Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8157394.1

Orthogroup ID

OG0016028

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 658

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8157394.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 658 bp

tccaattccaacaccgccggttaaaccccaccggaataggaataataatgatgatattaggaagaggaagtacaacaagaagaagaagaatggatgtgggtccagctgcagcacctccgatattctgcggctgatggatgggctccgagtccccgtggcagcagcagccccagctgacaatggcatgtatgcttctctcatcaacgattgctcggactccggcgcagctctcgacttacaggcccaccttactaggaagggccgccgtaacccaccaccgcctctacacttgctcaaccgcctgcttgtccgtcacgtcgctaacggtcgtttagacaatgctcaccacctgttcgatgaaatgccgcataaggacttcaactcctgggccaccttgatagttgcttatgctcacaatggtgactacccggaagctttgagattgtttctgaccatgctataccagcaggaatatcatgtcgatatgtttgagtttcctccatggatcatggcttgcgttgtcgacgcttgtgcctgcacgatggatatgagattaggggagcaactccatggctgctgcctaaagttgggtcatggtaatcatgatatgtttgttgccacctccttgatcaacttttacggcagattgaggtgccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

219

Amino Acids

24.71

Weight (kDa)

8.77

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31790
fragaria_vesca	FvH4_2g37080 FvH4_2g37240
rosa_chinensis	RchiOBHm_Chr6g0304481
rosa_laevigata	RLG00000010973
rosa_multiflora	Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii	Rroxscaffold_7G00163710
rosa_rugosa	Rorug06G0332100
rosa_samantha	Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana	Rw6G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	652
AccI	GTMKAC	1 cut(s)	523
AciI	CCGC	6 cut(s)	15, 128, 263, 279, 299, 366
AclWI	GGATC	1 cut(s)	513
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	1 cut(s)	380
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	384
AleI	CACNNNNGTG	1 cut(s)	418
AluBI	AGCT	4 cut(s)	106, 174, 228, 435
AluI	AGCT	4 cut(s)	106, 174, 228, 435
AlwI	GGATC	1 cut(s)	513
AoxI	GGCC	3 cut(s)	241, 260, 388
ApeKI	GCWGC	8 cut(s)	106, 109, 159, 162, 165, 225, 574, 577
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	4 cut(s)	100, 242, 260, 388
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	2 cut(s)	336, 432
AvaII	GGWCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BbvI	GCAGC	8 cut(s)	93, 121, 171, 174, 177, 237, 561, 564
BccI	CCATC	3 cut(s)	128, 132, 536
BceAI	ACGGC	2 cut(s)	250, 656
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	429
BfaI	CTAG	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	386, 429
Bme18I	GGWCC	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	100, 242, 260, 388
BmiI	GGNNCC	3 cut(s)	101, 144, 654
BmrFI	CCNGG	2 cut(s)	386, 429
BpuMI	CCSGG	1 cut(s)	429
BsaJI	CCNNGG	4 cut(s)	154, 385, 501, 569
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse118I	RCCGGY	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	4 cut(s)	154, 385, 501, 569
BseGI	GGATG	2 cut(s)	99, 143
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseXI	GCAGC	8 cut(s)	93, 121, 171, 174, 177, 237, 561, 564
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	3 cut(s)	243, 262, 390
BshNI	GGYRCC	1 cut(s)	652
BsiEI	CGRYCG	1 cut(s)	329
BsiSI	CCGG	4 cut(s)	18, 32, 220, 429
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	3 cut(s)	243, 262, 390
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	505, 628
Bsp19I	CCATGG	2 cut(s)	501, 569
BspACI	CCGC	6 cut(s)	15, 128, 263, 279, 299, 366
BspANI	GGCC	3 cut(s)	243, 262, 390
BspHI	TCATGA	1 cut(s)	602
BspLI	GGNNCC	3 cut(s)	101, 144, 654
BspMAI	CTGCAG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	652
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	4 cut(s)	154, 385, 501, 569
BssMI	GATC	2 cut(s)	505, 628
BssT1I	CCWWGG	2 cut(s)	501, 569
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	303, 515, 536
BstDSI	CCRYGG	3 cut(s)	154, 501, 569
BstF5I	GGATG	2 cut(s)	99, 143
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	508, 631
BstMBI	GATC	2 cut(s)	505, 628
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 171, 464
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	384, 427
BstSFI	CTRYAG	1 cut(s)	107
BstV1I	GCAGC	8 cut(s)	93, 121, 171, 174, 177, 237, 561, 564
BsuRI	GGCC	3 cut(s)	243, 262, 390
BtgI	CCRYGG	3 cut(s)	154, 501, 569
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	99, 143
Cac8I	GCNNGC	3 cut(s)	303, 515, 536
CciI	TCATGA	1 cut(s)	602
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	4 cut(s)	100, 242, 260, 388
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	8 cut(s)	185, 455, 477, 502, 509, 570, 594, 603
CviQI	GTAC	1 cut(s)	71
DpnI	GATC	2 cut(s)	507, 630
DpnII	GATC	2 cut(s)	505, 628
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	501, 569
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	2 cut(s)	501, 569
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	501, 569
FaeI	CATG	8 cut(s)	188, 458, 480, 505, 512, 573, 597, 606
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	8 cut(s)	184, 454, 476, 501, 508, 569, 593, 602
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	523
FokI	GGATG	2 cut(s)	106, 150
FriOI	GRGCYC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	253
GlaI	GCGC	1 cut(s)	224
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	243, 262, 390
HapII	CCGG	4 cut(s)	18, 32, 220, 429
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	8 cut(s)	188, 458, 480, 505, 512, 573, 597, 606
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	524
HindII	GTYRAC	1 cut(s)	524
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	2 cut(s)	148, 216
HpaII	CCGG	4 cut(s)	18, 32, 220, 429
HphI	GGTGA	2 cut(s)	336, 432
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	4 cut(s)	119, 147, 215, 451
Hpy188III	TCNNGA	2 cut(s)	231, 603
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	2 cut(s)	321, 528
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	109, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 171, 464
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	8 cut(s)	188, 458, 480, 505, 512, 573, 597, 606
HspAI	GCGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	505, 628
LmnI	GCTCC	2 cut(s)	148, 560
Lsp1109I	GCAGC	8 cut(s)	93, 121, 171, 174, 177, 237, 561, 564
MaeI	CTAG	1 cut(s)	253
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	3 cut(s)	267, 312, 420
MalI	GATC	2 cut(s)	507, 630
MboI	GATC	2 cut(s)	505, 628
MboII	GAAGA	4 cut(s)	74, 92, 95, 98
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	157, 210
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	58, 125, 292, 508, 632, 643
MseI	TTAA	1 cut(s)	22
MslI	CAYNNNNRTG	1 cut(s)	418
MspA1I	CMGCKG	2 cut(s)	106, 174
MspI	CCGG	4 cut(s)	18, 32, 220, 429
MspR9I	CCNGG	2 cut(s)	386, 429
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	165, 171, 464
NciI	CCSGG	1 cut(s)	429
NcoI	CCATGG	2 cut(s)	501, 569
NdeII	GATC	2 cut(s)	505, 628
NlaIII	CATG	8 cut(s)	188, 458, 480, 505, 512, 573, 597, 606
NlaIV	GGNNCC	3 cut(s)	101, 144, 654
NmuCI	GTSAC	2 cut(s)	312, 420
NspI	RCATGY	1 cut(s)	188
OliI	CACNNNNGTG	1 cut(s)	418
PagI	TCATGA	1 cut(s)	602
PleI	GAGTC	2 cut(s)	156, 210
PpsI	GAGTC	2 cut(s)	156, 210
Psp6I	CCWGG	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	101, 144, 654
PspPI	GGNCC	4 cut(s)	100, 242, 260, 388
PstI	CTGCAG	1 cut(s)	111
PvuII	CAGCTG	2 cut(s)	106, 174
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	505, 628
Sau96I	GGNCC	4 cut(s)	100, 242, 260, 388
SchI	GAGTC	2 cut(s)	157, 210
ScrFI	CCNGG	2 cut(s)	386, 429
SduI	GDGCHC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	418
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	6 cut(s)	15, 128, 263, 279, 299, 366
SspMI	CTAG	1 cut(s)	253
StyD4I	CCNGG	2 cut(s)	384, 427
StyI	CCWWGG	2 cut(s)	501, 569
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	4 cut(s)	232, 355, 481, 523
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	70
TauI	GCSGC	3 cut(s)	131, 265, 368
Tru1I	TTAA	1 cut(s)	22
Tru9I	TTAA	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	312, 420
TseI	GCWGC	8 cut(s)	106, 109, 159, 162, 165, 225, 574, 577
Tsp45I	GTSAC	2 cut(s)	312, 420
TspDTI	ATGAA	1 cut(s)	373
TspGWI	ACGGA	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	523
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.