Rh6CG457600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016028
Physical Location & Seq
Forward (+)
63236439 .. 63238198
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG457600.1

Sequence Viewer

Length: 1329 bp
ATGGGAACTGCAGCACCTCAACAATACACATACCAGTGCTCTAGATTCTCAGCTACCAACCACAACAACCCGTCCATATCCAAAGTCAGGTTACCCCTCCCGCGCAGCTCAAAATCAAAATCAAACACTCTTGCCTCCAACAATACTACAACTCCTCCAATTCCAACACCGCTGGTTAAACCCCACCGGAATAGGAATAATAATAATGATAACATTAGGAAGGGGAAGAAGAAGAAGAAGAAGAATGGATGTGGGTCCAGCTGCAGCACCTCCGATATTCTGCGGCTGATGGATGGGCTCCGAGTCCCCGTAGCAGCAGCCCCAGCTGACAATGGCATTGGCATGTATGCTTCTCTCATCAACGATTGCTCGGACTCCGGCGCAGCTCTCGACTTACAGTCCCACCTTACTAGGAAAAGGAAGGGCCGCCGTAACCCACCACCGCCTCTACACTTGCTCAACCGCCTGCTTCTCCGTCACGTCACTAACGGTGGTTTAGACAATGCTCACCACCTGTTCGATGAAATGCCGCTTAAGGACTTCAACTCCTGGGCCACCTTGATAGTTGCTTATGCTCACAATGCCGACTACCCGGAGGCCTTGAGATTGTTTCTGACCATGCTGCACCAGCAGGAATATCATGTCGATATGTTTGAGTTTCCTCCATGGATCATGGCTTGCGTTGTTGACGCTTGTGCCTGCACGATGGATATGAGATTAGGGGAGCAACTCCACGGCTGCTGCCTAAAGTTGGGTCATGGTAATCATGATATGTTTGTTGCCACCTCCTTGATCAACTTTTACGGCAGATTGAGGTGCCACGAAGCTGCACACCGCGCTTCTATTGGACTCTCGCAGCCTAATGCCCTCAAATGGACGGCCTTAATGGTCAATAACTCTAGAGGAGAGAGGTTTTTCGACGTGATCAGTGACTTTAAGGAAATAGGGAGGGCTGGGATAAAGAAGAACACTTGTATCATCTCTTGTGTCCTCAGGGCGTGTGCTAGGATGCATGATGATGGCTTCAGCGGCAGACAAGTTCATGCCAATGCCATCAAACTTGGAGTGGAATCCCATTCTTTCGTGCACTGTGGGTTGGTGGATATGTATGGAAGAAACGGGCTACTTAGAGATGCGAAACTGGTGTTTCAGACGGTCAACGATACAACATCTACTGCGTGTTGGAATGCCATGCTTACAAGTTACTTGCGGAATGGGTTACACATCGAAGCCCTTAAGTTTCTCTATCAGATGAAGGCAGATGGGTTGCAGCCTCAAGAATATCTGCTGGATCAAGTGAGGGTTGCTTGCGCTAGTAATGGTCCATAA

Protein Analysis

442

Amino Acids

49.11

Weight (kDa)

9.28

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 394 - 423 5.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31790
fragaria_vesca FvH4_2g37080 FvH4_2g37240
rosa_chinensis RchiOBHm_Chr6g0304481
rosa_laevigata RLG00000010973
rosa_multiflora Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii Rroxscaffold_7G00163710
rosa_rugosa Rorug06G0332100
rosa_samantha Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana Rw6G038620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 816
AccII CGCG 2 cut(s) 103, 837
AclWI GGATC 2 cut(s) 677, 1299
AcuI CTGAAG 1 cut(s) 1009
AfiI CCNNNNNNNGG 3 cut(s) 87, 751, 873
AflII CTTAAG 2 cut(s) 533, 1235
AgsI TTSAA 1 cut(s) 544
AhdI GACNNNNNGTC 1 cut(s) 397
AjiI CACGTC 2 cut(s) 481, 922
AjnI CCWGG 1 cut(s) 548
AluBI AGCT 6 cut(s) 53, 108, 261, 326, 386, 827
AluI AGCT 6 cut(s) 53, 108, 261, 326, 386, 827
Alw21I GWGCWC 2 cut(s) 41, 1089
Alw44I GTGCAC 1 cut(s) 1085
AlwI GGATC 2 cut(s) 677, 1299
AoxI GGCC 4 cut(s) 424, 552, 597, 879
ApaLI GTGCAC 1 cut(s) 1085
AspLEI GCGC 4 cut(s) 105, 383, 839, 1313
AspS9I GGNCC 4 cut(s) 255, 424, 552, 1322
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 1 cut(s) 500
AvaII GGWCC 2 cut(s) 255, 1322
AxyI CCTNAGG 1 cut(s) 992
BaeGI GKGCMC 1 cut(s) 1089
BaeI ACNNNNGTAYC 2 cut(s) 958, 991
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 41, 1089
BccI CCATC 6 cut(s) 283, 287, 700, 1013, 1061, 1256
BceAI ACGGC 4 cut(s) 414, 751, 820, 894
BciT130I CCWGG 1 cut(s) 550
BclI TGATCA 2 cut(s) 792, 924
BcnI CCSGG 1 cut(s) 593
BfaI CTAG 5 cut(s) 42, 411, 900, 1005, 1314
BfmI CTRYAG 2 cut(s) 9, 262
BfrI CTTAAG 2 cut(s) 533, 1235
Bme1390I CCNGG 2 cut(s) 550, 593
Bme18I GGWCC 2 cut(s) 255, 1322
BmeRI GACNNNNNGTC 1 cut(s) 397
BmgBI CACGTC 2 cut(s) 481, 922
BmgT120I GGNCC 4 cut(s) 255, 424, 552, 1322
BmiI GGNNCC 3 cut(s) 256, 299, 818
BmrFI CCNGG 2 cut(s) 550, 593
BmsI GCATC 2 cut(s) 999, 1123
BpuEI CTTGAG 2 cut(s) 622, 1260
BpuMI CCSGG 1 cut(s) 593
BsaJI CCNNGG 3 cut(s) 549, 665, 733
BsaWI WCCGGW 1 cut(s) 186
BsaXI ACNNNNNCTCC 6 cut(s) 136, 139, 166, 169, 530, 560
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 751, 873
Bse1I ACTGG 2 cut(s) 34, 1146
Bse21I CCTNAGG 1 cut(s) 992
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 3 cut(s) 549, 665, 733
BseGI GGATG 3 cut(s) 254, 298, 1014
BseLI CCNNNNNNNGG 3 cut(s) 87, 751, 873
BseMII CTCAG 2 cut(s) 63, 1006
BseNI ACTGG 2 cut(s) 34, 1146
BseRI GAGGAG 2 cut(s) 144, 918
BseSI GKGCMC 1 cut(s) 1089
BseYI CCCAGC 2 cut(s) 322, 953
BsgI GTGCAG 3 cut(s) 608, 685, 813
Bsh1236I CGCG 2 cut(s) 103, 837
BshFI GGCC 4 cut(s) 426, 554, 599, 881
BshNI GGYRCC 1 cut(s) 816
BsiHKAI GWGCWC 2 cut(s) 41, 1089
BsiSI CCGG 3 cut(s) 187, 378, 593
BslFI GGGAC 2 cut(s) 290, 385
BslI CCNNNNNNNGG 3 cut(s) 87, 751, 873
BsmFI GGGAC 2 cut(s) 290, 385
BsmI GAATGC 1 cut(s) 1192
BsnI GGCC 4 cut(s) 426, 554, 599, 881
Bsp1286I GDGCHC 3 cut(s) 41, 300, 1089
Bsp143I GATC 4 cut(s) 669, 792, 924, 1291
Bsp19I CCATGG 1 cut(s) 665
BspANI GGCC 4 cut(s) 426, 554, 599, 881
BspCNI CTCAG 2 cut(s) 62, 1005
BspFNI CGCG 2 cut(s) 103, 837
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 3 cut(s) 256, 299, 818
BspMAI CTGCAG 2 cut(s) 13, 266
BspPI GGATC 2 cut(s) 677, 1299
BspT107I GGYRCC 1 cut(s) 816
BspTI CTTAAG 2 cut(s) 533, 1235
BsrI ACTGG 2 cut(s) 34, 1146
BssECI CCNNGG 3 cut(s) 549, 665, 733
BssMI GATC 4 cut(s) 669, 792, 924, 1291
BssT1I CCWWGG 1 cut(s) 665
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 4 cut(s) 399, 491, 1091, 1156
BstAFI CTTAAG 2 cut(s) 533, 1235
BstC8I GCNNGC 4 cut(s) 467, 679, 700, 1309
BstDEI CTNAG 3 cut(s) 49, 992, 1127
BstDSI CCRYGG 2 cut(s) 665, 733
BstEII GGTNACC 1 cut(s) 90
BstF5I GGATG 3 cut(s) 254, 298, 1014
BstFNI CGCG 2 cut(s) 103, 837
BstHHI GCGC 4 cut(s) 105, 383, 839, 1313
BstKTI GATC 4 cut(s) 672, 795, 927, 1294
BstMBI GATC 4 cut(s) 669, 792, 924, 1291
BstMWI GCNNNNNNNGC 5 cut(s) 323, 581, 628, 836, 1029
BstNI CCWGG 1 cut(s) 550
BstNSI RCATGY 1 cut(s) 346
BstPI GGTNACC 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 548, 591
BstSFI CTRYAG 2 cut(s) 9, 262
BstSLI GKGCMC 1 cut(s) 1089
BstUI CGCG 2 cut(s) 103, 837
Bsu36I CCTNAGG 1 cut(s) 992
BsuRI GGCC 4 cut(s) 426, 554, 599, 881
BtgI CCRYGG 2 cut(s) 665, 733
BtrI CACGTC 2 cut(s) 481, 922
BtsCI GGATG 3 cut(s) 254, 298, 1014
BtsIMutI CAGTG 3 cut(s) 41, 934, 1087
Cac8I GCNNGC 4 cut(s) 467, 679, 700, 1309
CciI TCATGA 1 cut(s) 766
CfoI GCGC 4 cut(s) 105, 383, 839, 1313
Cfr13I GGNCC 4 cut(s) 255, 424, 552, 1322
CseI GACGC 1 cut(s) 698
DdeI CTNAG 3 cut(s) 49, 992, 1127
DpnI GATC 4 cut(s) 671, 794, 926, 1293
DpnII GATC 4 cut(s) 669, 792, 924, 1291
DriI GACNNNNNGTC 1 cut(s) 397
Eam1105I GACNNNNNGTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 665
Eco147I AGGCCT 1 cut(s) 599
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 255, 1322
Eco57I CTGAAG 1 cut(s) 1009
Eco81I CCTNAGG 1 cut(s) 992
Eco91I GGTNACC 1 cut(s) 90
EcoO65I GGTNACC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 1 cut(s) 665
EcoT22I ATGCAT 1 cut(s) 1014
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 665
FaqI GGGAC 2 cut(s) 290, 385
FauI CCCGC 1 cut(s) 108
FbaI TGATCA 2 cut(s) 792, 924
FokI GGATG 3 cut(s) 261, 305, 1021
FriOI GRGCYC 1 cut(s) 300
FspBI CTAG 5 cut(s) 42, 411, 900, 1005, 1314
GlaI GCGC 4 cut(s) 104, 382, 838, 1312
GsaI CCCAGC 2 cut(s) 326, 957
HaeIII GGCC 4 cut(s) 426, 554, 599, 881
HapII CCGG 3 cut(s) 187, 378, 593
HgaI GACGC 1 cut(s) 698
HhaI GCGC 4 cut(s) 105, 383, 839, 1313
Hin6I GCGC 4 cut(s) 103, 381, 837, 1311
HinP1I GCGC 4 cut(s) 103, 381, 837, 1311
HincII GTYRAC 2 cut(s) 688, 1159
HindII GTYRAC 2 cut(s) 688, 1159
HinfI GANTC 5 cut(s) 45, 303, 374, 849, 1070
HpaII CCGG 3 cut(s) 187, 378, 593
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 3 cut(s) 688, 1087, 1159
Hpy188I TCNGA 6 cut(s) 274, 302, 373, 615, 1152, 1251
Hpy188III TCNNGA 5 cut(s) 42, 389, 767, 900, 1277
Hpy8I GTNNAC 3 cut(s) 688, 1087, 1159
Hpy99I CGWCG 1 cut(s) 923
HpyAV CCTTC 3 cut(s) 214, 415, 1249
HpyCH4III ACNGT 4 cut(s) 399, 491, 1091, 1156
HpyCH4IV ACGT 2 cut(s) 480, 921
HpyCH4V TGCA 8 cut(s) 11, 264, 625, 702, 830, 1012, 1087, 1270
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 581, 628, 836, 1029
HpyF3I CTNAG 3 cut(s) 49, 992, 1127
HpySE526I ACGT 2 cut(s) 480, 921
HspAI GCGC 4 cut(s) 103, 381, 837, 1311
Ksp22I TGATCA 2 cut(s) 792, 924
Kzo9I GATC 4 cut(s) 669, 792, 924, 1291
LmnI GCTCC 2 cut(s) 303, 724
LweI GCATC 2 cut(s) 999, 1123
MaeI CTAG 5 cut(s) 42, 411, 900, 1005, 1314
MaeII ACGT 2 cut(s) 480, 921
MaeIII GTNAC 7 cut(s) 90, 431, 476, 481, 929, 1202, 1218
MalI GATC 4 cut(s) 671, 794, 926, 1293
MboI GATC 4 cut(s) 669, 792, 924, 1291
MboII GAAGA 8 cut(s) 238, 241, 244, 247, 250, 253, 976, 1125
MhlI GDGCHC 3 cut(s) 41, 300, 1089
MluCI AATT 1 cut(s) 159
MlyI GAGTC 3 cut(s) 312, 368, 843
MmeI TCCRAC 3 cut(s) 162, 188, 1163
Mph1103I ATGCAT 1 cut(s) 1014
MseI TTAA 5 cut(s) 177, 534, 884, 936, 1236
MslI CAYNNNNRTG 4 cut(s) 34, 341, 1017, 1047
MspA1I CMGCKG 4 cut(s) 172, 261, 326, 1029
MspCI CTTAAG 2 cut(s) 533, 1235
MspI CCGG 3 cut(s) 187, 378, 593
MspR9I CCNGG 2 cut(s) 550, 593
Mva1269I GAATGC 1 cut(s) 1192
MvaI CCWGG 1 cut(s) 550
MvnI CGCG 2 cut(s) 103, 837
MwoI GCNNNNNNNGC 5 cut(s) 323, 581, 628, 836, 1029
NciI CCSGG 1 cut(s) 593
NcoI CCATGG 1 cut(s) 665
NdeII GATC 4 cut(s) 669, 792, 924, 1291
NlaIV GGNNCC 3 cut(s) 256, 299, 818
NmuCI GTSAC 3 cut(s) 476, 481, 929
NsiI ATGCAT 1 cut(s) 1014
NspI RCATGY 1 cut(s) 346
PagI TCATGA 1 cut(s) 766
PceI AGGCCT 1 cut(s) 599
PctI GAATGC 1 cut(s) 1192
PfeI GAWTC 2 cut(s) 45, 1070
PleI GAGTC 3 cut(s) 311, 368, 843
PpsI GAGTC 3 cut(s) 311, 368, 843
Psp6I CCWGG 1 cut(s) 548
PspEI GGTNACC 1 cut(s) 90
PspFI CCCAGC 2 cut(s) 322, 953
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 3 cut(s) 256, 299, 818
PspPI GGNCC 4 cut(s) 255, 424, 552, 1322
PstI CTGCAG 2 cut(s) 13, 266
PvuII CAGCTG 2 cut(s) 261, 326
RseI CAYNNNNRTG 4 cut(s) 34, 341, 1017, 1047
SaqAI TTAA 5 cut(s) 177, 534, 884, 936, 1236
Sau3AI GATC 4 cut(s) 669, 792, 924, 1291
Sau96I GGNCC 4 cut(s) 255, 424, 552, 1322
SchI GAGTC 3 cut(s) 312, 368, 843
ScrFI CCNGG 2 cut(s) 550, 593
SduI GDGCHC 3 cut(s) 41, 300, 1089
SfaNI GCATC 2 cut(s) 999, 1123
SfcI CTRYAG 2 cut(s) 9, 262
SinI GGWCC 2 cut(s) 255, 1322
SmiMI CAYNNNNRTG 4 cut(s) 34, 341, 1017, 1047
SmlI CTYRAG 4 cut(s) 533, 601, 1235, 1275
SmoI CTYRAG 4 cut(s) 533, 601, 1235, 1275
Sse9I AATT 1 cut(s) 159
SseBI AGGCCT 1 cut(s) 599
SspMI CTAG 5 cut(s) 42, 411, 900, 1005, 1314
StuI AGGCCT 1 cut(s) 599
StyD4I CCNGG 2 cut(s) 548, 591
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 4 cut(s) 399, 491, 1091, 1156
TaiI ACGT 2 cut(s) 483, 924
TaqI TCGA 5 cut(s) 390, 519, 645, 918, 1227
TasI AATT 1 cut(s) 159
TauI GCSGC 4 cut(s) 286, 429, 532, 1032
TfiI GAWTC 2 cut(s) 45, 1070
Tru1I TTAA 5 cut(s) 177, 534, 884, 936, 1236
Tru9I TTAA 5 cut(s) 177, 534, 884, 936, 1236
TscAI CASTG 3 cut(s) 41, 934, 1094
TseFI GTSAC 3 cut(s) 476, 481, 929
Tsp45I GTSAC 3 cut(s) 476, 481, 929
TspDTI ATGAA 3 cut(s) 537, 1031, 1268
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 3 cut(s) 41, 934, 1094
Vha464I CTTAAG 2 cut(s) 533, 1235
VneI GTGCAC 1 cut(s) 1085
VpaK11BI GGWCC 2 cut(s) 255, 1322
XbaI TCTAGA 2 cut(s) 41, 899
XceI RCATGY 1 cut(s) 346
XspI CTAG 5 cut(s) 42, 411, 900, 1005, 1314
Zsp2I ATGCAT 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.