MD10G1227500.v1.1
ERF Family

Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. Era GTPase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
32438379 .. 32442429
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1227500.v1.1.491

Sequence Viewer

Length: 1311 bp
ATGAAAGCTCTAAGAGTTCTGAGAACCCTCTCTTCAAAACCCACCAAAACCCCTTTAAACCCAGCCTCCTTGTTCCACCGGTTCTACGCCGCTCAGCCGCAAGAGGACGACTCCGGTCACAACCCATCTTTCTCAGACCCCGAAAATGGTTCGGACTCGGTTTTTGACAGTACCCATTACGCCATACCATCCGTTGGTTCGGATTCCAAGCCCAAAACTCCTCAGAAGCCGACTTGGGACAACAAGTACAGATCAAAAGCTGATAAATCGATCGGGGTGGACGCCCAGAAGAAGAAATTGAAGCGTTTGGAGGAAGAGGAGGAGCAAAAGAGTAGAGTGCTCGCTAAGGCGCTTCTCGAGGCAGCATTGGAGCGCGCAGATGATGAGGAATCAGGGGATGAGGAGGAAATGGTGAAGGAGGAGGACCAAAAGGCGCTGTCTGTAGGGATAATTGGTGCTCCGAATGCGGGAAAGTCTGCTCTGACTAATTATATGGTTGGGACGAAGGTTTCCGCTGTTTCACGGAAGACAAACACCACTACTCATGAAGTATTAGGAGTTATGACAAAAGGAGACACACAAATTTGTTTCTTTGATACTCCAGGTCTTACATTAAGCAACAAGGGATGTCCTTACAAGGATTTCAAGGTTCGCGTAGAAAGTGCTTGGAGTTCAGTTACTTTATACGATGTGCTCATAGTTATATTTGACGTCCATAGGCATCTTACCAGGCCTGATGTAAGGGTTATAGGATTGATCAAGCGTATGGGAGCACTACCACACCCAGTGCAAAAGCGAATTTTATGTATGAACAAGGTTGATTTAGTTGAGAAGAAGAAAGACTTGTTAAAGGTTGCTGAGGAATTCAAAGATCTTCCTGGTTATGAAAGGCGTTTCATGATTTCTGGTCTGAAGGGCTCTGGAGTGAAAGATCTTGCTCAATATTTGATGGATCAGGCATATATGTCTGGTTTACATGCCGTTAAACGGTCTTGGGATGAAGATCCATTCATCATGACTGAGGAAGTTATGAAGAATATATCATTAGAAGTTGTCCGAGAAAGGTTGTTAGACCATGTGCATCAGGAAATCCCATACACTATTGAACATCGGTTGATGGACTGGAAGGAGTTGCGAGATGGCTCTCTTCGGATTGAACAACATCTTATCACGAACAAATTAAGTCAACGCAAGATTCTTGTAGGAAAGAAGGGCAATAAAATAGGGAGAATTGGCATGGAAGCTAATGAGGAGCTACGGTCCATCTTCAAGAGGGATGTCCATCTCATTCTCCAGGTTAGACTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

49.45

Weight (kDa)

8.96

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 148 - 255 1.1e-16 50S ribosome-binding GTPase
KH_2 PF07650 363 - 431 1.9e-08 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 194
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 2 cut(s) 375, 654
AciI CCGC 4 cut(s) 90, 98, 467, 513
AclWI GGATC 2 cut(s) 960, 998
AcsI RAATTY 3 cut(s) 582, 798, 863
AcuI CTGAAG 1 cut(s) 932
AcyI GRCGYC 2 cut(s) 282, 711
AdeI CACNNNGTG 1 cut(s) 787
AfaI GTAC 2 cut(s) 172, 248
AfiI CCNNNNNNNGG 4 cut(s) 146, 194, 467, 987
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 7 cut(s) 36, 301, 646, 868, 1106, 1157, 1270
AjnI CCWGG 4 cut(s) 601, 728, 877, 1293
AluBI AGCT 4 cut(s) 8, 260, 1244, 1255
AluI AGCT 4 cut(s) 8, 260, 1244, 1255
Alw21I GWGCWC 4 cut(s) 342, 460, 696, 775
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 2 cut(s) 960, 998
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 731
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 3 cut(s) 582, 798, 863
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsiGI ACCGGT 1 cut(s) 78
AspLEI GCGC 4 cut(s) 352, 375, 377, 436
AspS9I GGNCC 2 cut(s) 424, 1260
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 2 cut(s) 424, 1260
BanII GRGCYC 1 cut(s) 920
BbsI GAAGAC 1 cut(s) 533
Bbv12I GWGCWC 4 cut(s) 342, 460, 696, 775
BbvCI CCTCAGC 1 cut(s) 858
BbvI GCAGC 1 cut(s) 374
BccI CCATC 7 cut(s) 133, 196, 943, 1111, 1133, 1271, 1290
BceAI ACGGC 1 cut(s) 965
BciT130I CCWGG 4 cut(s) 603, 730, 879, 1295
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 441
BfoI RGCGCY 2 cut(s) 353, 437
BglII AGATCT 2 cut(s) 871, 931
BisI GCNGC 3 cut(s) 90, 98, 363
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 3 cut(s) 91, 99, 364
Bme1390I CCNGG 4 cut(s) 603, 730, 879, 1295
Bme18I GGWCC 2 cut(s) 424, 1260
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 424, 1260
BmrFI CCNGG 4 cut(s) 603, 730, 879, 1295
BmrI ACTGGG 1 cut(s) 779
BmsI GCATC 2 cut(s) 730, 1090
BmuI ACTGGG 1 cut(s) 779
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 533
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 3 cut(s) 585, 942, 1277
Bpu10I CCTNAGC 2 cut(s) 345, 858
Bpu1102I GCTNAGC 1 cut(s) 93
Bsa29I ATCGAT 1 cut(s) 269
BsaBI GATNNNNATC 2 cut(s) 1002, 1281
BsaHI GRCGYC 2 cut(s) 282, 711
BsaWI WCCGGW 2 cut(s) 78, 113
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 1244, 1274
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 194, 467, 987
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 785, 1127
Bse8I GATNNNNATC 2 cut(s) 1002, 1281
BseBI CCWGG 4 cut(s) 603, 730, 879, 1295
BseCI ATCGAT 1 cut(s) 269
BseGI GGATG 5 cut(s) 188, 403, 632, 1003, 1282
BseJI GATNNNNATC 2 cut(s) 1002, 1281
BseLI CCNNNNNNNGG 4 cut(s) 146, 194, 467, 987
BseMII CTCAG 6 cut(s) 11, 107, 147, 236, 849, 1011
BseNI ACTGG 2 cut(s) 785, 1127
BsePI GCGCGC 1 cut(s) 373
BseRI GAGGAG 6 cut(s) 210, 332, 335, 416, 434, 1265
BseXI GCAGC 1 cut(s) 374
BseYI CCCAGC 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 375, 654
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 733
BshTI ACCGGT 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 273
BsiHKAI GWGCWC 4 cut(s) 342, 460, 696, 775
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 2 cut(s) 79, 114
BslFI GGGAC 2 cut(s) 251, 514
BslI CCNNNNNNNGG 4 cut(s) 146, 194, 467, 987
BsmAI GTCTC 1 cut(s) 567
BsmFI GGGAC 2 cut(s) 251, 514
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 733
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 5 cut(s) 342, 460, 696, 775, 920
Bsp143I GATC 7 cut(s) 251, 270, 756, 871, 931, 952, 1003
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 4 cut(s) 90, 98, 467, 513
BspANI GGCC 1 cut(s) 733
BspCNI CTCAG 6 cut(s) 12, 106, 146, 235, 850, 1012
BspDI ATCGAT 1 cut(s) 269
BspFNI CGCG 2 cut(s) 375, 654
BspHI TCATGA 3 cut(s) 544, 897, 1014
BspPI GGATC 2 cut(s) 960, 998
BsrBI CCGCTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 2 cut(s) 785, 1127
BssAI RCCGGY 1 cut(s) 78
BssHII GCGCGC 1 cut(s) 373
BssMI GATC 7 cut(s) 251, 270, 756, 871, 931, 952, 1003
BssNI GRCGYC 2 cut(s) 282, 711
Bst2UI CCWGG 4 cut(s) 603, 730, 879, 1295
Bst4CI ACNGT 3 cut(s) 170, 990, 1260
Bst6I CTCTTC 3 cut(s) 37, 309, 1152
BstACI GRCGYC 2 cut(s) 282, 711
BstC8I GCNNGC 2 cut(s) 342, 375
BstDEI CTNAG 8 cut(s) 11, 20, 93, 133, 222, 345, 858, 1020
BstF5I GGATG 5 cut(s) 188, 403, 632, 1003, 1282
BstFNI CGCG 2 cut(s) 375, 654
BstH2I RGCGCY 2 cut(s) 353, 437
BstHHI GCGC 4 cut(s) 352, 375, 377, 436
BstKTI GATC 7 cut(s) 254, 273, 759, 874, 934, 955, 1006
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 7 cut(s) 251, 270, 756, 871, 931, 952, 1003
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 4 cut(s) 603, 730, 879, 1295
BstNSI RCATGY 1 cut(s) 980
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 4 cut(s) 601, 728, 877, 1293
BstSFI CTRYAG 1 cut(s) 441
BstUI CGCG 2 cut(s) 375, 654
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 3 cut(s) 871, 931, 1003
BstYI RGATCY 3 cut(s) 871, 931, 1003
Bsu15I ATCGAT 1 cut(s) 269
BsuRI GGCC 1 cut(s) 733
BsuTUI ATCGAT 1 cut(s) 269
BtsCI GGATG 5 cut(s) 188, 403, 632, 1003, 1282
BtsIMutI CAGTG 1 cut(s) 792
Cac8I GCNNGC 2 cut(s) 342, 375
CciI TCATGA 3 cut(s) 544, 897, 1014
CfoI GCGC 4 cut(s) 352, 375, 377, 436
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 424, 1260
ClaI ATCGAT 1 cut(s) 269
CseI GACGC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 171, 247
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 6 cut(s) 545, 898, 977, 1015, 1076, 1237
CviQI GTAC 2 cut(s) 171, 247
DdeI CTNAG 8 cut(s) 11, 20, 93, 133, 222, 345, 858, 1020
DpnI GATC 7 cut(s) 253, 272, 758, 873, 933, 954, 1005
DpnII GATC 7 cut(s) 251, 270, 756, 871, 931, 952, 1003
DraI TTTAAA 1 cut(s) 57
DraIII CACNNNGTG 1 cut(s) 787
Eam1104I CTCTTC 3 cut(s) 37, 309, 1152
EarI CTCTTC 3 cut(s) 37, 309, 1152
Eco147I AGGCCT 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 920
Eco47I GGWCC 2 cut(s) 424, 1260
Eco57I CTGAAG 1 cut(s) 932
Eco88I CYCGRG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 4 cut(s) 601, 728, 877, 1293
EcoT38I GRGCYC 1 cut(s) 920
FaeI CATG 6 cut(s) 548, 901, 980, 1018, 1079, 1240
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FaqI GGGAC 2 cut(s) 251, 514
FatI CATG 6 cut(s) 544, 897, 976, 1014, 1075, 1236
FauI CCCGC 1 cut(s) 460
FbaI TGATCA 1 cut(s) 756
Fnu4HI GCNGC 3 cut(s) 90, 98, 363
FokI GGATG 5 cut(s) 175, 410, 639, 1010, 1289
FriOI GRGCYC 1 cut(s) 920
Fsp4HI GCNGC 3 cut(s) 90, 98, 363
GlaI GCGC 4 cut(s) 351, 374, 376, 435
GluI GCNGC 3 cut(s) 90, 98, 363
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 3 cut(s) 585, 942, 1277
HaeII RGCGCY 2 cut(s) 353, 437
HaeIII GGCC 1 cut(s) 733
HapII CCGG 2 cut(s) 79, 114
HgaI GACGC 1 cut(s) 290
HhaI GCGC 4 cut(s) 352, 375, 377, 436
Hin1I GRCGYC 2 cut(s) 282, 711
Hin1II CATG 6 cut(s) 548, 901, 980, 1018, 1079, 1240
Hin6I GCGC 4 cut(s) 350, 373, 375, 434
HinP1I GCGC 4 cut(s) 350, 373, 375, 434
HincII GTYRAC 1 cut(s) 1187
HindII GTYRAC 1 cut(s) 1187
HinfI GANTC 5 cut(s) 110, 155, 203, 389, 1195
HpaII CCGG 2 cut(s) 79, 114
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 3 cut(s) 280, 974, 1187
Hpy188III TCNNGA 8 cut(s) 356, 545, 898, 921, 1015, 1085, 1171, 1270
Hpy8I GTNNAC 3 cut(s) 280, 974, 1187
HpyAV CCTTC 5 cut(s) 409, 499, 907, 1120, 1204
HpyCH4III ACNGT 3 cut(s) 170, 990, 1260
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 2 cut(s) 790, 1081
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 8 cut(s) 11, 20, 93, 133, 222, 345, 858, 1020
HpySE526I ACGT 1 cut(s) 711
Hsp92I GRCGYC 2 cut(s) 282, 711
Hsp92II CATG 6 cut(s) 548, 901, 980, 1018, 1079, 1240
HspAI GCGC 4 cut(s) 350, 373, 375, 434
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 7 cut(s) 251, 270, 756, 871, 931, 952, 1003
LmnI GCTCC 5 cut(s) 322, 370, 463, 770, 1252
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 2 cut(s) 730, 1090
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 2 cut(s) 116, 676
MalI GATC 7 cut(s) 253, 272, 758, 873, 933, 954, 1005
MbiI CCGCTC 1 cut(s) 92
MboI GATC 7 cut(s) 251, 270, 756, 871, 931, 952, 1003
MflI RGATCY 3 cut(s) 871, 931, 1003
MhlI GDGCHC 5 cut(s) 342, 460, 696, 775, 920
MluCI AATT 8 cut(s) 296, 450, 487, 582, 798, 863, 1178, 1230
MlyI GAGTC 2 cut(s) 104, 149
MseI TTAA 5 cut(s) 56, 614, 848, 984, 1181
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 2 cut(s) 79, 114
MspR9I CCNGG 4 cut(s) 603, 730, 879, 1295
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 4 cut(s) 603, 730, 879, 1295
MvnI CGCG 2 cut(s) 375, 654
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 7 cut(s) 251, 270, 756, 871, 931, 952, 1003
NlaIII CATG 6 cut(s) 548, 901, 980, 1018, 1079, 1240
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 1 cut(s) 980
PaeR7I CTCGAG 1 cut(s) 356
PagI TCATGA 3 cut(s) 544, 897, 1014
PauI GCGCGC 1 cut(s) 373
PceI AGGCCT 1 cut(s) 733
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 3 cut(s) 203, 389, 1195
PflMI CCANNNNNTGG 1 cut(s) 194
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 3 cut(s) 91, 99, 364
Ple19I CGATCG 1 cut(s) 273
PleI GAGTC 2 cut(s) 104, 149
PpsI GAGTC 2 cut(s) 104, 149
PshAI GACNNNNGTC 1 cut(s) 114
Psp6I CCWGG 4 cut(s) 601, 728, 877, 1293
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 4 cut(s) 601, 728, 877, 1293
PspPI GGNCC 2 cut(s) 424, 1260
PsuI RGATCY 3 cut(s) 871, 931, 1003
PteI GCGCGC 1 cut(s) 373
PvuI CGATCG 1 cut(s) 273
RsaI GTAC 2 cut(s) 172, 248
RsaNI GTAC 2 cut(s) 171, 247
SaqAI TTAA 5 cut(s) 56, 614, 848, 984, 1181
SatI GCNGC 3 cut(s) 90, 98, 363
Sau3AI GATC 7 cut(s) 251, 270, 756, 871, 931, 952, 1003
Sau96I GGNCC 2 cut(s) 424, 1260
SchI GAGTC 2 cut(s) 104, 149
ScrFI CCNGG 4 cut(s) 603, 730, 879, 1295
SduI GDGCHC 5 cut(s) 342, 460, 696, 775, 920
SfaNI GCATC 2 cut(s) 730, 1090
SfcI CTRYAG 1 cut(s) 441
Sfr274I CTCGAG 1 cut(s) 356
SinI GGWCC 2 cut(s) 424, 1260
SlaI CTCGAG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 8 cut(s) 296, 450, 487, 582, 798, 863, 1178, 1230
SseBI AGGCCT 1 cut(s) 733
SsiI CCGC 4 cut(s) 90, 98, 467, 513
SspI AATATT 1 cut(s) 944
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 4 cut(s) 601, 728, 877, 1293
TaaI ACNGT 3 cut(s) 170, 990, 1260
TaiI ACGT 1 cut(s) 714
TaqI TCGA 2 cut(s) 269, 357
TasI AATT 8 cut(s) 296, 450, 487, 582, 798, 863, 1178, 1230
TatI WGTACW 1 cut(s) 246
TauI GCSGC 2 cut(s) 92, 100
TfiI GAWTC 3 cut(s) 203, 389, 1195
Tru1I TTAA 5 cut(s) 56, 614, 848, 984, 1181
Tru9I TTAA 5 cut(s) 56, 614, 848, 984, 1181
TscAI CASTG 1 cut(s) 792
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 8 cut(s) 17, 561, 824, 886, 900, 1000, 1014, 1046
TspGWI ACGGA 2 cut(s) 181, 538
TspRI CASTG 1 cut(s) 792
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 424, 1260
XapI RAATTY 3 cut(s) 582, 798, 863
XceI RCATGY 1 cut(s) 980
XhoI CTCGAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.