FvH4_2g37080

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
27057574 .. 27059196
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37080.t1

Sequence Viewer

Length: 1269 bp
ATGGGAATTACAGCACCATTTCTAGGGGAGGCAGTAGGAATGAGGTCCGGTTATGGCAGTTGTGAATACCGCCCTAGATTTTCAACTACCAACCAGAACCACCGGTCCATATCCAAATTCAGATTACCTCTCCCGCGCAGCTCAAAATCAAACCCTCTCACTTCCAACAATACTAGAAAGAAGAACAATACAAGGAAGAAGAGGAAGAAGAATGAGAATGGGTCGAGGTGCAGCACCTCCGATATTCTGCGGTTGATGGATGGGCTCCAAGTCCCAGTAACATCAACAACTCTATCTGACAATCACATGTACGCTTCTCTCATCAACGATTGTTCCGACTCCGGTGCGGCTCTCCACTTACAGGCCCACCTCACTAGAAAGAGCCCACCACCTCCTCTACATTTGCTCAACCGCCTGCTTCTCCGTCACGTCTGTAACGGCCGTTTGGATAATGCCCACCAGCTGTTTGATGAAATGCCGCTTAAGGACTTCAACTCCTGGGCCACCTTGATAGTTGCTTATGCTCACAATGCCGATTACACGGAGGCCTTGAGGTTGTTCATGAGCATGCTACACCTGCAGGACTGTCATGTTAATATGTCGGAGTTTCCTGCTTGGATCATGGCTTGTGTTCTTGACGCTACCATGGATGTGGGATTAGGGGAGCAGCTCCATGGCTGCTGTCTCAAGTTGGGTCATGCTAATCGTGATATGTTTGTTGCCACCTCCTTGATCAACTTCTACGGCAGATTGAGGTGCCATGAAGCTGCGCAACGCGCCTCCCTTGGGCTCTCACAGCCTAATGCGCTGACATGGACGGCTAGGATGATCAACAACTCTAGAGGAGAGCGGTTTTTTGAAGTGATCAGTGACTTTCAGGACATAGGGAGAGCTGGGATAAGTAAGAACACTTGTATGATCTCTTGTGTCCTCAGGGCGTGTGCTAGGATGCCTGATAGTGGTTTCAGTGGCAGACAAGTTCATGCCAATGCCATCAAACTTGGTGTGGAGTCCCATTCGTTTGTGCACTGCGGGTTAATTGATATGTATGGAAGAAACGGGCTACTTAGAGATGCGAAACTGGTGTTTCAGACATTCAACGATACTACATCTACTGCGTGTTGGAATGCCATGCTTACAAGCTACTTGCGGAACAGGTTACACATCGAAGCCCTTAAGTTTCTCTATGAGATGCAGGCAGATGGGTTGCAGCCTCAGGAATATCTGCTGGATCAAGTGAGGATTGCTTGCGCTAGTAATGGTCTATAA

Protein Analysis

423

Amino Acids

47.28

Weight (kDa)

9.09

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016028)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 585
Acc16I TGCGCA 1 cut(s) 771
Acc36I ACCTGC 1 cut(s) 585
AccB1I GGYRCC 1 cut(s) 756
AccBSI CCGCTC 1 cut(s) 850
AccII CGCG 2 cut(s) 136, 777
AciI CCGC 9 cut(s) 70, 134, 250, 347, 412, 479, 850, 1032, 1150
AclWI GGATC 2 cut(s) 626, 1239
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 23, 361, 786, 959
AflII CTTAAG 2 cut(s) 482, 1175
AflIII ACRYGT 1 cut(s) 306
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 4 cut(s) 84, 493, 860, 1099
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 1 cut(s) 497
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 6 cut(s) 141, 463, 670, 767, 893, 1143
AluI AGCT 6 cut(s) 141, 463, 670, 767, 893, 1143
Alw21I GWGCWC 1 cut(s) 1029
Alw26I GTCTC 1 cut(s) 689
Alw44I GTGCAC 1 cut(s) 1025
AlwI GGATC 2 cut(s) 626, 1239
AoxI GGCC 4 cut(s) 363, 439, 501, 546
ApaLI GTGCAC 1 cut(s) 1025
ApeKI GCWGC 6 cut(s) 138, 231, 667, 678, 767, 1210
ApoI RAATTY 1 cut(s) 116
AsiGI ACCGGT 1 cut(s) 102
AspLEI GCGC 5 cut(s) 138, 772, 779, 808, 1253
AspS9I GGNCC 4 cut(s) 45, 105, 364, 501
AvaII GGWCC 2 cut(s) 45, 105
AxyI CCTNAGG 2 cut(s) 932, 1215
BaeGI GKGCMC 1 cut(s) 1029
BanI GGYRCC 1 cut(s) 756
BanII GRGCYC 3 cut(s) 267, 386, 792
Bbv12I GWGCWC 1 cut(s) 1029
BbvI GCAGC 6 cut(s) 150, 243, 665, 679, 754, 1222
BccI CCATC 4 cut(s) 250, 254, 1001, 1196
BceAI ACGGC 4 cut(s) 426, 454, 760, 834
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 1 cut(s) 499
BclI TGATCA 3 cut(s) 732, 828, 864
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 8 cut(s) 23, 75, 174, 375, 822, 840, 945, 1254
BfmI CTRYAG 1 cut(s) 578
BfrI CTTAAG 2 cut(s) 482, 1175
BfuAI ACCTGC 1 cut(s) 585
BisI GCNGC 8 cut(s) 139, 232, 348, 479, 668, 679, 768, 1211
BlsI GCNGC 8 cut(s) 140, 233, 349, 480, 669, 680, 769, 1212
Bme1390I CCNGG 1 cut(s) 499
Bme18I GGWCC 2 cut(s) 45, 105
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 4 cut(s) 45, 105, 364, 501
BmiI GGNNCC 2 cut(s) 266, 758
BmrFI CCNGG 1 cut(s) 499
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 3 cut(s) 939, 1063, 1182
BmuI ACTGGG 1 cut(s) 269
BpuEI CTTGAG 2 cut(s) 571, 671
BsaJI CCNNGG 4 cut(s) 498, 645, 673, 784
BsaWI WCCGGW 3 cut(s) 47, 102, 341
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 361, 786, 959
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 275, 1086
Bse21I CCTNAGG 2 cut(s) 932, 1215
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 4 cut(s) 498, 645, 673, 784
BseGI GGATG 4 cut(s) 265, 655, 831, 954
BseLI CCNNNNNNNGG 4 cut(s) 23, 361, 786, 959
BseMII CTCAG 2 cut(s) 946, 1229
BseNI ACTGG 2 cut(s) 275, 1086
BseRI GAGGAG 2 cut(s) 384, 858
BseSI GKGCMC 1 cut(s) 1029
BseX3I CGGCCG 1 cut(s) 439
BseXI GCAGC 6 cut(s) 150, 243, 665, 679, 754, 1222
BseYI CCCAGC 1 cut(s) 893
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 2 cut(s) 136, 777
Bsh1285I CGRYCG 1 cut(s) 442
BshFI GGCC 4 cut(s) 365, 441, 503, 548
BshNI GGYRCC 1 cut(s) 756
BshTI ACCGGT 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 1029
BsiSI CCGG 3 cut(s) 48, 103, 342
BslFI GGGAC 2 cut(s) 257, 997
BslI CCNNNNNNNGG 4 cut(s) 23, 361, 786, 959
BsmAI GTCTC 1 cut(s) 689
BsmFI GGGAC 2 cut(s) 257, 997
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 4 cut(s) 365, 441, 503, 548
Bsp1286I GDGCHC 4 cut(s) 267, 386, 792, 1029
Bsp143I GATC 6 cut(s) 618, 732, 828, 864, 918, 1231
Bsp19I CCATGG 2 cut(s) 645, 673
BspACI CCGC 9 cut(s) 70, 134, 250, 347, 412, 479, 850, 1032, 1150
BspANI GGCC 4 cut(s) 365, 441, 503, 548
BspCNI CTCAG 2 cut(s) 945, 1228
BspFNI CGCG 2 cut(s) 136, 777
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 266, 758
BspMAI CTGCAG 1 cut(s) 582
BspMI ACCTGC 1 cut(s) 585
BspPI GGATC 2 cut(s) 626, 1239
BspT107I GGYRCC 1 cut(s) 756
BspTI CTTAAG 2 cut(s) 482, 1175
BsrBI CCGCTC 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 2 cut(s) 275, 1086
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 4 cut(s) 498, 645, 673, 784
BssMI GATC 6 cut(s) 618, 732, 828, 864, 918, 1231
BssT1I CCWWGG 3 cut(s) 645, 673, 784
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 1 cut(s) 194
BstAFI CTTAAG 2 cut(s) 482, 1175
BstC8I GCNNGC 4 cut(s) 416, 569, 1197, 1249
BstDEI CTNAG 3 cut(s) 932, 1067, 1215
BstDSI CCRYGG 2 cut(s) 645, 673
BstF5I GGATG 4 cut(s) 265, 655, 831, 954
BstFNI CGCG 2 cut(s) 136, 777
BstHHI GCGC 5 cut(s) 138, 772, 779, 808, 1253
BstKTI GATC 6 cut(s) 621, 735, 831, 867, 921, 1234
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 6 cut(s) 618, 732, 828, 864, 918, 1231
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 5 cut(s) 530, 577, 776, 796, 805
BstNI CCWGG 1 cut(s) 499
BstNSI RCATGY 2 cut(s) 310, 571
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 578
BstSLI GKGCMC 1 cut(s) 1029
BstUI CGCG 2 cut(s) 136, 777
BstV1I GCAGC 6 cut(s) 150, 243, 665, 679, 754, 1222
BstXI CCANNNNNNTGG 1 cut(s) 652
BstZI CGGCCG 1 cut(s) 439
Bsu36I CCTNAGG 2 cut(s) 932, 1215
BsuRI GGCC 4 cut(s) 365, 441, 503, 548
BtgI CCRYGG 2 cut(s) 645, 673
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 4 cut(s) 265, 655, 831, 954
BtsI GCAGTG 1 cut(s) 1027
BtsIMutI CAGTG 3 cut(s) 874, 973, 1027
BveI ACCTGC 1 cut(s) 585
Cac8I GCNNGC 4 cut(s) 416, 569, 1197, 1249
CciI TCATGA 1 cut(s) 561
CfoI GCGC 5 cut(s) 138, 772, 779, 808, 1253
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 4 cut(s) 45, 105, 364, 501
CseI GACGC 1 cut(s) 647
Csp6I GTAC 1 cut(s) 310
CspAI ACCGGT 1 cut(s) 102
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 932, 1067, 1215
DpnI GATC 6 cut(s) 620, 734, 830, 866, 920, 1233
DpnII GATC 6 cut(s) 618, 732, 828, 864, 918, 1231
EaeI YGGCCR 1 cut(s) 439
EagI CGGCCG 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EclXI CGGCCG 1 cut(s) 439
Eco130I CCWWGG 3 cut(s) 645, 673, 784
Eco147I AGGCCT 1 cut(s) 548
Eco24I GRGCYC 3 cut(s) 267, 386, 792
Eco47I GGWCC 2 cut(s) 45, 105
Eco52I CGGCCG 1 cut(s) 439
Eco81I CCTNAGG 2 cut(s) 932, 1215
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 3 cut(s) 645, 673, 784
EcoT38I GRGCYC 3 cut(s) 267, 386, 792
ErhI CCWWGG 3 cut(s) 645, 673, 784
FaqI GGGAC 2 cut(s) 257, 997
FauI CCCGC 2 cut(s) 141, 1025
FbaI TGATCA 3 cut(s) 732, 828, 864
Fnu4HI GCNGC 8 cut(s) 139, 232, 348, 479, 668, 679, 768, 1211
FokI GGATG 4 cut(s) 272, 662, 838, 961
FriOI GRGCYC 3 cut(s) 267, 386, 792
Fsp4HI GCNGC 8 cut(s) 139, 232, 348, 479, 668, 679, 768, 1211
FspBI CTAG 8 cut(s) 23, 75, 174, 375, 822, 840, 945, 1254
FspI TGCGCA 1 cut(s) 771
GlaI GCGC 5 cut(s) 137, 771, 778, 807, 1252
GluI GCNGC 8 cut(s) 139, 232, 348, 479, 668, 679, 768, 1211
GsaI CCCAGC 1 cut(s) 897
HaeIII GGCC 4 cut(s) 365, 441, 503, 548
HapII CCGG 3 cut(s) 48, 103, 342
HgaI GACGC 1 cut(s) 647
HhaI GCGC 5 cut(s) 138, 772, 779, 808, 1253
Hin6I GCGC 5 cut(s) 136, 770, 777, 806, 1251
HinP1I GCGC 5 cut(s) 136, 770, 777, 806, 1251
HinfI GANTC 2 cut(s) 338, 1010
HpaII CCGG 3 cut(s) 48, 103, 342
Hpy166II GTNNAC 1 cut(s) 1027
Hpy188I TCNGA 6 cut(s) 122, 241, 298, 337, 604, 1092
Hpy188III TCNNGA 6 cut(s) 562, 635, 707, 840, 878, 1217
Hpy8I GTNNAC 1 cut(s) 1027
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 5 cut(s) 231, 580, 1027, 1195, 1210
HpyF10VI GCNNNNNNNGC 5 cut(s) 530, 577, 776, 796, 805
HpyF3I CTNAG 3 cut(s) 932, 1067, 1215
HpySE526I ACGT 1 cut(s) 429
HspAI GCGC 5 cut(s) 136, 770, 777, 806, 1251
Ksp22I TGATCA 3 cut(s) 732, 828, 864
Kzo9I GATC 6 cut(s) 618, 732, 828, 864, 918, 1231
LmnI GCTCC 3 cut(s) 270, 664, 675
Lsp1109I GCAGC 6 cut(s) 150, 243, 665, 679, 754, 1222
LweI GCATC 3 cut(s) 939, 1063, 1182
MaeI CTAG 8 cut(s) 23, 75, 174, 375, 822, 840, 945, 1254
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 5 cut(s) 277, 425, 434, 869, 1158
MalI GATC 6 cut(s) 620, 734, 830, 866, 920, 1233
MbiI CCGCTC 1 cut(s) 850
MboI GATC 6 cut(s) 618, 732, 828, 864, 918, 1231
MboII GAAGA 6 cut(s) 193, 208, 211, 217, 220, 1065
MhlI GDGCHC 4 cut(s) 267, 386, 792, 1029
MluCI AATT 3 cut(s) 6, 116, 1038
MlyI GAGTC 2 cut(s) 332, 1019
MmeI TCCRAC 4 cut(s) 189, 360, 582, 1103
MseI TTAA 4 cut(s) 483, 594, 1037, 1176
MslI CAYNNNNRTG 4 cut(s) 566, 650, 914, 987
MspA1I CMGCKG 1 cut(s) 463
MspCI CTTAAG 2 cut(s) 482, 1175
MspI CCGG 3 cut(s) 48, 103, 342
MspR9I CCNGG 1 cut(s) 499
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 2 cut(s) 136, 777
MwoI GCNNNNNNNGC 5 cut(s) 530, 577, 776, 796, 805
NcoI CCATGG 2 cut(s) 645, 673
NdeII GATC 6 cut(s) 618, 732, 828, 864, 918, 1231
NlaIV GGNNCC 2 cut(s) 266, 758
NmuCI GTSAC 2 cut(s) 425, 869
NsbI TGCGCA 1 cut(s) 771
NspI RCATGY 2 cut(s) 310, 571
PaeI GCATGC 1 cut(s) 571
PagI TCATGA 1 cut(s) 561
PaqCI CACCTGC 1 cut(s) 585
PceI AGGCCT 1 cut(s) 548
PciI ACATGT 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 1132
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 8 cut(s) 140, 233, 349, 480, 669, 680, 769, 1212
PleI GAGTC 2 cut(s) 332, 1018
PpsI GAGTC 2 cut(s) 332, 1018
PscI ACATGT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 2 cut(s) 266, 758
PspPI GGNCC 4 cut(s) 45, 105, 364, 501
PstI CTGCAG 1 cut(s) 582
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 4 cut(s) 566, 650, 914, 987
SaqAI TTAA 4 cut(s) 483, 594, 1037, 1176
SatI GCNGC 8 cut(s) 139, 232, 348, 479, 668, 679, 768, 1211
Sau3AI GATC 6 cut(s) 618, 732, 828, 864, 918, 1231
Sau96I GGNCC 4 cut(s) 45, 105, 364, 501
SbfI CCTGCAGG 1 cut(s) 582
SchI GAGTC 2 cut(s) 332, 1019
ScrFI CCNGG 1 cut(s) 499
SdaI CCTGCAGG 1 cut(s) 582
SduI GDGCHC 4 cut(s) 267, 386, 792, 1029
SfaNI GCATC 3 cut(s) 939, 1063, 1182
SfcI CTRYAG 1 cut(s) 578
SinI GGWCC 2 cut(s) 45, 105
SmiMI CAYNNNNRTG 4 cut(s) 566, 650, 914, 987
SmlI CTYRAG 4 cut(s) 482, 550, 686, 1175
SmoI CTYRAG 4 cut(s) 482, 550, 686, 1175
SphI GCATGC 1 cut(s) 571
Sse8387I CCTGCAGG 1 cut(s) 582
Sse9I AATT 3 cut(s) 6, 116, 1038
SseBI AGGCCT 1 cut(s) 548
SsiI CCGC 9 cut(s) 70, 134, 250, 347, 412, 479, 850, 1032, 1150
SspMI CTAG 8 cut(s) 23, 75, 174, 375, 822, 840, 945, 1254
StuI AGGCCT 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 3 cut(s) 645, 673, 784
TaaI ACNGT 1 cut(s) 587
TaiI ACGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 224, 1167
TasI AATT 3 cut(s) 6, 116, 1038
TauI GCSGC 2 cut(s) 350, 481
Tru1I TTAA 4 cut(s) 483, 594, 1037, 1176
Tru9I TTAA 4 cut(s) 483, 594, 1037, 1176
TscAI CASTG 3 cut(s) 874, 973, 1034
TseFI GTSAC 2 cut(s) 425, 869
TseI GCWGC 6 cut(s) 138, 231, 667, 678, 767, 1210
Tsp45I GTSAC 2 cut(s) 425, 869
TspDTI ATGAA 4 cut(s) 486, 550, 777, 971
TspGWI ACGGA 2 cut(s) 413, 557
TspRI CASTG 3 cut(s) 874, 973, 1034
Vha464I CTTAAG 2 cut(s) 482, 1175
VneI GTGCAC 1 cut(s) 1025
VpaK11BI GGWCC 2 cut(s) 45, 105
XapI RAATTY 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 839
XceI RCATGY 2 cut(s) 310, 571
XspI CTAG 8 cut(s) 23, 75, 174, 375, 822, 840, 945, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.