Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016028

Physical Location & Seq

Genomic Coordinates Reverse (-)

66937304 .. 66938344

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG457500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGATGGGCTCCGAGTCCCCATAGCAGCAGCCCCAGCTGACAATGGCATTGGCATGTATGCTTCTCTCATCAACGATTGCTCGGACTCCGGCGCAGCTGTCGACTTACAGTCCCACCTTACTAGGAAAAGGAAGGGCCGCCGTAACCCACCACCGCCTCTACACTTGCTCAACCGCCTGCTTCTCCGTCACGTCACTAACGGTGGTTTAGACAATGCTCACCACCTGTTCGATGAAATGCCGCTCAAGGACTTCAACTCCTGGGCCACCTTGATAGTTGCTTATGCTCACAATGCCGACTACCCGGAGGCCTTGAGATTGTTTCTGACCATGCTGCACCAGCAGGAATATCATGTCGATATGTTTGAGTTTCCTCCATGGATCATGGCTTGCGTTGTCGACGCTTGTGCCTGCACGATGGATATGAGATTAGGGGAGCAACTCCACGGCTGCTGCCTAAAGTTGGGTCATGGTAATCATGATATGTTTGTTGCCACCTCCTTGATCAACTTTTACGGCAGATTGAGGTGCCACGAAGCTGCACACCGCGCTTCTATTGGACTCTCGCAGCCTAATGCCCTCACATGGACGGCCTTAATGGTCAATAACTCTAGAGGAGAGAGGTTTTTCGACGTGATCAGTGACTTTAAGGAAATAGGGAGGGCTGGGATAAAGAAGAACACTTGTATCATCTCTTGTGTCCTCAGGGCGTGTGCTAGGATGCATGATGATGGCTTCAGCGGCAGACAAGTTCATGCCAATGCCATCAAACTTGGAGTGGAATCCCATTCTTTCGTGCACTGTGGGTTGGTGGATATGTATGGAAGAAACGGGCTACTTAGAGATGCGAAACTGGTGTTTCAGACGGTCAACGATACAACATCTACTGCGTGTTGGAATGCCATGCTTACAAGTTACTTGCGGAATGGGTTACACATCGAAGCCCTTAAGTTTCTCCATCAGATGAAGGCAGATGGGTTGCAGCCTCAAGAATATCTGCTGGATCAAGTGAGGGTTGCTTGCGCTAGTAATGGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

346

Amino Acids

38.51

Weight (kDa)

7.28

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	295 - 331	5.4e-06	PPR repeat family
PPR	PF01535	298 - 327	2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31790
fragaria_vesca	FvH4_2g37080 FvH4_2g37240
rosa_chinensis	RchiOBHm_Chr6g0304481
rosa_laevigata	RLG00000010973
rosa_multiflora	Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii	Rroxscaffold_7G00163710
rosa_rugosa	Rorug06G0332100
rosa_samantha	Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana	Rw6G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	102, 399
AccII	CGCG	1 cut(s)	549
AciI	CCGC	7 cut(s)	139, 155, 175, 242, 547, 741, 922
AclWI	GGATC	2 cut(s)	389, 1011
AcuI	CTGAAG	1 cut(s)	721
AfiI	CCNNNNNNNGG	2 cut(s)	463, 585
AflII	CTTAAG	1 cut(s)	947
AgsI	TTSAA	1 cut(s)	256
AhdI	GACNNNNNGTC	1 cut(s)	109
AjiI	CACGTC	2 cut(s)	193, 634
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	38, 98, 539
AluI	AGCT	3 cut(s)	38, 98, 539
Alw21I	GWGCWC	1 cut(s)	801
Alw44I	GTGCAC	1 cut(s)	797
AlwI	GGATC	2 cut(s)	389, 1011
AoxI	GGCC	4 cut(s)	136, 264, 309, 591
ApaLI	GTGCAC	1 cut(s)	797
ApeKI	GCWGC	9 cut(s)	26, 29, 95, 334, 450, 453, 539, 568, 982
AspLEI	GCGC	3 cut(s)	95, 551, 1025
AspS9I	GGNCC	3 cut(s)	136, 264, 1034
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	1034
AxyI	CCTNAGG	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	801
BaeI	ACNNNNGTAYC	2 cut(s)	670, 703
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	801
BbvI	GCAGC	9 cut(s)	38, 41, 107, 321, 437, 440, 526, 580, 994
BccI	CCATC	5 cut(s)	412, 725, 773, 966, 968
BceAI	ACGGC	4 cut(s)	126, 463, 532, 606
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	262
BclI	TGATCA	2 cut(s)	504, 636
BcnI	CCSGG	1 cut(s)	305
BfaI	CTAG	4 cut(s)	123, 612, 717, 1026
BfrI	CTTAAG	1 cut(s)	947
Bme1390I	CCNGG	2 cut(s)	262, 305
Bme18I	GGWCC	1 cut(s)	1034
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgBI	CACGTC	2 cut(s)	193, 634
BmgT120I	GGNCC	3 cut(s)	136, 264, 1034
BmiI	GGNNCC	2 cut(s)	11, 530
BmrFI	CCNGG	2 cut(s)	262, 305
BmsI	GCATC	2 cut(s)	711, 835
BpuEI	CTTGAG	3 cut(s)	230, 334, 972
BpuMI	CCSGG	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	261, 377, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 585
Bse1I	ACTGG	1 cut(s)	858
Bse21I	CCTNAGG	1 cut(s)	704
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	261, 377, 445
BseGI	GGATG	2 cut(s)	10, 726
BseLI	CCNNNNNNNGG	2 cut(s)	463, 585
BseMII	CTCAG	1 cut(s)	718
BseNI	ACTGG	1 cut(s)	858
BseRI	GAGGAG	1 cut(s)	630
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	9 cut(s)	38, 41, 107, 321, 437, 440, 526, 580, 994
BseYI	CCCAGC	2 cut(s)	34, 665
BsgI	GTGCAG	3 cut(s)	320, 397, 525
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	4 cut(s)	138, 266, 311, 593
BshNI	GGYRCC	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	801
BsiSI	CCGG	2 cut(s)	90, 305
BslFI	GGGAC	2 cut(s)	2, 97
BslI	CCNNNNNNNGG	2 cut(s)	463, 585
BsmFI	GGGAC	2 cut(s)	2, 97
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	4 cut(s)	138, 266, 311, 593
Bsp1286I	GDGCHC	2 cut(s)	12, 801
Bsp143I	GATC	4 cut(s)	381, 504, 636, 1003
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	7 cut(s)	139, 155, 175, 242, 547, 741, 922
BspANI	GGCC	4 cut(s)	138, 266, 311, 593
BspCNI	CTCAG	1 cut(s)	717
BspFNI	CGCG	1 cut(s)	549
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	11, 530
BspPI	GGATC	2 cut(s)	389, 1011
BspT107I	GGYRCC	1 cut(s)	528
BspTI	CTTAAG	1 cut(s)	947
BsrBI	CCGCTC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	858
BssECI	CCNNGG	3 cut(s)	261, 377, 445
BssMI	GATC	4 cut(s)	381, 504, 636, 1003
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	4 cut(s)	111, 203, 803, 868
BstAFI	CTTAAG	1 cut(s)	947
BstC8I	GCNNGC	4 cut(s)	179, 391, 412, 1021
BstDEI	CTNAG	2 cut(s)	704, 839
BstDSI	CCRYGG	2 cut(s)	377, 445
BstF5I	GGATG	2 cut(s)	10, 726
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	3 cut(s)	95, 551, 1025
BstKTI	GATC	4 cut(s)	384, 507, 639, 1006
BstMBI	GATC	4 cut(s)	381, 504, 636, 1003
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 293, 340, 548, 741
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	260, 303
BstSLI	GKGCMC	1 cut(s)	801
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	9 cut(s)	38, 41, 107, 321, 437, 440, 526, 580, 994
Bsu36I	CCTNAGG	1 cut(s)	704
BsuRI	GGCC	4 cut(s)	138, 266, 311, 593
BtgI	CCRYGG	2 cut(s)	377, 445
BtrI	CACGTC	2 cut(s)	193, 634
BtsCI	GGATG	2 cut(s)	10, 726
BtsIMutI	CAGTG	2 cut(s)	646, 799
Cac8I	GCNNGC	4 cut(s)	179, 391, 412, 1021
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	3 cut(s)	95, 551, 1025
Cfr13I	GGNCC	3 cut(s)	136, 264, 1034
CseI	GACGC	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	704, 839
DpnI	GATC	4 cut(s)	383, 506, 638, 1005
DpnII	GATC	4 cut(s)	381, 504, 636, 1003
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1105I	GACNNNNNGTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	377
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	1034
Eco57I	CTGAAG	1 cut(s)	721
Eco81I	CCTNAGG	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	377
FaqI	GGGAC	2 cut(s)	2, 97
FbaI	TGATCA	2 cut(s)	504, 636
FblI	GTMKAC	2 cut(s)	102, 399
FokI	GGATG	2 cut(s)	17, 733
FriOI	GRGCYC	1 cut(s)	12
FspBI	CTAG	4 cut(s)	123, 612, 717, 1026
GlaI	GCGC	3 cut(s)	94, 550, 1024
GsaI	CCCAGC	2 cut(s)	38, 669
HaeIII	GGCC	4 cut(s)	138, 266, 311, 593
HapII	CCGG	2 cut(s)	90, 305
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	3 cut(s)	95, 551, 1025
Hin6I	GCGC	3 cut(s)	93, 549, 1023
HinP1I	GCGC	3 cut(s)	93, 549, 1023
HincII	GTYRAC	3 cut(s)	103, 400, 871
HindII	GTYRAC	3 cut(s)	103, 400, 871
HinfI	GANTC	4 cut(s)	15, 86, 561, 782
HpaII	CCGG	2 cut(s)	90, 305
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	4 cut(s)	103, 400, 799, 871
Hpy188I	TCNGA	5 cut(s)	14, 85, 327, 864, 963
Hpy188III	TCNNGA	3 cut(s)	479, 612, 989
Hpy8I	GTNNAC	4 cut(s)	103, 400, 799, 871
Hpy99I	CGWCG	2 cut(s)	404, 635
HpyAV	CCTTC	2 cut(s)	127, 961
HpyCH4III	ACNGT	4 cut(s)	111, 203, 803, 868
HpyCH4IV	ACGT	2 cut(s)	192, 633
HpyCH4V	TGCA	6 cut(s)	337, 414, 542, 724, 799, 982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 293, 340, 548, 741
HpyF3I	CTNAG	2 cut(s)	704, 839
HpySE526I	ACGT	2 cut(s)	192, 633
HspAI	GCGC	3 cut(s)	93, 549, 1023
Ksp22I	TGATCA	2 cut(s)	504, 636
Kzo9I	GATC	4 cut(s)	381, 504, 636, 1003
LmnI	GCTCC	2 cut(s)	15, 436
Lsp1109I	GCAGC	9 cut(s)	38, 41, 107, 321, 437, 440, 526, 580, 994
LweI	GCATC	2 cut(s)	711, 835
MaeI	CTAG	4 cut(s)	123, 612, 717, 1026
MaeII	ACGT	2 cut(s)	192, 633
MaeIII	GTNAC	6 cut(s)	143, 188, 193, 641, 914, 930
MalI	GATC	4 cut(s)	383, 506, 638, 1005
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	4 cut(s)	381, 504, 636, 1003
MboII	GAAGA	2 cut(s)	688, 837
MhlI	GDGCHC	2 cut(s)	12, 801
MlyI	GAGTC	3 cut(s)	24, 80, 555
MmeI	TCCRAC	1 cut(s)	875
Mph1103I	ATGCAT	1 cut(s)	726
MseI	TTAA	3 cut(s)	596, 648, 948
MslI	CAYNNNNRTG	3 cut(s)	53, 729, 759
MspA1I	CMGCKG	3 cut(s)	38, 98, 741
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	2 cut(s)	90, 305
MspR9I	CCNGG	2 cut(s)	262, 305
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	5 cut(s)	35, 293, 340, 548, 741
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	4 cut(s)	381, 504, 636, 1003
NlaIV	GGNNCC	2 cut(s)	11, 530
NmuCI	GTSAC	3 cut(s)	188, 193, 641
NsiI	ATGCAT	1 cut(s)	726
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	311
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	1 cut(s)	782
PleI	GAGTC	3 cut(s)	23, 80, 555
PpsI	GAGTC	3 cut(s)	23, 80, 555
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	2 cut(s)	34, 665
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	11, 530
PspPI	GGNCC	3 cut(s)	136, 264, 1034
PvuII	CAGCTG	2 cut(s)	38, 98
RseI	CAYNNNNRTG	3 cut(s)	53, 729, 759
SalI	GTCGAC	2 cut(s)	101, 398
SaqAI	TTAA	3 cut(s)	596, 648, 948
Sau3AI	GATC	4 cut(s)	381, 504, 636, 1003
Sau96I	GGNCC	3 cut(s)	136, 264, 1034
SchI	GAGTC	3 cut(s)	24, 80, 555
ScrFI	CCNGG	2 cut(s)	262, 305
SduI	GDGCHC	2 cut(s)	12, 801
SfaNI	GCATC	2 cut(s)	711, 835
SinI	GGWCC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	3 cut(s)	53, 729, 759
SmlI	CTYRAG	4 cut(s)	245, 313, 947, 987
SmoI	CTYRAG	4 cut(s)	245, 313, 947, 987
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	7 cut(s)	139, 155, 175, 242, 547, 741, 922
SspMI	CTAG	4 cut(s)	123, 612, 717, 1026
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	260, 303
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	4 cut(s)	111, 203, 803, 868
TaiI	ACGT	2 cut(s)	195, 636
TaqI	TCGA	6 cut(s)	102, 231, 357, 399, 630, 939
TauI	GCSGC	3 cut(s)	141, 244, 744
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	3 cut(s)	596, 648, 948
Tru9I	TTAA	3 cut(s)	596, 648, 948
TscAI	CASTG	2 cut(s)	646, 806
TseFI	GTSAC	3 cut(s)	188, 193, 641
TseI	GCWGC	9 cut(s)	26, 29, 95, 334, 450, 453, 539, 568, 982
Tsp45I	GTSAC	3 cut(s)	188, 193, 641
TspDTI	ATGAA	3 cut(s)	249, 743, 980
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	646, 806
Vha464I	CTTAAG	1 cut(s)	947
VneI	GTGCAC	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	1034
XbaI	TCTAGA	1 cut(s)	611
XceI	RCATGY	1 cut(s)	58
XmiI	GTMKAC	2 cut(s)	102, 399
XspI	CTAG	4 cut(s)	123, 612, 717, 1026
Zsp2I	ATGCAT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.