Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0016028

Physical Location & Seq

Genomic Coordinates Forward (+)

229743 .. 231071

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgggaaccgcagcacctcaacaatacacataccaatggcaatgccactctagattctcagctaccaaccacaacaacccgaacccgtccatatccaaagtcaggttacccctcccgcgcagctcaaaatcaaacactcttgcctccaacaatactacaattcgtccaattccaacaccgccggttaaaccccaccggaataggaataataatgatgatattaggaagaggaagtacaacaagaagaagaagaatggatgtgggtccagctgcagcacctccgatattctgcggctgatggatgggctccgagtccccgtggcagcagcagccccagctgacaatggcatgtatgcttctctcatcaacgattgctcggactccggcgcagctctcgacttacaggcccaccttactaggaagggccgccgtaacccaccaccgcctctacacttgctcaaccgcctgcttgtccgtcacgtcgctaacggtcgtttagacaatgctcaccacctgttcgatgaaatgccgcataaggacttcaactcctgggccaccttgatagttgcttatgctcacaatggtgactacccggaagctttgagattgtttctgaccatgctataccagcaggaatatcatgtcgatatgtttgagtttcctccatggatcatggcttgcgttgtcgacgcttgtgcctgcacaatggatatgagattaggggagcaactccatggctgctgcctaaagttgggtcatggtaatcatgatatgtttgttgccacctccttgatcaacttttacggcagattgaggtgccacaaagctgcacaccgcgcttctattggactctcgcagcctaatgccttcacatggacggctataatgatcaataactctagaggagagaggtttttcgacttgatcagtgactttaaggaaatagggagggctgggataaagaagaacacttgtatcatctcttgtgtcctcagggcgtgtgctaggatgcatgatgatggcttcagcggcagacaagttcatgccaatgccatcaaacttggagtggaatcccattctttcgtgcactgtgggttggtggatatgtatggaagaaacgggctacttagagatgcgaaactggtgtttcagacggtcaacgatacaacatctactgcgtgttggaatgccatgcttacaagttacttgcggaatgggttacacatcgaagcccttaagtttctgtatcagatgaaggcagatgggttgcagcctcaagaatatctgctggatcaagtgaggattgcttgcgctagtaatggtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

442

Amino Acids

49.5

Weight (kDa)

9.24

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31790
fragaria_vesca	FvH4_2g37080 FvH4_2g37240
rosa_chinensis	RchiOBHm_Chr6g0304481
rosa_laevigata	RLG00000010973
rosa_multiflora	Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii	Rroxscaffold_7G00163710
rosa_rugosa	Rorug06G0332100
rosa_samantha	Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana	Rw6G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	816
AccI	GTMKAC	1 cut(s)	687
AccII	CGCG	2 cut(s)	118, 837
AclWI	GGATC	2 cut(s)	677, 1299
AcuI	CTGAAG	1 cut(s)	1009
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	102, 751, 873
AflII	CTTAAG	1 cut(s)	1235
AgsI	TTSAA	1 cut(s)	544
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	548
AleI	CACNNNNGTG	1 cut(s)	582
AluBI	AGCT	7 cut(s)	62, 123, 270, 338, 392, 599, 827
AluI	AGCT	7 cut(s)	62, 123, 270, 338, 392, 599, 827
Alw21I	GWGCWC	1 cut(s)	1089
Alw44I	GTGCAC	1 cut(s)	1085
AlwI	GGATC	2 cut(s)	677, 1299
AoxI	GGCC	3 cut(s)	405, 424, 552
ApaLI	GTGCAC	1 cut(s)	1085
AspLEI	GCGC	4 cut(s)	120, 389, 839, 1313
AspS9I	GGNCC	4 cut(s)	264, 406, 424, 552
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	500, 596
AvaII	GGWCC	1 cut(s)	264
AxyI	CCTNAGG	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	1089
BaeI	ACNNNNGTAYC	2 cut(s)	958, 991
BanI	GGYRCC	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
Bbv12I	GWGCWC	1 cut(s)	1089
BccI	CCATC	5 cut(s)	292, 296, 1013, 1061, 1256
BceAI	ACGGC	3 cut(s)	414, 820, 894
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	1 cut(s)	550
BclI	TGATCA	3 cut(s)	792, 888, 924
BcnI	CCSGG	1 cut(s)	593
BfaI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
BfmI	CTRYAG	1 cut(s)	271
BfrI	CTTAAG	1 cut(s)	1235
Bme1390I	CCNGG	2 cut(s)	550, 593
Bme18I	GGWCC	1 cut(s)	264
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	4 cut(s)	264, 406, 424, 552
BmiI	GGNNCC	4 cut(s)	7, 265, 308, 818
BmrFI	CCNGG	2 cut(s)	550, 593
BmsI	GCATC	2 cut(s)	999, 1123
BpuEI	CTTGAG	1 cut(s)	1260
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	4 cut(s)	318, 549, 665, 733
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 751, 873
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	1146
Bse21I	CCTNAGG	1 cut(s)	992
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	4 cut(s)	318, 549, 665, 733
BseGI	GGATG	3 cut(s)	263, 307, 1014
BseLI	CCNNNNNNNGG	3 cut(s)	102, 751, 873
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	72, 1006
BseNI	ACTGG	1 cut(s)	1146
BseRI	GAGGAG	1 cut(s)	918
BseSI	GKGCMC	1 cut(s)	1089
BseYI	CCCAGC	2 cut(s)	334, 953
BsgI	GTGCAG	2 cut(s)	685, 813
Bsh1236I	CGCG	2 cut(s)	118, 837
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	3 cut(s)	407, 426, 554
BshNI	GGYRCC	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	1089
BsiSI	CCGG	4 cut(s)	182, 196, 384, 593
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	102, 751, 873
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	1192
BsnI	GGCC	3 cut(s)	407, 426, 554
Bsp1286I	GDGCHC	2 cut(s)	309, 1089
Bsp143I	GATC	5 cut(s)	669, 792, 888, 924, 1291
Bsp19I	CCATGG	2 cut(s)	665, 733
BspANI	GGCC	3 cut(s)	407, 426, 554
BspCNI	CTCAG	2 cut(s)	71, 1005
BspFNI	CGCG	2 cut(s)	118, 837
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	4 cut(s)	7, 265, 308, 818
BspMAI	CTGCAG	1 cut(s)	275
BspPI	GGATC	2 cut(s)	677, 1299
BspT107I	GGYRCC	1 cut(s)	816
BspTI	CTTAAG	1 cut(s)	1235
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	1146
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	4 cut(s)	318, 549, 665, 733
BssMI	GATC	5 cut(s)	669, 792, 888, 924, 1291
BssT1I	CCWWGG	2 cut(s)	665, 733
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	3 cut(s)	491, 1091, 1156
Bst6I	CTCTTC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	1235
BstC8I	GCNNGC	4 cut(s)	467, 679, 700, 1309
BstDEI	CTNAG	3 cut(s)	58, 992, 1127
BstDSI	CCRYGG	3 cut(s)	318, 665, 733
BstEII	GGTNACC	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	263, 307, 1014
BstFNI	CGCG	2 cut(s)	118, 837
BstHHI	GCGC	4 cut(s)	120, 389, 839, 1313
BstKTI	GATC	5 cut(s)	672, 795, 891, 927, 1294
BstMBI	GATC	5 cut(s)	669, 792, 888, 924, 1291
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 335, 628, 836, 1029
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	1 cut(s)	352
BstPI	GGTNACC	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	548, 591
BstSFI	CTRYAG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	1089
BstUI	CGCG	2 cut(s)	118, 837
Bsu36I	CCTNAGG	1 cut(s)	992
BsuRI	GGCC	3 cut(s)	407, 426, 554
BtgI	CCRYGG	3 cut(s)	318, 665, 733
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	3 cut(s)	263, 307, 1014
BtsIMutI	CAGTG	2 cut(s)	934, 1087
Cac8I	GCNNGC	4 cut(s)	467, 679, 700, 1309
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	4 cut(s)	120, 389, 839, 1313
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	4 cut(s)	264, 406, 424, 552
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	235
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	3 cut(s)	58, 992, 1127
DpnI	GATC	5 cut(s)	671, 794, 890, 926, 1293
DpnII	GATC	5 cut(s)	669, 792, 888, 924, 1291
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	665, 733
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	1009
Eco81I	CCTNAGG	1 cut(s)	992
Eco91I	GGTNACC	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	548
EcoT14I	CCWWGG	2 cut(s)	665, 733
EcoT22I	ATGCAT	1 cut(s)	1014
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	2 cut(s)	665, 733
FaqI	GGGAC	1 cut(s)	299
FauI	CCCGC	1 cut(s)	123
FbaI	TGATCA	3 cut(s)	792, 888, 924
FblI	GTMKAC	1 cut(s)	687
FokI	GGATG	3 cut(s)	270, 314, 1021
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
GlaI	GCGC	4 cut(s)	119, 388, 838, 1312
GsaI	CCCAGC	2 cut(s)	338, 957
HaeIII	GGCC	3 cut(s)	407, 426, 554
HapII	CCGG	4 cut(s)	182, 196, 384, 593
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	4 cut(s)	120, 389, 839, 1313
Hin6I	GCGC	4 cut(s)	118, 387, 837, 1311
HinP1I	GCGC	4 cut(s)	118, 387, 837, 1311
HincII	GTYRAC	2 cut(s)	688, 1159
HindII	GTYRAC	2 cut(s)	688, 1159
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	5 cut(s)	54, 312, 380, 849, 1070
HpaII	CCGG	4 cut(s)	182, 196, 384, 593
HphI	GGTGA	2 cut(s)	500, 596
Hpy166II	GTNNAC	3 cut(s)	688, 1087, 1159
Hpy188I	TCNGA	6 cut(s)	283, 311, 379, 615, 1152, 1251
Hpy188III	TCNNGA	5 cut(s)	51, 395, 767, 900, 1277
Hpy8I	GTNNAC	3 cut(s)	688, 1087, 1159
Hpy99I	CGWCG	2 cut(s)	485, 692
HpyAV	CCTTC	3 cut(s)	415, 877, 1249
HpyCH4III	ACNGT	3 cut(s)	491, 1091, 1156
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	6 cut(s)	273, 702, 830, 1012, 1087, 1270
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 335, 628, 836, 1029
HpyF3I	CTNAG	3 cut(s)	58, 992, 1127
HpySE526I	ACGT	1 cut(s)	480
HspAI	GCGC	4 cut(s)	118, 387, 837, 1311
Ksp22I	TGATCA	3 cut(s)	792, 888, 924
Kzo9I	GATC	5 cut(s)	669, 792, 888, 924, 1291
LmnI	GCTCC	2 cut(s)	312, 724
LweI	GCATC	2 cut(s)	999, 1123
MaeI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	7 cut(s)	105, 431, 476, 584, 929, 1202, 1218
MalI	GATC	5 cut(s)	671, 794, 890, 926, 1293
MboI	GATC	5 cut(s)	669, 792, 888, 924, 1291
MboII	GAAGA	6 cut(s)	238, 256, 259, 262, 976, 1125
MhlI	GDGCHC	2 cut(s)	309, 1089
MluCI	AATT	2 cut(s)	159, 168
MlyI	GAGTC	3 cut(s)	321, 374, 843
MmeI	TCCRAC	3 cut(s)	171, 197, 1163
Mph1103I	ATGCAT	1 cut(s)	1014
MseI	TTAA	3 cut(s)	186, 936, 1236
MslI	CAYNNNNRTG	4 cut(s)	34, 582, 1017, 1047
MspA1I	CMGCKG	3 cut(s)	270, 338, 1029
MspCI	CTTAAG	1 cut(s)	1235
MspI	CCGG	4 cut(s)	182, 196, 384, 593
MspR9I	CCNGG	2 cut(s)	550, 593
Mva1269I	GAATGC	1 cut(s)	1192
MvaI	CCWGG	1 cut(s)	550
MvnI	CGCG	2 cut(s)	118, 837
MwoI	GCNNNNNNNGC	5 cut(s)	329, 335, 628, 836, 1029
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	2 cut(s)	665, 733
NdeII	GATC	5 cut(s)	669, 792, 888, 924, 1291
NlaIV	GGNNCC	4 cut(s)	7, 265, 308, 818
NmuCI	GTSAC	3 cut(s)	476, 584, 929
NsiI	ATGCAT	1 cut(s)	1014
NspI	RCATGY	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	582
PagI	TCATGA	1 cut(s)	766
PctI	GAATGC	1 cut(s)	1192
PfeI	GAWTC	2 cut(s)	54, 1070
PleI	GAGTC	3 cut(s)	320, 374, 843
PpsI	GAGTC	3 cut(s)	320, 374, 843
Psp6I	CCWGG	1 cut(s)	548
PspEI	GGTNACC	1 cut(s)	105
PspFI	CCCAGC	2 cut(s)	334, 953
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	4 cut(s)	7, 265, 308, 818
PspPI	GGNCC	4 cut(s)	264, 406, 424, 552
PstI	CTGCAG	1 cut(s)	275
PvuII	CAGCTG	2 cut(s)	270, 338
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	4 cut(s)	34, 582, 1017, 1047
SalI	GTCGAC	1 cut(s)	686
SaqAI	TTAA	3 cut(s)	186, 936, 1236
Sau3AI	GATC	5 cut(s)	669, 792, 888, 924, 1291
Sau96I	GGNCC	4 cut(s)	264, 406, 424, 552
SchI	GAGTC	3 cut(s)	321, 374, 843
ScrFI	CCNGG	2 cut(s)	550, 593
SduI	GDGCHC	2 cut(s)	309, 1089
SfaNI	GCATC	2 cut(s)	999, 1123
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	4 cut(s)	34, 582, 1017, 1047
SmlI	CTYRAG	2 cut(s)	1235, 1275
SmoI	CTYRAG	2 cut(s)	1235, 1275
Sse9I	AATT	2 cut(s)	159, 168
SspMI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
StyD4I	CCNGG	2 cut(s)	548, 591
StyI	CCWWGG	2 cut(s)	665, 733
TaaI	ACNGT	3 cut(s)	491, 1091, 1156
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	6 cut(s)	396, 519, 645, 687, 918, 1227
TasI	AATT	2 cut(s)	159, 168
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	4 cut(s)	295, 429, 532, 1032
TfiI	GAWTC	2 cut(s)	54, 1070
Tru1I	TTAA	3 cut(s)	186, 936, 1236
Tru9I	TTAA	3 cut(s)	186, 936, 1236
TscAI	CASTG	2 cut(s)	934, 1094
TseFI	GTSAC	3 cut(s)	476, 584, 929
Tsp45I	GTSAC	3 cut(s)	476, 584, 929
TspDTI	ATGAA	3 cut(s)	537, 1031, 1268
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	934, 1094
Vha464I	CTTAAG	1 cut(s)	1235
VneI	GTGCAC	1 cut(s)	1085
VpaK11BI	GGWCC	1 cut(s)	264
XbaI	TCTAGA	2 cut(s)	50, 899
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	687
XspI	CTAG	5 cut(s)	51, 417, 900, 1005, 1314
Zsp2I	ATGCAT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.