Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008713

Physical Location & Seq

Genomic Coordinates Forward (+)

6361425 .. 6367287

Gene Structure 5863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G117500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGAAAGCTTTGAGAGCTCTGAGAACTCTCTCTTCGAAACCCAGAAAAACCCCATTAAACCCAACCTTCTTTCACAGGTTCTACGCAGCTCAACCTCAAGAAGACGATTCCAGCCACACCCCATCCCTCTCGGACTCTGAAAATGGTTCAGACTCAGTCTTTGACAGTACCCATTACGACATACCAACCATTAGTTCAGATTCTAAGCCGAAAATCCCTCAGAAGCCCACTTGGAACACCAAATACAGATCAAAAGCTGATGAATTGATTGCCCAAAAGAAAAAACCTGATGATTTGATATTTAAGAACAGCTCGCTCGCGAAGAAGCTTCTTGAAGCGGCGGTATGTTTGCCATCAGACGATGAGGATGAGGAGGATGAGGAGGAAGTGGTCAAGGAGGAGGACCAGAAGGCGTTGTCGGTTGGGATAATAGGTGCCCCGAATGCCGGAAAGTCTGCACTGACGAATTATATGGTTGGGACTAAGGTTGCTGCTGTGTCACGGAAGACGAACACCACTACCCATGAAGTATTGGGAGTGATGACAAAAGGAGACACACAAATTTGTTTCTTTGATACTCCAGGAATTACATTAAGTAACAGAGGATGCCCTTACAAGGATTTCAAGGTTCGTGTAGAAAGTGCTTGGAGCTCAGTTAATTTATATGATGTGCTCATAGTTATTTTCGACGTCCATAGGCATCTTACCAGACCTGATGCAAGGGTTATAGGATTAATCAAGCGTATGGGAGCAGAAGCACACCCAATACAAAAGAGAGTTTTATGTATGAATAAGATTGATTTAGTTGAGAAGAAGAAAGATTTATTAACAGTTGCCGAGCAATTCAAAGATCTTCCTGGGTTTGAAAGGCATTTCATGATTTCGGGTCTAAAGGGATCTGGAGTGAAAGATCTTAATCAATACTTGATGGATCAGGCTGTCAAAAGATCTTGGGAGGAAGATCCATTCGTCATGACTGAGGAAGTAATGAAGAATATATCATTAGAAGTTGTCCGAGAAAGGCTGTTAGACCATGTCCATCAGGAAATCCCATACGGTATTGAACATCGGTTGATGGACTGGAAGGAGTTGCGAGATGGCTCTCTTCGGATTGAACAGCATCTTATCACTCCCAAATTAAGTCAACGCAAGATTCTTGTAGGAAAGAAGGGCTGTAAAATAGGGAGAATTGGCATGGAAGCTAATGAGGAGCTAAGGTCCATCTTCAAGAGGGATGTCCACCTCATTCTCCAGGTAGTGACGAGCTATGATCCATCACAAGATGGAAGTGCACCTTATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

435

Amino Acids

49.13

Weight (kDa)

7.22

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30960
fragaria_vesca	FvH4_3g12950 FvH4_3g12950
malus_domestica	MD05G1246900.v1.1 MD10G1227500.v1.1
prunus_persica	Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1
pyrus_communis	pycom05g22280 pycom10g19100
rosa_chinensis	RchiOBHm_Chr5g0021061
rosa_laevigata	RLG00000032580
rosa_multiflora	Rmu_ssc0000244.1_g000017
rosa_roxburghii	Rroxscaffold_1G00057400
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug05G0063900 Rorug05G0064000
rosa_samantha	Rh5AG153600 Rh5BG153300 Rh5CG166200 Rh5DG152900
rosa_wichuraiana	Rw5G013650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	434
AccII	CGCG	1 cut(s)	320
AciI	CCGC	2 cut(s)	338, 341
AclWI	GGATC	4 cut(s)	904, 939, 956, 1265
AcsI	RAATTY	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	690
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	446, 616
AgsI	TTSAA	7 cut(s)	335, 625, 847, 866, 1064, 1115, 1228
AjnI	CCWGG	3 cut(s)	580, 856, 1251
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
Alw21I	GWGCWC	4 cut(s)	19, 653, 675, 1294
Alw26I	GTCTC	1 cut(s)	546
Alw44I	GTGCAC	1 cut(s)	1290
AlwI	GGATC	4 cut(s)	904, 939, 956, 1265
ApaLI	GTGCAC	1 cut(s)	1290
ApeKI	GCWGC	2 cut(s)	86, 491
ApoI	RAATTY	1 cut(s)	561
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AseI	ATTAAT	1 cut(s)	734
AspS9I	GGNCC	2 cut(s)	403, 1218
AsuII	TTCGAA	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	403, 1218
BaeGI	GKGCMC	2 cut(s)	439, 1294
BanI	GGYRCC	1 cut(s)	434
BanII	GRGCYC	2 cut(s)	19, 653
BbsI	GAAGAC	2 cut(s)	108, 512
Bbv12I	GWGCWC	4 cut(s)	19, 653, 675, 1294
BbvI	GCAGC	2 cut(s)	98, 478
BccI	CCATC	9 cut(s)	130, 361, 922, 1047, 1069, 1091, 1229, 1277, 1282
BciT130I	CCWGG	3 cut(s)	582, 858, 1253
BcoDI	GTCTC	1 cut(s)	546
BglII	AGATCT	3 cut(s)	850, 910, 947
BisI	GCNGC	3 cut(s)	87, 339, 492
BlsI	GCNGC	3 cut(s)	88, 340, 493
Bme1390I	CCNGG	3 cut(s)	582, 858, 1253
Bme18I	GGWCC	2 cut(s)	403, 1218
BmgT120I	GGNCC	2 cut(s)	403, 1218
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	3 cut(s)	582, 858, 1253
BmsI	GCATC	4 cut(s)	596, 706, 709, 1129
BpiI	GAAGAC	2 cut(s)	108, 512
BpmI	CTGGAG	3 cut(s)	564, 921, 1235
Bpu10I	CCTNAGC	1 cut(s)	1214
Bpu14I	TTCGAA	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	857
BsaXI	ACNNNNNCTCC	2 cut(s)	1202, 1232
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 616
Bse1I	ACTGG	1 cut(s)	1085
Bse8I	GATNNNNATC	1 cut(s)	915
BseBI	CCWGG	3 cut(s)	582, 858, 1253
BseDI	CCNNGG	1 cut(s)	857
BseGI	GGATG	5 cut(s)	122, 373, 382, 611, 1240
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	2 cut(s)	446, 616
BseMII	CTCAG	5 cut(s)	11, 168, 233, 666, 969
BseNI	ACTGG	1 cut(s)	1085
BseRI	GAGGAG	4 cut(s)	386, 395, 413, 1223
BseSI	GKGCMC	2 cut(s)	439, 1294
BseXI	GCAGC	2 cut(s)	98, 478
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	434
BsiHKAI	GWGCWC	4 cut(s)	19, 653, 675, 1294
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	2 cut(s)	446, 616
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	448
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1286I	GDGCHC	5 cut(s)	19, 439, 653, 675, 1294
Bsp143I	GATC	8 cut(s)	248, 850, 896, 910, 931, 947, 961, 1270
Bsp68I	TCGCGA	1 cut(s)	320
BspACI	CCGC	2 cut(s)	338, 341
BspCNI	CTCAG	5 cut(s)	12, 167, 232, 665, 970
BspFNI	CGCG	1 cut(s)	320
BspHI	TCATGA	2 cut(s)	876, 972
BspLI	GGNNCC	1 cut(s)	436
BspPI	GGATC	4 cut(s)	904, 939, 956, 1265
BspT104I	TTCGAA	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	1085
BssECI	CCNNGG	1 cut(s)	857
BssMI	GATC	8 cut(s)	248, 850, 896, 910, 931, 947, 961, 1270
BssNI	GRCGYC	1 cut(s)	690
Bst2UI	CCWGG	3 cut(s)	582, 858, 1253
Bst4CI	ACNGT	3 cut(s)	167, 832, 1058
Bst6I	CTCTTC	2 cut(s)	37, 1110
BstACI	GRCGYC	1 cut(s)	690
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	314, 318
BstDEI	CTNAG	8 cut(s)	20, 154, 204, 219, 483, 652, 978, 1214
BstF5I	GGATG	5 cut(s)	122, 373, 382, 611, 1240
BstFNI	CGCG	1 cut(s)	320
BstKTI	GATC	8 cut(s)	251, 853, 899, 913, 934, 950, 964, 1273
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	8 cut(s)	248, 850, 896, 910, 931, 947, 961, 1270
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 443
BstNI	CCWGG	3 cut(s)	582, 858, 1253
BstSCI	CCNGG	3 cut(s)	580, 856, 1251
BstSLI	GKGCMC	2 cut(s)	439, 1294
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	98, 478
BstV2I	GAAGAC	2 cut(s)	108, 512
BstX2I	RGATCY	5 cut(s)	850, 896, 910, 947, 961
BstYI	RGATCY	5 cut(s)	850, 896, 910, 947, 961
BtsCI	GGATG	5 cut(s)	122, 373, 382, 611, 1240
BtsIMutI	CAGTG	1 cut(s)	458
BtuMI	TCGCGA	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	314, 318
CciI	TCATGA	2 cut(s)	876, 972
Cfr13I	GGNCC	2 cut(s)	403, 1218
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	5 cut(s)	524, 877, 973, 1034, 1195
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	8 cut(s)	20, 154, 204, 219, 483, 652, 978, 1214
DpnI	GATC	8 cut(s)	250, 852, 898, 912, 933, 949, 963, 1272
DpnII	GATC	8 cut(s)	248, 850, 896, 910, 931, 947, 961, 1270
Eam1104I	CTCTTC	2 cut(s)	37, 1110
EarI	CTCTTC	2 cut(s)	37, 1110
Ecl136II	GAGCTC	2 cut(s)	17, 651
Eco24I	GRGCYC	2 cut(s)	19, 653
Eco47I	GGWCC	2 cut(s)	403, 1218
Eco53kI	GAGCTC	2 cut(s)	17, 651
EcoICRI	GAGCTC	2 cut(s)	17, 651
EcoRII	CCWGG	3 cut(s)	580, 856, 1251
EcoT38I	GRGCYC	2 cut(s)	19, 653
FaeI	CATG	5 cut(s)	527, 880, 976, 1037, 1198
FalI	AAGNNNNNCTT	1 cut(s)	1279
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	5 cut(s)	523, 876, 972, 1033, 1194
Fnu4HI	GCNGC	3 cut(s)	87, 339, 492
FokI	GGATG	5 cut(s)	109, 380, 389, 618, 1247
FriOI	GRGCYC	2 cut(s)	19, 653
Fsp4HI	GCNGC	3 cut(s)	87, 339, 492
GluI	GCNGC	3 cut(s)	87, 339, 492
GsuI	CTGGAG	3 cut(s)	564, 921, 1235
HapII	CCGG	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	690
Hin1II	CATG	5 cut(s)	527, 880, 976, 1037, 1198
HincII	GTYRAC	1 cut(s)	1145
HindII	GTYRAC	1 cut(s)	1145
HindIII	AAGCTT	2 cut(s)	6, 326
HinfI	GANTC	5 cut(s)	107, 134, 152, 200, 1153
HpaII	CCGG	1 cut(s)	447
Hpy166II	GTNNAC	3 cut(s)	1145, 1240, 1292
Hpy188I	TCNGA	9 cut(s)	21, 133, 139, 151, 199, 222, 358, 1016, 1110
Hpy188III	TCNNGA	8 cut(s)	98, 319, 332, 877, 900, 973, 1043, 1228
Hpy8I	GTNNAC	3 cut(s)	1145, 1240, 1292
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	4 cut(s)	76, 403, 1078, 1162
HpyCH4III	ACNGT	3 cut(s)	167, 832, 1058
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	3 cut(s)	458, 719, 1292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 443
HpyF3I	CTNAG	8 cut(s)	20, 154, 204, 219, 483, 652, 978, 1214
HpySE526I	ACGT	1 cut(s)	690
Hsp92I	GRCGYC	1 cut(s)	690
Hsp92II	CATG	5 cut(s)	527, 880, 976, 1037, 1198
Kzo9I	GATC	8 cut(s)	248, 850, 896, 910, 931, 947, 961, 1270
LmnI	GCTCC	3 cut(s)	648, 749, 1210
Lsp1109I	GCAGC	2 cut(s)	98, 478
LweI	GCATC	4 cut(s)	596, 706, 709, 1129
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	3 cut(s)	498, 596, 1258
MalI	GATC	8 cut(s)	250, 852, 898, 912, 933, 949, 963, 1272
MboI	GATC	8 cut(s)	248, 850, 896, 910, 931, 947, 961, 1270
MflI	RGATCY	5 cut(s)	850, 896, 910, 947, 961
MhlI	GDGCHC	5 cut(s)	19, 439, 653, 675, 1294
MluCI	AATT	8 cut(s)	263, 466, 561, 585, 658, 842, 1136, 1188
MlyI	GAGTC	2 cut(s)	128, 146
MseI	TTAA	8 cut(s)	56, 303, 593, 657, 734, 827, 915, 1139
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	3 cut(s)	582, 858, 1253
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	3 cut(s)	582, 858, 1253
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	14, 443
NdeII	GATC	8 cut(s)	248, 850, 896, 910, 931, 947, 961, 1270
NlaIII	CATG	5 cut(s)	527, 880, 976, 1037, 1198
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	862
NmuCI	GTSAC	2 cut(s)	498, 1258
NruI	TCGCGA	1 cut(s)	320
NspV	TTCGAA	1 cut(s)	35
PagI	TCATGA	2 cut(s)	876, 972
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	107, 200, 1153
PflFI	GACNNNGTC	2 cut(s)	155, 1034
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	88, 340, 493
PleI	GAGTC	2 cut(s)	128, 146
PpsI	GAGTC	2 cut(s)	128, 146
PshBI	ATTAAT	1 cut(s)	734
Psp124BI	GAGCTC	2 cut(s)	19, 653
Psp6I	CCWGG	3 cut(s)	580, 856, 1251
PspGI	CCWGG	3 cut(s)	580, 856, 1251
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	2 cut(s)	403, 1218
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PsuI	RGATCY	5 cut(s)	850, 896, 910, 947, 961
PsyI	GACNNNGTC	2 cut(s)	155, 1034
RruI	TCGCGA	1 cut(s)	320
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SacI	GAGCTC	2 cut(s)	19, 653
SaqAI	TTAA	8 cut(s)	56, 303, 593, 657, 734, 827, 915, 1139
SatI	GCNGC	3 cut(s)	87, 339, 492
Sau3AI	GATC	8 cut(s)	248, 850, 896, 910, 931, 947, 961, 1270
Sau96I	GGNCC	2 cut(s)	403, 1218
SchI	GAGTC	2 cut(s)	128, 146
ScrFI	CCNGG	3 cut(s)	582, 858, 1253
SduI	GDGCHC	5 cut(s)	19, 439, 653, 675, 1294
SfaNI	GCATC	4 cut(s)	596, 706, 709, 1129
SfuI	TTCGAA	1 cut(s)	35
SinI	GGWCC	2 cut(s)	403, 1218
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	8 cut(s)	263, 466, 561, 585, 658, 842, 1136, 1188
SsiI	CCGC	2 cut(s)	338, 341
SstI	GAGCTC	2 cut(s)	19, 653
StyD4I	CCNGG	3 cut(s)	580, 856, 1251
TaaI	ACNGT	3 cut(s)	167, 832, 1058
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	2 cut(s)	35, 687
TasI	AATT	8 cut(s)	263, 466, 561, 585, 658, 842, 1136, 1188
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	107, 200, 1153
Tru1I	TTAA	8 cut(s)	56, 303, 593, 657, 734, 827, 915, 1139
Tru9I	TTAA	8 cut(s)	56, 303, 593, 657, 734, 827, 915, 1139
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	2 cut(s)	498, 1258
TseI	GCWGC	2 cut(s)	86, 491
Tsp45I	GTSAC	2 cut(s)	498, 1258
TspDTI	ATGAA	6 cut(s)	17, 276, 540, 803, 865, 1004
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	1 cut(s)	465
Tth111I	GACNNNGTC	2 cut(s)	155, 1034
VneI	GTGCAC	1 cut(s)	1290
VpaK11BI	GGWCC	2 cut(s)	403, 1218
VspI	ATTAAT	1 cut(s)	734
XapI	RAATTY	1 cut(s)	561
ZraI	GACGTC	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.