, 1274
Bst4CI	ACNGT	4 cut(s)	173, 398, 442, 853
Bst6I	CTCTTC	2 cut(s)	37, 1224
BstACI	GRCGYC	2 cut(s)	153, 711
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	7 cut(s)	20, 142, 296, 345, 673, 858, 1235
BstDSI	CCRYGG	1 cut(s)	622
BstF5I	GGATG	4 cut(s)	56, 134, 280, 1261
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	2 cut(s)	353, 368
BstHHI	GCGC	3 cut(s)	352, 367, 481
BstKTI	GATC	6 cut(s)	121, 759, 874, 934, 1087, 1241
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	6 cut(s)	118, 756, 871, 931, 1084, 1238
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 287, 337, 464
BstNI	CCWGG	2 cut(s)	603, 1274
BstSCI	CCNGG	6 cut(s)	268, 269, 601, 877, 878, 1272
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	324, 339
BstV2I	GAAGAC	2 cut(s)	533, 987
BstX2I	RGATCY	3 cut(s)	871, 931, 1238
BstYI	RGATCY	3 cut(s)	871, 931, 1238
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	4 cut(s)	56, 134, 280, 1261
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	2 cut(s)	544, 897
CfoI	GCGC	3 cut(s)	352, 367, 481
Cfr13I	GGNCC	2 cut(s)	280, 424
Cfr9I	CCCGGG	2 cut(s)	269, 878
CseI	GACGC	2 cut(s)	161, 189
Csp6I	GTAC	4 cut(s)	174, 241, 266, 634
CviAII	CATG	6 cut(s)	493, 545, 766, 898, 994, 1216
CviQI	GTAC	4 cut(s)	174, 241, 266, 634
DdeI	CTNAG	7 cut(s)	20, 142, 296, 345, 673, 858, 1235
DpnI	GATC	6 cut(s)	120, 758, 873, 933, 1086, 1240
DpnII	GATC	6 cut(s)	118, 756, 871, 931, 1084, 1238
DraI	TTTAAA	2 cut(s)	868, 964
DriI	GACNNNNNGTC	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	37, 1224
Eam1105I	GACNNNNNGTC	1 cut(s)	430
EarI	CTCTTC	2 cut(s)	37, 1224
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	672
Eco130I	CCWWGG	1 cut(s)	971
Eco24I	GRGCYC	3 cut(s)	19, 460, 674
Eco47I	GGWCC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	672
Eco57I	CTGAAG	2 cut(s)	932, 938
Eco81I	CCTNAGG	1 cut(s)	20
Eco88I	CYCGRG	3 cut(s)	223, 269, 878
EcoICRI	GAGCTC	1 cut(s)	672
EcoRI	GAATTC	1 cut(s)	627
EcoRII	CCWGG	2 cut(s)	601, 1272
EcoT14I	CCWWGG	1 cut(s)	971
EcoT38I	GRGCYC	3 cut(s)	19, 460, 674
ErhI	CCWWGG	1 cut(s)	971
FaeI	CATG	6 cut(s)	496, 548, 769, 901, 997, 1219
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	6 cut(s)	492, 544, 765, 897, 993, 1215
FauNDI	CATATG	1 cut(s)	1075
FbaI	TGATCA	1 cut(s)	1084
Fnu4HI	GCNGC	7 cut(s)	82, 85, 88, 99, 338, 353, 363
FokI	GGATG	4 cut(s)	43, 121, 287, 1268
FriOI	GRGCYC	3 cut(s)	19, 460, 674
Fsp4HI	GCNGC	7 cut(s)	82, 85, 88, 99, 338, 353, 363
FspBI	CTAG	1 cut(s)	1025
GlaI	GCGC	3 cut(s)	351, 366, 480
GluI	GCNGC	7 cut(s)	82, 85, 88, 99, 338, 353, 363
GsuI	CTGGAG	2 cut(s)	389, 585
HaeII	RGCGCY	2 cut(s)	353, 368
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	3 cut(s)	270, 468, 879
HgaI	GACGC	2 cut(s)	161, 189
HhaI	GCGC	3 cut(s)	352, 367, 481
Hin1I	GRCGYC	2 cut(s)	153, 711
Hin1II	CATG	6 cut(s)	496, 548, 769, 901, 997, 1219
Hin6I	GCGC	3 cut(s)	350, 365, 479
HinP1I	GCGC	3 cut(s)	350, 365, 479
HincII	GTYRAC	2 cut(s)	438, 849
HindII	GTYRAC	2 cut(s)	438, 849
HinfI	GANTC	5 cut(s)	146, 206, 389, 1174, 1209
HpaI	GTTAAC	1 cut(s)	849
HpaII	CCGG	3 cut(s)	270, 468, 879
HphI	GGTGA	2 cut(s)	410, 982
Hpy166II	GTNNAC	2 cut(s)	438, 849
Hpy188I	TCNGA	8 cut(s)	118, 145, 151, 205, 394, 912, 1037, 1131
Hpy188III	TCNNGA	4 cut(s)	545, 898, 1064, 1249
Hpy8I	GTNNAC	2 cut(s)	438, 849
Hpy99I	CGWCG	2 cut(s)	155, 205
HpyAV	CCTTC	6 cut(s)	76, 301, 563, 907, 997, 1099
HpyCH4III	ACNGT	4 cut(s)	173, 398, 442, 853
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	1 cut(s)	1261
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 287, 337, 464
HpyF3I	CTNAG	7 cut(s)	20, 142, 296, 345, 673, 858, 1235
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	2 cut(s)	153, 711
Hsp92II	CATG	6 cut(s)	496, 548, 769, 901, 997, 1219
HspAI	GCGC	3 cut(s)	350, 365, 479
KpnI	GGTACC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	1084
KspAI	GTTAAC	1 cut(s)	849
Kzo9I	GATC	6 cut(s)	118, 756, 871, 931, 1084, 1238
LguI	GCTCTTC	1 cut(s)	1224
LmnI	GCTCC	4 cut(s)	30, 463, 669, 775
Lsp1109I	GCAGC	2 cut(s)	324, 339
LweI	GCATC	3 cut(s)	730, 939, 1270
MaeI	CTAG	1 cut(s)	1025
MaeII	ACGT	1 cut(s)	711
MalI	GATC	6 cut(s)	120, 758, 873, 933, 1086, 1240
MboI	GATC	6 cut(s)	118, 756, 871, 931, 1084, 1238
MflI	RGATCY	3 cut(s)	871, 931, 1238
MhlI	GDGCHC	3 cut(s)	19, 460, 674
MluCI	AATT	5 cut(s)	487, 582, 627, 679, 863
MmeI	TCCRAC	3 cut(s)	174, 183, 478
MseI	TTAA	6 cut(s)	678, 848, 867, 927, 963, 1284
MslI	CAYNNNNRTG	1 cut(s)	770
MspI	CCGG	3 cut(s)	270, 468, 879
MspR9I	CCNGG	6 cut(s)	270, 271, 603, 879, 880, 1274
MvaI	CCWGG	2 cut(s)	603, 1274
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	87, 287, 337, 464
NciI	CCSGG	4 cut(s)	270, 271, 879, 880
NdeI	CATATG	1 cut(s)	1075
NdeII	GATC	6 cut(s)	118, 756, 871, 931, 1084, 1238
NlaIII	CATG	6 cut(s)	496, 548, 769, 901, 997, 1219
NlaIV	GGNNCC	4 cut(s)	26, 267, 459, 777
PagI	TCATGA	2 cut(s)	544, 897
PciSI	GCTCTTC	1 cut(s)	1224
PfeI	GAWTC	5 cut(s)	146, 206, 389, 1174, 1209
PkrI	GCNGC	7 cut(s)	83, 86, 89, 100, 339, 354, 364
PsiI	TTATAA	2 cut(s)	563, 749
Psp124BI	GAGCTC	1 cut(s)	674
Psp6I	CCWGG	2 cut(s)	601, 1272
PspGI	CCWGG	2 cut(s)	601, 1272
PspN4I	GGNNCC	4 cut(s)	26, 267, 459, 777
PspPI	GGNCC	2 cut(s)	280, 424
PsuI	RGATCY	3 cut(s)	871, 931, 1238
RsaI	GTAC	4 cut(s)	175, 242, 267, 635
RsaNI	GTAC	4 cut(s)	174, 241, 266, 634
RseI	CAYNNNNRTG	1 cut(s)	770
SacI	GAGCTC	1 cut(s)	674
SapI	GCTCTTC	1 cut(s)	1224
SaqAI	TTAA	6 cut(s)	678, 848, 867, 927, 963, 1284
SatI	GCNGC	7 cut(s)	82, 85, 88, 99, 338, 353, 363
Sau3AI	GATC	6 cut(s)	118, 756, 871, 931, 1084, 1238
Sau96I	GGNCC	2 cut(s)	280, 424
ScrFI	CCNGG	6 cut(s)	270, 271, 603, 879, 880, 1274
SduI	GDGCHC	3 cut(s)	19, 460, 674
SfaNI	GCATC	3 cut(s)	730, 939, 1270
SinI	GGWCC	1 cut(s)	424
SmaI	CCCGGG	2 cut(s)	271, 880
SmiMI	CAYNNNNRTG	1 cut(s)	770
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	5 cut(s)	487, 582, 627, 679, 863
SsiI	CCGC	8 cut(s)	79, 82, 85, 88, 99, 198, 331, 362
SspMI	CTAG	1 cut(s)	1025
SstI	GAGCTC	1 cut(s)	674
StyD4I	CCNGG	6 cut(s)	268, 269, 601, 877, 878, 1272
StyI	CCWWGG	1 cut(s)	971
TaaI	ACNGT	4 cut(s)	173, 398, 442, 853
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	487, 582, 627, 679, 863
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	5 cut(s)	84, 87, 90, 101, 365
TfiI	GAWTC	5 cut(s)	146, 206, 389, 1174, 1209
Tru1I	TTAA	6 cut(s)	678, 848, 867, 927, 963, 1284
Tru9I	TTAA	6 cut(s)	678, 848, 867, 927, 963, 1284
TseI	GCWGC	2 cut(s)	337, 352
TspDTI	ATGAA	7 cut(s)	17, 561, 824, 886, 900, 1135, 1242
TspGWI	ACGGA	2 cut(s)	538, 621
TspMI	CCCGGG	2 cut(s)	269, 878
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	2 cut(s)	582, 627
XmaI	CCCGGG	2 cut(s)	269, 878
XspI	CTAG	1 cut(s)	1025
ZraI	GACGTC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.