Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8174882.1

Orthogroup ID

OG0016028

Physical Location & Seq

Genomic Coordinates Reverse (-)

218 .. 661

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8174882.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgatcaataactctagaggagagaggtttttcgacttgatcagtgactttaaggaaatagggagggctgggataaagaagaacacttgtatcatctcttgtgtcctcagggcgtgtgctaggatgcatgatgatggcttcagcggcagacaagttcatgccaatgccatcaaacttggagtggaatcccattctttcgtgcactgtgggttggtggatatgtatggaagaaacgggctacttagagatgcgaaactggtgtttcagacggtcaacgatacaacatctactgcgtgttggaatgccatgcttacaagttacttgcggaatgggttacacatcgaagcccttaagtttctgtatcagatgaaggcagatgggttgcagcctcaagaatatctgctggatcaagtgaggattgcttgcgctagtaatggtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

8.57

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31790
fragaria_vesca	FvH4_2g37080 FvH4_2g37240
rosa_chinensis	RchiOBHm_Chr6g0304481
rosa_laevigata	RLG00000010973
rosa_multiflora	Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii	Rroxscaffold_7G00163710
rosa_rugosa	Rorug06G0332100
rosa_samantha	Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana	Rw6G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	144, 325
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	124
AflII	CTTAAG	1 cut(s)	350
Alw21I	GWGCWC	1 cut(s)	204
Alw44I	GTGCAC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	414
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	73, 106
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	3 cut(s)	128, 176, 371
BclI	TGATCA	2 cut(s)	3, 39
BfaI	CTAG	3 cut(s)	15, 120, 429
BfrI	CTTAAG	1 cut(s)	350
BisI	GCNGC	2 cut(s)	145, 386
BlsI	GCNGC	2 cut(s)	146, 387
BmsI	GCATC	2 cut(s)	114, 238
BpuEI	CTTGAG	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	261
Bse21I	CCTNAGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	3, 39, 406
BspACI	CCGC	2 cut(s)	144, 325
BspCNI	CTCAG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	3, 39, 406
Bst4CI	ACNGT	2 cut(s)	206, 271
BstAFI	CTTAAG	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	107, 242
BstF5I	GGATG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	3 cut(s)	6, 42, 409
BstMBI	GATC	3 cut(s)	3, 39, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	397
Bsu36I	CCTNAGG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	49, 202
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	428
CviAII	CATG	3 cut(s)	128, 158, 307
CviJI	RGCY	5 cut(s)	68, 138, 238, 347, 388
CviKI_1	RGCY	5 cut(s)	68, 138, 238, 347, 388
DdeI	CTNAG	2 cut(s)	107, 242
DpnI	GATC	3 cut(s)	5, 41, 408
DpnII	GATC	3 cut(s)	3, 39, 406
Eco57I	CTGAAG	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	107
EcoT22I	ATGCAT	1 cut(s)	129
FaeI	CATG	3 cut(s)	131, 161, 310
FaiI	YATR	6 cut(s)	129, 159, 221, 225, 308, 442
FatI	CATG	3 cut(s)	127, 157, 306
FbaI	TGATCA	2 cut(s)	3, 39
Fnu4HI	GCNGC	2 cut(s)	145, 386
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	145, 386
FspBI	CTAG	3 cut(s)	15, 120, 429
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	145, 386
GsaI	CCCAGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	131, 161, 310
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	202, 274
Hpy188I	TCNGA	2 cut(s)	267, 366
Hpy188III	TCNNGA	2 cut(s)	15, 392
Hpy8I	GTNNAC	2 cut(s)	202, 274
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	206, 271
HpyCH4V	TGCA	3 cut(s)	127, 202, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	107, 242
Hsp92II	CATG	3 cut(s)	131, 161, 310
HspAI	GCGC	1 cut(s)	426
Ksp22I	TGATCA	2 cut(s)	3, 39
Kzo9I	GATC	3 cut(s)	3, 39, 406
LpnPI	CCDG	4 cut(s)	54, 94, 242, 389
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	114, 238
MaeI	CTAG	3 cut(s)	15, 120, 429
MaeIII	GTNAC	3 cut(s)	44, 317, 333
MalI	GATC	3 cut(s)	5, 41, 408
MboI	GATC	3 cut(s)	3, 39, 406
MboII	GAAGA	2 cut(s)	91, 240
MhlI	GDGCHC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	6 cut(s)	11, 18, 57, 116, 399, 408
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	2 cut(s)	51, 351
MslI	CAYNNNNRTG	2 cut(s)	132, 162
MspA1I	CMGCKG	1 cut(s)	144
MspCI	CTTAAG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	3 cut(s)	3, 39, 406
NlaIII	CATG	3 cut(s)	131, 161, 310
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	129
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	146, 387
PspFI	CCCAGC	1 cut(s)	68
RseI	CAYNNNNRTG	2 cut(s)	132, 162
SaqAI	TTAA	2 cut(s)	51, 351
SatI	GCNGC	2 cut(s)	145, 386
Sau3AI	GATC	3 cut(s)	3, 39, 406
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	1 cut(s)	29
SfaNI	GCATC	2 cut(s)	114, 238
SmiMI	CAYNNNNRTG	2 cut(s)	132, 162
SmlI	CTYRAG	2 cut(s)	350, 390
SmoI	CTYRAG	2 cut(s)	350, 390
SsiI	CCGC	2 cut(s)	144, 325
SspMI	CTAG	3 cut(s)	15, 120, 429
TaaI	ACNGT	2 cut(s)	206, 271
TaqI	TCGA	2 cut(s)	33, 342
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	51, 351
Tru9I	TTAA	2 cut(s)	51, 351
TscAI	CASTG	2 cut(s)	49, 209
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	146, 383
TspRI	CASTG	2 cut(s)	49, 209
Vha464I	CTTAAG	1 cut(s)	350
VneI	GTGCAC	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	14
XspI	CTAG	3 cut(s)	15, 120, 429
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.