Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016028

Physical Location & Seq

Genomic Coordinates Reverse (-)

11394690 .. 11396018

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAAAACTTTGGAATTAGCTTTACCTCCATCTCCACCGTCTTTAGTTCCTTCTTTTAACTACAATTCCACCGCACGAAGCGTCGGGAATGATGTCAGAACCAACTTCGATGTTCAACTTTTTCTAAGGAAACCTAAACACCAAAAATCAGAACCTGTCGTCGTTATTCAACAACCTCAGATTCAACCGCAAAATCCAAGTTCTCGTTGTTCTACTTCTGATATTCTCAGACTAATGGATTCTCTTTCTTTACCAGGAAACGAAGATATTTACTCTTGTCTTGCCAAAGAATCAGCCAGAGAAAACGATCAACGTGGAGCTCACGAGCTACAAGTGCATATCATGAAGTCTAGTATTAGACCCACGATCACTTTTATCAATCGTCTTCTTTTGATGCATGTTTCGTGTGGGCGTTTAGATATTACACGCCAGATGTTCGATAGAATGCCTCACAGAGATTTTCATTCCTGGGCAATTGTTTTCCTCGGTTGTATTGAAATGGGTGATTACGAGGACGCTGCTTTCCTTTTTGTTTCGATGTTGAAACATTCTCAGAAAGGTGCTTTCAAGATTCCGTCTTGGATCTTGGGCTGCGTTTTGAAAGCTTGTGCCATGATTAGAGACTTCGAGTTAGGGAAACAGGTTCATGCCTTGTGTCATAAGCTAGGGTTTATAGACGAAGAAGATTCATATCTATCGGGTTCTTTGATACGTTTCTACGGAGAATTCAGGTGTTTGGAAGACGCTAATCTCGTGTTACACCAGCTCTCTAATGCTAACACTGTTGCTTGGGCAGCGAAAGTTACTAACGATTACAGAGAAGGAGAGTTTCAAGAAGTAATCCGCGATTTCATCGAAATGGGTAACCATGGAATCAAGAAGAACGTCTCAGTGTTCTCTAATGTTCTAAAAGCATGCTCATGGGTCAGTGACGGTGGGAGAAGCGGGCAACAAGTGCATGCGAATGCTATAAAGCTCGGATTTGAGTCAGATTGTTTGATCCGATGTCGGTTAATTGAGATGTATGGGAAGTATGGGAAGGTGAAAGACGCGGAAAAGGTTTTTAAGAGTAGTAAGGACGAGACTAGTGTTAGTTGCTGGAACGCTATGGTCGCAAGTTATATGCAGAATGGGATTTACATTGAAGCCATTAAGCTTCTCTATCAGATGAAAGCAACTGGAATCAAAGCACATGACACGCTTTTGAACGAAGCCCACCTTCAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

409

Amino Acids

46.25

Weight (kDa)

7.93

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31790
fragaria_vesca	FvH4_2g37080 FvH4_2g37240
rosa_chinensis	RchiOBHm_Chr6g0304481
rosa_laevigata	RLG00000010973
rosa_multiflora	Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii	Rroxscaffold_7G00163710
rosa_rugosa	Rorug06G0332100
rosa_samantha	Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana	Rw6G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	846, 1052
AciI	CCGC	5 cut(s)	72, 188, 844, 945, 1052
AclWI	GGATC	2 cut(s)	590, 994
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	1 cut(s)	1205
AhlI	ACTAGT	1 cut(s)	1085
AjnI	CCWGG	2 cut(s)	253, 467
AluBI	AGCT	8 cut(s)	20, 320, 328, 605, 664, 766, 976, 1156
AluI	AGCT	8 cut(s)	20, 320, 328, 605, 664, 766, 976, 1156
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	3 cut(s)	615, 892, 1076
AlwI	GGATC	2 cut(s)	590, 994
AlwNI	CAGNNNCTG	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	518, 591, 794
ApoI	RAATTY	1 cut(s)	725
AsuHPI	GGTGA	2 cut(s)	515, 1054
BanII	GRGCYC	1 cut(s)	322
BauI	CACGAG	2 cut(s)	323, 752
BbsI	GAAGAC	2 cut(s)	377, 747
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	505, 578, 806
BccI	CCATC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	2 cut(s)	255, 469
BcoDI	GTCTC	3 cut(s)	615, 892, 1076
BcuI	ACTAGT	1 cut(s)	1085
BfaI	CTAG	3 cut(s)	351, 665, 1086
BisI	GCNGC	3 cut(s)	519, 592, 795
BlsI	GCNGC	3 cut(s)	520, 593, 796
Bme1390I	CCNGG	2 cut(s)	255, 469
BmrFI	CCNGG	2 cut(s)	255, 469
BmsI	GCATC	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	377, 747
BsaBI	GATNNNNATC	1 cut(s)	690
BsaJI	CCNNGG	3 cut(s)	468, 484, 868
Bse1I	ACTGG	1 cut(s)	1183
Bse8I	GATNNNNATC	1 cut(s)	690
BseBI	CCWGG	2 cut(s)	255, 469
BseDI	CCNNGG	3 cut(s)	468, 484, 868
BseJI	GATNNNNATC	1 cut(s)	690
BseMII	CTCAG	4 cut(s)	191, 241, 566, 903
BseNI	ACTGG	1 cut(s)	1183
BseXI	GCAGC	3 cut(s)	505, 578, 806
Bsh1236I	CGCG	2 cut(s)	846, 1052
BsiHKAI	GWGCWC	1 cut(s)	322
BsmAI	GTCTC	3 cut(s)	615, 892, 1076
BsmBI	CGTCTC	1 cut(s)	892
BsmI	GAATGC	2 cut(s)	450, 970
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	307, 366, 582, 999
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	5 cut(s)	72, 188, 844, 945, 1052
BspCNI	CTCAG	4 cut(s)	190, 240, 565, 902
BspFNI	CGCG	2 cut(s)	846, 1052
BspHI	TCATGA	1 cut(s)	342
BspPI	GGATC	2 cut(s)	590, 994
BsrI	ACTGG	1 cut(s)	1183
BssECI	CCNNGG	3 cut(s)	468, 484, 868
BssMI	GATC	4 cut(s)	307, 366, 582, 999
BssSI	CACGAG	2 cut(s)	323, 752
BssT1I	CCWWGG	1 cut(s)	868
Bst2BI	CACGAG	2 cut(s)	323, 752
Bst2UI	CCWGG	2 cut(s)	255, 469
Bst4CI	ACNGT	3 cut(s)	39, 784, 935
BstAPI	GCANNNNNTGC	1 cut(s)	955
BstC8I	GCNNGC	3 cut(s)	916, 947, 960
BstDEI	CTNAG	5 cut(s)	125, 177, 227, 552, 889
BstDSI	CCRYGG	1 cut(s)	868
BstEII	GGTNACC	1 cut(s)	863
BstFNI	CGCG	2 cut(s)	846, 1052
BstKTI	GATC	4 cut(s)	310, 369, 585, 1002
BstMAI	GTCTC	3 cut(s)	615, 892, 1076
BstMBI	GATC	4 cut(s)	307, 366, 582, 999
BstMWI	GCNNNNNNNGC	4 cut(s)	334, 794, 955, 1112
BstNI	CCWGG	2 cut(s)	255, 469
BstNSI	RCATGY	3 cut(s)	401, 918, 962
BstPI	GGTNACC	1 cut(s)	863
BstSCI	CCNGG	2 cut(s)	253, 467
BstUI	CGCG	2 cut(s)	846, 1052
BstV1I	GCAGC	3 cut(s)	505, 578, 806
BstV2I	GAAGAC	2 cut(s)	377, 747
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	868
BtsIMutI	CAGTG	3 cut(s)	780, 897, 934
Cac8I	GCNNGC	3 cut(s)	916, 947, 960
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	1 cut(s)	342
CseI	GACGC	4 cut(s)	70, 524, 752, 1058
CviAII	CATG	9 cut(s)	343, 398, 613, 647, 869, 915, 921, 959, 1193
DdeI	CTNAG	5 cut(s)	125, 177, 227, 552, 889
DpnI	GATC	4 cut(s)	309, 368, 584, 1001
DpnII	GATC	4 cut(s)	307, 366, 582, 999
Ecl136II	GAGCTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	868
Eco24I	GRGCYC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	1205
Eco91I	GGTNACC	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	863
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	253, 467
EcoT14I	CCWWGG	1 cut(s)	868
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	868
Esp3I	CGTCTC	1 cut(s)	892
FaeI	CATG	9 cut(s)	346, 401, 616, 650, 872, 918, 924, 962, 1196
FalI	AAGNNNNNCTT	1 cut(s)	1203
FatI	CATG	9 cut(s)	342, 397, 612, 646, 868, 914, 920, 958, 1192
FauI	CCCGC	1 cut(s)	938
Fnu4HI	GCNGC	3 cut(s)	519, 592, 795
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	3 cut(s)	519, 592, 795
FspBI	CTAG	3 cut(s)	351, 665, 1086
GluI	GCNGC	3 cut(s)	519, 592, 795
HgaI	GACGC	4 cut(s)	70, 524, 752, 1058
Hin1II	CATG	9 cut(s)	346, 401, 616, 650, 872, 918, 924, 962, 1196
HindIII	AAGCTT	2 cut(s)	603, 1154
HinfI	GANTC	8 cut(s)	181, 239, 290, 571, 686, 873, 986, 1182
HphI	GGTGA	2 cut(s)	515, 1054
Hpy188III	TCNNGA	6 cut(s)	85, 323, 343, 568, 833, 877
Hpy99I	CGWCG	2 cut(s)	86, 164
HpyAV	CCTTC	4 cut(s)	60, 815, 1033, 1229
HpyCH4III	ACNGT	3 cut(s)	39, 784, 935
HpyCH4IV	ACGT	3 cut(s)	313, 712, 885
HpyCH4V	TGCA	4 cut(s)	337, 397, 958, 1126
HpyF10VI	GCNNNNNNNGC	4 cut(s)	334, 794, 955, 1112
HpyF3I	CTNAG	5 cut(s)	125, 177, 227, 552, 889
HpySE526I	ACGT	3 cut(s)	313, 712, 885
Hsp92II	CATG	9 cut(s)	346, 401, 616, 650, 872, 918, 924, 962, 1196
Kzo9I	GATC	4 cut(s)	307, 366, 582, 999
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	3 cut(s)	505, 578, 806
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	3 cut(s)	351, 665, 1086
MaeII	ACGT	3 cut(s)	313, 712, 885
MaeIII	GTNAC	4 cut(s)	756, 802, 863, 929
MalI	GATC	4 cut(s)	309, 368, 584, 1001
MboI	GATC	4 cut(s)	307, 366, 582, 999
MboII	GAAGA	6 cut(s)	275, 377, 692, 695, 752, 892
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	5 cut(s)	14, 64, 474, 725, 1014
MlyI	GAGTC	1 cut(s)	995
MnlI	CCTC	5 cut(s)	36, 186, 459, 494, 505
Mph1103I	ATGCAT	1 cut(s)	399
MseI	TTAA	4 cut(s)	57, 1013, 1065, 1152
MslI	CAYNNNNRTG	3 cut(s)	857, 919, 963
MspR9I	CCNGG	2 cut(s)	255, 469
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	2 cut(s)	450, 970
MvaI	CCWGG	2 cut(s)	255, 469
MvnI	CGCG	2 cut(s)	846, 1052
MwoI	GCNNNNNNNGC	4 cut(s)	334, 794, 955, 1112
NcoI	CCATGG	1 cut(s)	868
NdeII	GATC	4 cut(s)	307, 366, 582, 999
NlaIII	CATG	9 cut(s)	346, 401, 616, 650, 872, 918, 924, 962, 1196
NmuCI	GTSAC	1 cut(s)	929
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	3 cut(s)	401, 918, 962
PaeI	GCATGC	2 cut(s)	918, 962
PagI	TCATGA	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	750
PctI	GAATGC	2 cut(s)	450, 970
PfeI	GAWTC	7 cut(s)	181, 239, 290, 571, 686, 873, 1182
PkrI	GCNGC	3 cut(s)	520, 593, 796
PleI	GAGTC	1 cut(s)	994
PpsI	GAGTC	1 cut(s)	994
Psp124BI	GAGCTC	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	253, 467
PspEI	GGTNACC	1 cut(s)	863
PspGI	CCWGG	2 cut(s)	253, 467
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	582
RseI	CAYNNNNRTG	3 cut(s)	857, 919, 963
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	4 cut(s)	57, 1013, 1065, 1152
SatI	GCNGC	3 cut(s)	519, 592, 795
Sau3AI	GATC	4 cut(s)	307, 366, 582, 999
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	2 cut(s)	255, 469
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	1 cut(s)	384
SmiMI	CAYNNNNRTG	3 cut(s)	857, 919, 963
SpeI	ACTAGT	1 cut(s)	1085
SphI	GCATGC	2 cut(s)	918, 962
Sse9I	AATT	5 cut(s)	14, 64, 474, 725, 1014
SsiI	CCGC	5 cut(s)	72, 188, 844, 945, 1052
SspMI	CTAG	3 cut(s)	351, 665, 1086
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	253, 467
StyI	CCWWGG	1 cut(s)	868
TaaI	ACNGT	3 cut(s)	39, 784, 935
TaiI	ACGT	3 cut(s)	316, 715, 888
TaqI	TCGA	5 cut(s)	108, 438, 536, 627, 855
TasI	AATT	5 cut(s)	14, 64, 474, 725, 1014
TfiI	GAWTC	7 cut(s)	181, 239, 290, 571, 686, 873, 1182
Tru1I	TTAA	4 cut(s)	57, 1013, 1065, 1152
Tru9I	TTAA	4 cut(s)	57, 1013, 1065, 1152
TscAI	CASTG	3 cut(s)	787, 897, 934
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	3 cut(s)	518, 591, 794
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	7 cut(s)	17, 359, 452, 635, 678, 841, 1184
TspGWI	ACGGA	2 cut(s)	564, 735
TspRI	CASTG	3 cut(s)	787, 897, 934
XapI	RAATTY	1 cut(s)	725
XceI	RCATGY	3 cut(s)	401, 918, 962
XspI	CTAG	3 cut(s)	351, 665, 1086
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.