Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016028

Physical Location & Seq

Genomic Coordinates Forward (+)

63119630 .. 63121455

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG444900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGAACTGCAGCACCTCAACAATACACATACCAGTGGCAATGCCACTCTAGATTCTCAGCTACCAACCACAACAACCCGTCCATATCCAAAGTCAGGTTACCCCTCCCGCGCAGCTCAAAATCAAACACTCTTGCCTCCAACAATACTACAATTCATCCAATTCCAACGCCGCCGGTTAAACCCCACCGGAATAGGAATAATAATAATGATGATATTAGGAAGAGGAAGTACAAGAAGAAGAAGAAGAATGGATGTGGGTCCAGCTGCAGCACCTCCGATATTCTGCGGCTGATGGATGGGCTCCGAGTCCCCGTAGCAGCAGCAGCAGCCCCAGCTGACAATGGCATGTATGCTTCTCTCATCAACGATTGCTCGGACTCCGGCGCAGCTCTCGACTTACAGGCCCACCTTACTAGGAAGGGCCGCCGTAACCCACCACCGCCTCTACACTTGCTCAACCGCCTGCTTCTCCGTCACGTCACTAACGGTCGTTTAGACAATGCTCACCACCTGTTCGATGAAATGCCGCTGAAGGACTTCAACTCCTGGGCCACCTTGATAGTTGCTTATGCTCACAATGGTGACTACCCGGAAGCTTTGAGATTGTTTCTGACCATGCTATACCGGCAGGAATATCATGTCGATATGTTTGAGTTTCCTCCATGGATCATGGCTTGCGTTGTCGACGCTTGTGCCTGCACGATGGATATGAGATTAGGGGAGCAACTCCATGGCTGCTGCCTAAAGTTGGGTCATGGTAATCATGATATGTTTGTTGCCACCTCCTTGATCAACTTTTACGGCAGATTGAGGTGCCACGAAGCTGCACACCGCGCTTCTATTGGACTCTCGCAGCCTAATGCCCTCACATGGACGGCTATAATGATCAATAACTCTAGAGGAGAGAGGTTTTTCGACTTGATCAGTGACTTTAAGGAAATAGGGAGGGCTGGGATAAAGAAGAACACTTGTATCATCTCTTGTGTCCTCAGGGCGTGTGCTAGGATGCATGATGATGGCTTCAGCGGCAGACAAGTTCATGCCAATGCCATCAAACTTGGAGTGGAATCCCATTCTTTCGTGCACTGTGGGTTGGTGGATATGTATGGAAGAAACGGGCTACTTAGAGATGCGAAACTGGTGTTTCAGACGGTCAACGATACAACATCTACTGCGTGTTGGAATGCCATGCTTACAAGTTACTTGCGGAATGGGTTACACATCGAAGCCCTTCAGTTTCTCTATCAGATGAAGGCAGATGGGTTGCAGCCTCAAGAATATCTGCTGGATCAAGTGAGGATTGCTTGCGCTAGTAATGGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

442

Amino Acids

49.49

Weight (kDa)

9.13

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31790
fragaria_vesca	FvH4_2g37080 FvH4_2g37240
rosa_chinensis	RchiOBHm_Chr6g0304481
rosa_laevigata	RLG00000010973
rosa_multiflora	Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii	Rroxscaffold_7G00163710
rosa_rugosa	Rorug06G0332100
rosa_samantha	Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana	Rw6G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	816
AccI	GTMKAC	1 cut(s)	687
AccII	CGCG	2 cut(s)	112, 837
AclWI	GGATC	2 cut(s)	677, 1299
AcuI	CTGAAG	3 cut(s)	554, 1009, 1220
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	3 cut(s)	96, 751, 873
AgsI	TTSAA	1 cut(s)	544
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	548
AleI	CACNNNNGTG	1 cut(s)	582
AluBI	AGCT	7 cut(s)	62, 117, 267, 338, 392, 599, 827
AluI	AGCT	7 cut(s)	62, 117, 267, 338, 392, 599, 827
Alw21I	GWGCWC	1 cut(s)	1089
Alw44I	GTGCAC	1 cut(s)	1085
AlwI	GGATC	2 cut(s)	677, 1299
AoxI	GGCC	3 cut(s)	405, 424, 552
ApaLI	GTGCAC	1 cut(s)	1085
Asp700I	GAANNNNTTC	2 cut(s)	539, 1233
AspLEI	GCGC	4 cut(s)	114, 389, 839, 1313
AspS9I	GGNCC	4 cut(s)	261, 406, 424, 552
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	500, 596
AvaII	GGWCC	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	1089
BaeI	ACNNNNGTAYC	2 cut(s)	958, 991
BanI	GGYRCC	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	306
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
Bbv12I	GWGCWC	1 cut(s)	1089
BccI	CCATC	6 cut(s)	289, 293, 700, 1013, 1061, 1256
BceAI	ACGGC	3 cut(s)	414, 820, 894
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	1 cut(s)	550
BclI	TGATCA	3 cut(s)	792, 888, 924
BcnI	CCSGG	1 cut(s)	593
BfaI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
BfmI	CTRYAG	2 cut(s)	9, 268
Bme1390I	CCNGG	2 cut(s)	550, 593
Bme18I	GGWCC	1 cut(s)	261
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	4 cut(s)	261, 406, 424, 552
BmiI	GGNNCC	3 cut(s)	262, 305, 818
BmrFI	CCNGG	2 cut(s)	550, 593
BmsI	GCATC	2 cut(s)	999, 1123
BpuEI	CTTGAG	1 cut(s)	1260
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	549, 665, 733
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 751, 873
Bse118I	RCCGGY	2 cut(s)	175, 627
Bse1I	ACTGG	2 cut(s)	34, 1146
Bse21I	CCTNAGG	1 cut(s)	992
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	3 cut(s)	549, 665, 733
BseGI	GGATG	4 cut(s)	157, 260, 304, 1014
BseLI	CCNNNNNNNGG	3 cut(s)	96, 751, 873
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	72, 1006
BseNI	ACTGG	2 cut(s)	34, 1146
BseRI	GAGGAG	1 cut(s)	918
BseSI	GKGCMC	1 cut(s)	1089
BseYI	CCCAGC	2 cut(s)	334, 953
BsgI	GTGCAG	2 cut(s)	685, 813
Bsh1236I	CGCG	2 cut(s)	112, 837
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	3 cut(s)	407, 426, 554
BshNI	GGYRCC	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	1089
BsiSI	CCGG	5 cut(s)	176, 190, 384, 593, 628
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	3 cut(s)	96, 751, 873
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	1192
BsnI	GGCC	3 cut(s)	407, 426, 554
Bsp1286I	GDGCHC	2 cut(s)	306, 1089
Bsp143I	GATC	5 cut(s)	669, 792, 888, 924, 1291
Bsp19I	CCATGG	2 cut(s)	665, 733
BspANI	GGCC	3 cut(s)	407, 426, 554
BspCNI	CTCAG	2 cut(s)	71, 1005
BspFNI	CGCG	2 cut(s)	112, 837
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	3 cut(s)	262, 305, 818
BspMAI	CTGCAG	2 cut(s)	13, 272
BspPI	GGATC	2 cut(s)	677, 1299
BspT107I	GGYRCC	1 cut(s)	816
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	2 cut(s)	175, 627
BsrI	ACTGG	2 cut(s)	34, 1146
BssAI	RCCGGY	2 cut(s)	175, 627
BssECI	CCNNGG	3 cut(s)	549, 665, 733
BssMI	GATC	5 cut(s)	669, 792, 888, 924, 1291
BssT1I	CCWWGG	2 cut(s)	665, 733
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	3 cut(s)	491, 1091, 1156
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	467, 679, 700, 1309
BstDEI	CTNAG	3 cut(s)	58, 992, 1127
BstDSI	CCRYGG	2 cut(s)	665, 733
BstEII	GGTNACC	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	157, 260, 304, 1014
BstFNI	CGCG	2 cut(s)	112, 837
BstHHI	GCGC	4 cut(s)	114, 389, 839, 1313
BstKTI	GATC	5 cut(s)	672, 795, 891, 927, 1294
BstMBI	GATC	5 cut(s)	669, 792, 888, 924, 1291
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	6 cut(s)	326, 329, 335, 628, 836, 1029
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	1 cut(s)	352
BstPI	GGTNACC	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	548, 591
BstSFI	CTRYAG	2 cut(s)	9, 268
BstSLI	GKGCMC	1 cut(s)	1089
BstUI	CGCG	2 cut(s)	112, 837
Bsu36I	CCTNAGG	1 cut(s)	992
BsuRI	GGCC	3 cut(s)	407, 426, 554
BtgI	CCRYGG	2 cut(s)	665, 733
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	4 cut(s)	157, 260, 304, 1014
BtsIMutI	CAGTG	3 cut(s)	41, 934, 1087
Cac8I	GCNNGC	4 cut(s)	467, 679, 700, 1309
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	4 cut(s)	114, 389, 839, 1313
Cfr10I	RCCGGY	2 cut(s)	175, 627
Cfr13I	GGNCC	4 cut(s)	261, 406, 424, 552
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	232
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	58, 992, 1127
DpnI	GATC	5 cut(s)	671, 794, 890, 926, 1293
DpnII	GATC	5 cut(s)	669, 792, 888, 924, 1291
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	665, 733
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	3 cut(s)	554, 1009, 1220
Eco81I	CCTNAGG	1 cut(s)	992
Eco91I	GGTNACC	1 cut(s)	99
EcoO65I	GGTNACC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	548
EcoT14I	CCWWGG	2 cut(s)	665, 733
EcoT22I	ATGCAT	1 cut(s)	1014
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	2 cut(s)	665, 733
FaqI	GGGAC	1 cut(s)	296
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	3 cut(s)	792, 888, 924
FblI	GTMKAC	1 cut(s)	687
FokI	GGATG	4 cut(s)	144, 267, 311, 1021
FriOI	GRGCYC	1 cut(s)	306
FspBI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
GlaI	GCGC	4 cut(s)	113, 388, 838, 1312
GsaI	CCCAGC	2 cut(s)	338, 957
HaeIII	GGCC	3 cut(s)	407, 426, 554
HapII	CCGG	5 cut(s)	176, 190, 384, 593, 628
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	4 cut(s)	114, 389, 839, 1313
Hin6I	GCGC	4 cut(s)	112, 387, 837, 1311
HinP1I	GCGC	4 cut(s)	112, 387, 837, 1311
HincII	GTYRAC	2 cut(s)	688, 1159
HindII	GTYRAC	2 cut(s)	688, 1159
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	5 cut(s)	54, 309, 380, 849, 1070
HpaII	CCGG	5 cut(s)	176, 190, 384, 593, 628
HphI	GGTGA	2 cut(s)	500, 596
Hpy166II	GTNNAC	3 cut(s)	688, 1087, 1159
Hpy188I	TCNGA	6 cut(s)	280, 308, 379, 615, 1152, 1251
Hpy188III	TCNNGA	5 cut(s)	51, 395, 767, 900, 1277
Hpy8I	GTNNAC	3 cut(s)	688, 1087, 1159
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	4 cut(s)	415, 529, 1244, 1249
HpyCH4III	ACNGT	3 cut(s)	491, 1091, 1156
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	7 cut(s)	11, 270, 702, 830, 1012, 1087, 1270
HpyF10VI	GCNNNNNNNGC	6 cut(s)	326, 329, 335, 628, 836, 1029
HpyF3I	CTNAG	3 cut(s)	58, 992, 1127
HpySE526I	ACGT	1 cut(s)	480
HspAI	GCGC	4 cut(s)	112, 387, 837, 1311
Ksp22I	TGATCA	3 cut(s)	792, 888, 924
Kzo9I	GATC	5 cut(s)	669, 792, 888, 924, 1291
LmnI	GCTCC	2 cut(s)	309, 724
LweI	GCATC	2 cut(s)	999, 1123
MaeI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	8 cut(s)	99, 431, 476, 481, 584, 929, 1202, 1218
MalI	GATC	5 cut(s)	671, 794, 890, 926, 1293
MboI	GATC	5 cut(s)	669, 792, 888, 924, 1291
MboII	GAAGA	7 cut(s)	235, 250, 253, 256, 259, 976, 1125
MhlI	GDGCHC	2 cut(s)	306, 1089
MluCI	AATT	2 cut(s)	153, 162
MlyI	GAGTC	3 cut(s)	318, 374, 843
MmeI	TCCRAC	3 cut(s)	165, 191, 1163
Mph1103I	ATGCAT	1 cut(s)	1014
MroXI	GAANNNNTTC	2 cut(s)	539, 1233
MseI	TTAA	2 cut(s)	180, 936
MslI	CAYNNNNRTG	4 cut(s)	34, 582, 1017, 1047
MspA1I	CMGCKG	4 cut(s)	267, 338, 532, 1029
MspI	CCGG	5 cut(s)	176, 190, 384, 593, 628
MspR9I	CCNGG	2 cut(s)	550, 593
Mva1269I	GAATGC	1 cut(s)	1192
MvaI	CCWGG	1 cut(s)	550
MvnI	CGCG	2 cut(s)	112, 837
MwoI	GCNNNNNNNGC	6 cut(s)	326, 329, 335, 628, 836, 1029
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	2 cut(s)	665, 733
NdeII	GATC	5 cut(s)	669, 792, 888, 924, 1291
NlaIV	GGNNCC	3 cut(s)	262, 305, 818
NmuCI	GTSAC	4 cut(s)	476, 481, 584, 929
NsiI	ATGCAT	1 cut(s)	1014
NspI	RCATGY	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	582
PagI	TCATGA	1 cut(s)	766
PctI	GAATGC	1 cut(s)	1192
PdmI	GAANNNNTTC	2 cut(s)	539, 1233
PfeI	GAWTC	2 cut(s)	54, 1070
PleI	GAGTC	3 cut(s)	317, 374, 843
PpsI	GAGTC	3 cut(s)	317, 374, 843
Psp6I	CCWGG	1 cut(s)	548
PspEI	GGTNACC	1 cut(s)	99
PspFI	CCCAGC	2 cut(s)	334, 953
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	3 cut(s)	262, 305, 818
PspPI	GGNCC	4 cut(s)	261, 406, 424, 552
PstI	CTGCAG	2 cut(s)	13, 272
PvuII	CAGCTG	2 cut(s)	267, 338
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	4 cut(s)	34, 582, 1017, 1047
SalI	GTCGAC	1 cut(s)	686
SaqAI	TTAA	2 cut(s)	180, 936
Sau3AI	GATC	5 cut(s)	669, 792, 888, 924, 1291
Sau96I	GGNCC	4 cut(s)	261, 406, 424, 552
SchI	GAGTC	3 cut(s)	318, 374, 843
ScrFI	CCNGG	2 cut(s)	550, 593
SduI	GDGCHC	2 cut(s)	306, 1089
SfaNI	GCATC	2 cut(s)	999, 1123
SfcI	CTRYAG	2 cut(s)	9, 268
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	4 cut(s)	34, 582, 1017, 1047
SmlI	CTYRAG	1 cut(s)	1275
SmoI	CTYRAG	1 cut(s)	1275
Sse9I	AATT	2 cut(s)	153, 162
SspMI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
StyD4I	CCNGG	2 cut(s)	548, 591
StyI	CCWWGG	2 cut(s)	665, 733
TaaI	ACNGT	3 cut(s)	491, 1091, 1156
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	6 cut(s)	396, 519, 645, 687, 918, 1227
TasI	AATT	2 cut(s)	153, 162
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	5 cut(s)	175, 292, 429, 532, 1032
TfiI	GAWTC	2 cut(s)	54, 1070
Tru1I	TTAA	2 cut(s)	180, 936
Tru9I	TTAA	2 cut(s)	180, 936
TscAI	CASTG	3 cut(s)	41, 934, 1094
TseFI	GTSAC	4 cut(s)	476, 481, 584, 929
Tsp45I	GTSAC	4 cut(s)	476, 481, 584, 929
TspDTI	ATGAA	4 cut(s)	146, 537, 1031, 1268
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	3 cut(s)	41, 934, 1094
VneI	GTGCAC	1 cut(s)	1085
VpaK11BI	GGWCC	1 cut(s)	261
XbaI	TCTAGA	2 cut(s)	50, 899
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	2 cut(s)	539, 1233
XspI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
Zsp2I	ATGCAT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.