Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016028

Physical Location & Seq

Genomic Coordinates Reverse (-)

5887608 .. 5888924

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGGAACTGCAGCACCTCAACAGTACACATACCAGTGGCAATGCCACTCTAGATTCTCAGCTACCAACCACAACTACCCGCCCATATCCAAAGTCAGGTTACCCCTCCCGCGCAGCTCAAAATCAAACACTCTTGCCTCCAACAATACTACAATTCATCCAATTCCAACACCGCCGGTTAAACCCCACCGGAATAGGAATAATAATAATAATAATGTTAGGAAGGGGAAGAACAACAAGAAGAATGGATGTGGGTCCAGCTGCAGCACCTCCGATATTCTGCGGCTGATGGATGGGCTCCGAGTCCCCCTAGCAACAGCCGCAGCTGACACTGGTATGTATGCTTCTCTCATCAACGATTGCTCGGACTCCGGCGCAGCTCTCGACTTACAGGCCCACCTTACTAGGAAGGGCCGCCGTAACCCACCACCGCCTCTACACTTGCTCAACCGCCTGCTTCTCCGTCATGTTACTAACGGTCGTTTAGACAATGCTCACCACCTGTTCGAAGAAATGCCGCTCAAGGACTTCAACTCCTGGGCCACCTTGATAGTTGCTTATGCTCACAATGGTGACTACCCGGAAGCTTTGAGACTGTTTCTGACCATGCTATACCAGCAGGAATATAATGTTGATATGTGTGGTTTTCCTCCATGGATCATGGCTTGCGTTGTCGACGCTTGTGCCTGCACGATGGATATGAGATTAGGGGAGCAACTCCATGGCTGCTGCCTAAAGGTGGGTCATGGTAATCATGACATGTTTGTTGCCACCTCCTTGATCAACTTTTACGGCAGATTGAGGTGCCACGAAGCTGCACACCGCGCTTCTATTGGACTCTCGAAGCCTAATGCCCTCACCTGGACGGCTATAATGATCAATAACTCTAGAGGAGAGAGGTTTTTCGACGTGATCAGTGACTTTAAGGAAATAGGGAGGGCTGGGATAAAGAAGAACACTTGTATCATCTCTTGTGTCCTCAGGGCGTGTGCTAGGATGCATGATGATGGCTTCAGCGGCAGACAAGTTCATGCCAATGCCATCAAACTTGGAGTGGAATCCCATTCTTTCGTGCACTGTGGGTTGGTGGATATGTATGGAAGAAACGGGCTACTTAGAGATGCGAAACTGGTGTTTCAGACGGTCAACAATATAACATCTACTGCGTGTTGGAATGCCATGCTTACCAGTTACTTGCGGAATGGGTTACACATCGAAGCCCTTAAGTTTCTCTATCAGATGAAGGCAGGTGGGTTGCAGCCTCAAGAATATCTGCTGGATCAAGTGAGGATTGCTTGCGCTAGTAATGGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

438

Amino Acids

48.75

Weight (kDa)

9.22

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31790
fragaria_vesca	FvH4_2g37080 FvH4_2g37240
rosa_chinensis	RchiOBHm_Chr6g0304481
rosa_laevigata	RLG00000010973
rosa_multiflora	Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii	Rroxscaffold_7G00163710
rosa_rugosa	Rorug06G0332100
rosa_samantha	Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana	Rw6G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1238
Acc36I	ACCTGC	1 cut(s)	1238
AccB1I	GGYRCC	1 cut(s)	804
AccBSI	CCGCTC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	2 cut(s)	112, 825
AclWI	GGATC	2 cut(s)	665, 1287
AcuI	CTGAAG	1 cut(s)	997
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	96, 739, 861
AflII	CTTAAG	1 cut(s)	1223
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	1 cut(s)	532
AjiI	CACGTC	1 cut(s)	910
AjnI	CCWGG	2 cut(s)	536, 860
AleI	CACNNNNGTG	1 cut(s)	570
AluBI	AGCT	7 cut(s)	62, 117, 261, 326, 380, 587, 815
AluI	AGCT	7 cut(s)	62, 117, 261, 326, 380, 587, 815
Alw21I	GWGCWC	1 cut(s)	1077
Alw26I	GTCTC	1 cut(s)	586
Alw44I	GTGCAC	1 cut(s)	1073
AlwI	GGATC	2 cut(s)	665, 1287
AoxI	GGCC	3 cut(s)	393, 412, 540
ApaLI	GTGCAC	1 cut(s)	1073
AspLEI	GCGC	4 cut(s)	114, 377, 827, 1301
AspS9I	GGNCC	4 cut(s)	255, 394, 412, 540
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	3 cut(s)	488, 584, 850
AsuII	TTCGAA	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	255
AxyI	CCTNAGG	1 cut(s)	980
BaeGI	GKGCMC	1 cut(s)	1077
BaeI	ACNNNNGTAYC	2 cut(s)	946, 979
BanI	GGYRCC	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	328, 360
Bbv12I	GWGCWC	1 cut(s)	1077
BccI	CCATC	5 cut(s)	283, 287, 688, 1001, 1049
BceAI	ACGGC	3 cut(s)	402, 808, 882
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	2 cut(s)	538, 862
BclI	TGATCA	3 cut(s)	780, 876, 912
BcnI	CCSGG	1 cut(s)	581
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	6 cut(s)	51, 311, 405, 888, 993, 1302
BfmI	CTRYAG	2 cut(s)	9, 262
BfrI	CTTAAG	1 cut(s)	1223
BfuAI	ACCTGC	1 cut(s)	1238
Bme1390I	CCNGG	3 cut(s)	538, 581, 862
Bme18I	GGWCC	1 cut(s)	255
BmgBI	CACGTC	1 cut(s)	910
BmgT120I	GGNCC	4 cut(s)	255, 394, 412, 540
BmiI	GGNNCC	3 cut(s)	256, 299, 806
BmrFI	CCNGG	3 cut(s)	538, 581, 862
BmsI	GCATC	2 cut(s)	987, 1111
Bpu14I	TTCGAA	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	506, 1248
BpuMI	CCSGG	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	537, 653, 721
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 739, 861
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	4 cut(s)	34, 337, 1134, 1188
Bse21I	CCTNAGG	1 cut(s)	980
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	538, 862
BseDI	CCNNGG	3 cut(s)	537, 653, 721
BseGI	GGATG	4 cut(s)	157, 254, 298, 1002
BseLI	CCNNNNNNNGG	3 cut(s)	96, 739, 861
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	72, 994
BseNI	ACTGG	4 cut(s)	34, 337, 1134, 1188
BseRI	GAGGAG	1 cut(s)	906
BseSI	GKGCMC	1 cut(s)	1077
BseYI	CCCAGC	1 cut(s)	941
BsgI	GTGCAG	2 cut(s)	673, 801
Bsh1236I	CGCG	2 cut(s)	112, 825
Bsh1285I	CGRYCG	1 cut(s)	481
BshFI	GGCC	3 cut(s)	395, 414, 542
BshNI	GGYRCC	1 cut(s)	804
BsiEI	CGRYCG	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	1077
BsiSI	CCGG	4 cut(s)	176, 190, 372, 581
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	3 cut(s)	96, 739, 861
BsmAI	GTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	1180
BsnI	GGCC	3 cut(s)	395, 414, 542
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	300, 1077
Bsp143I	GATC	5 cut(s)	657, 780, 876, 912, 1279
Bsp19I	CCATGG	2 cut(s)	653, 721
BspANI	GGCC	3 cut(s)	395, 414, 542
BspCNI	CTCAG	2 cut(s)	71, 993
BspFNI	CGCG	2 cut(s)	112, 825
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	3 cut(s)	256, 299, 806
BspMAI	CTGCAG	2 cut(s)	13, 266
BspMI	ACCTGC	1 cut(s)	1238
BspPI	GGATC	2 cut(s)	665, 1287
BspT104I	TTCGAA	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	804
BspTI	CTTAAG	1 cut(s)	1223
BsrBI	CCGCTC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	4 cut(s)	34, 337, 1134, 1188
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	537, 653, 721
BssMI	GATC	5 cut(s)	657, 780, 876, 912, 1279
BssT1I	CCWWGG	2 cut(s)	653, 721
Bst2UI	CCWGG	2 cut(s)	538, 862
Bst4CI	ACNGT	5 cut(s)	24, 479, 597, 1079, 1144
BstAFI	CTTAAG	1 cut(s)	1223
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	4 cut(s)	455, 667, 688, 1297
BstDEI	CTNAG	3 cut(s)	58, 980, 1115
BstDSI	CCRYGG	2 cut(s)	653, 721
BstEII	GGTNACC	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	157, 254, 298, 1002
BstFNI	CGCG	2 cut(s)	112, 825
BstHHI	GCGC	4 cut(s)	114, 377, 827, 1301
BstKTI	GATC	5 cut(s)	660, 783, 879, 915, 1282
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	5 cut(s)	657, 780, 876, 912, 1279
BstMCI	CGRYCG	1 cut(s)	481
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 616, 824, 1017
BstNI	CCWGG	2 cut(s)	538, 862
BstNSI	RCATGY	1 cut(s)	763
BstPI	GGTNACC	1 cut(s)	99
BstSCI	CCNGG	3 cut(s)	536, 579, 860
BstSFI	CTRYAG	2 cut(s)	9, 262
BstSLI	GKGCMC	1 cut(s)	1077
BstUI	CGCG	2 cut(s)	112, 825
Bsu36I	CCTNAGG	1 cut(s)	980
BsuRI	GGCC	3 cut(s)	395, 414, 542
BtgI	CCRYGG	2 cut(s)	653, 721
BtrI	CACGTC	1 cut(s)	910
BtsCI	GGATG	4 cut(s)	157, 254, 298, 1002
BtsIMutI	CAGTG	4 cut(s)	41, 330, 922, 1075
BveI	ACCTGC	1 cut(s)	1238
Cac8I	GCNNGC	4 cut(s)	455, 667, 688, 1297
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	4 cut(s)	114, 377, 827, 1301
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	4 cut(s)	255, 394, 412, 540
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	25
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	58, 980, 1115
DpnI	GATC	5 cut(s)	659, 782, 878, 914, 1281
DpnII	GATC	5 cut(s)	657, 780, 876, 912, 1279
Eco130I	CCWWGG	2 cut(s)	653, 721
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	997
Eco81I	CCTNAGG	1 cut(s)	980
Eco91I	GGTNACC	1 cut(s)	99
EcoO65I	GGTNACC	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	536, 860
EcoT14I	CCWWGG	2 cut(s)	653, 721
EcoT22I	ATGCAT	1 cut(s)	1002
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	2 cut(s)	653, 721
FaqI	GGGAC	1 cut(s)	290
FauI	CCCGC	2 cut(s)	87, 117
FbaI	TGATCA	3 cut(s)	780, 876, 912
FblI	GTMKAC	1 cut(s)	675
FokI	GGATG	4 cut(s)	144, 261, 305, 1009
FriOI	GRGCYC	1 cut(s)	300
FspBI	CTAG	6 cut(s)	51, 311, 405, 888, 993, 1302
GlaI	GCGC	4 cut(s)	113, 376, 826, 1300
GsaI	CCCAGC	1 cut(s)	945
HaeIII	GGCC	3 cut(s)	395, 414, 542
HapII	CCGG	4 cut(s)	176, 190, 372, 581
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	4 cut(s)	114, 377, 827, 1301
Hin6I	GCGC	4 cut(s)	112, 375, 825, 1299
HinP1I	GCGC	4 cut(s)	112, 375, 825, 1299
HincII	GTYRAC	2 cut(s)	676, 1147
HindII	GTYRAC	2 cut(s)	676, 1147
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	5 cut(s)	54, 303, 368, 837, 1058
HpaII	CCGG	4 cut(s)	176, 190, 372, 581
HphI	GGTGA	3 cut(s)	488, 584, 850
Hpy166II	GTNNAC	4 cut(s)	27, 676, 1075, 1147
Hpy188I	TCNGA	6 cut(s)	274, 302, 367, 603, 1140, 1239
Hpy188III	TCNNGA	6 cut(s)	51, 383, 755, 841, 888, 1265
Hpy8I	GTNNAC	4 cut(s)	27, 676, 1075, 1147
Hpy99I	CGWCG	2 cut(s)	680, 911
HpyAV	CCTTC	3 cut(s)	217, 403, 1237
HpyCH4III	ACNGT	5 cut(s)	24, 479, 597, 1079, 1144
HpyCH4IV	ACGT	1 cut(s)	909
HpyCH4V	TGCA	7 cut(s)	11, 264, 690, 818, 1000, 1075, 1258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 616, 824, 1017
HpyF3I	CTNAG	3 cut(s)	58, 980, 1115
HpySE526I	ACGT	1 cut(s)	909
HspAI	GCGC	4 cut(s)	112, 375, 825, 1299
Ksp22I	TGATCA	3 cut(s)	780, 876, 912
Kzo9I	GATC	5 cut(s)	657, 780, 876, 912, 1279
LmnI	GCTCC	2 cut(s)	303, 712
LweI	GCATC	2 cut(s)	987, 1111
MaeI	CTAG	6 cut(s)	51, 311, 405, 888, 993, 1302
MaeII	ACGT	1 cut(s)	909
MaeIII	GTNAC	7 cut(s)	99, 419, 469, 572, 917, 1190, 1206
MalI	GATC	5 cut(s)	659, 782, 878, 914, 1281
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	5 cut(s)	657, 780, 876, 912, 1279
MboII	GAAGA	5 cut(s)	241, 253, 521, 964, 1113
MhlI	GDGCHC	2 cut(s)	300, 1077
MluCI	AATT	2 cut(s)	153, 162
MlyI	GAGTC	3 cut(s)	312, 362, 831
MmeI	TCCRAC	3 cut(s)	165, 191, 1151
Mph1103I	ATGCAT	1 cut(s)	1002
MseI	TTAA	3 cut(s)	180, 924, 1224
MslI	CAYNNNNRTG	5 cut(s)	34, 335, 570, 1005, 1035
MspA1I	CMGCKG	3 cut(s)	261, 326, 1017
MspCI	CTTAAG	1 cut(s)	1223
MspI	CCGG	4 cut(s)	176, 190, 372, 581
MspR9I	CCNGG	3 cut(s)	538, 581, 862
Mva1269I	GAATGC	1 cut(s)	1180
MvaI	CCWGG	2 cut(s)	538, 862
MvnI	CGCG	2 cut(s)	112, 825
MwoI	GCNNNNNNNGC	4 cut(s)	320, 616, 824, 1017
NciI	CCSGG	1 cut(s)	581
NcoI	CCATGG	2 cut(s)	653, 721
NdeII	GATC	5 cut(s)	657, 780, 876, 912, 1279
NlaIV	GGNNCC	3 cut(s)	256, 299, 806
NmuCI	GTSAC	2 cut(s)	572, 917
NsiI	ATGCAT	1 cut(s)	1002
NspI	RCATGY	1 cut(s)	763
NspV	TTCGAA	1 cut(s)	507
OliI	CACNNNNGTG	1 cut(s)	570
PagI	TCATGA	1 cut(s)	754
PaqCI	CACCTGC	1 cut(s)	1238
PciI	ACATGT	1 cut(s)	759
PctI	GAATGC	1 cut(s)	1180
PfeI	GAWTC	2 cut(s)	54, 1058
PleI	GAGTC	3 cut(s)	311, 362, 831
PpsI	GAGTC	3 cut(s)	311, 362, 831
PscI	ACATGT	1 cut(s)	759
Psp6I	CCWGG	2 cut(s)	536, 860
PspEI	GGTNACC	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	941
PspGI	CCWGG	2 cut(s)	536, 860
PspN4I	GGNNCC	3 cut(s)	256, 299, 806
PspPI	GGNCC	4 cut(s)	255, 394, 412, 540
PstI	CTGCAG	2 cut(s)	13, 266
PvuII	CAGCTG	2 cut(s)	261, 326
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	5 cut(s)	34, 335, 570, 1005, 1035
SalI	GTCGAC	1 cut(s)	674
SaqAI	TTAA	3 cut(s)	180, 924, 1224
Sau3AI	GATC	5 cut(s)	657, 780, 876, 912, 1279
Sau96I	GGNCC	4 cut(s)	255, 394, 412, 540
SchI	GAGTC	3 cut(s)	312, 362, 831
ScrFI	CCNGG	3 cut(s)	538, 581, 862
SduI	GDGCHC	2 cut(s)	300, 1077
SfaNI	GCATC	2 cut(s)	987, 1111
SfcI	CTRYAG	2 cut(s)	9, 262
SfuI	TTCGAA	1 cut(s)	507
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	5 cut(s)	34, 335, 570, 1005, 1035
SmlI	CTYRAG	3 cut(s)	521, 1223, 1263
SmoI	CTYRAG	3 cut(s)	521, 1223, 1263
Sse9I	AATT	2 cut(s)	153, 162
SspMI	CTAG	6 cut(s)	51, 311, 405, 888, 993, 1302
StyD4I	CCNGG	3 cut(s)	536, 579, 860
StyI	CCWWGG	2 cut(s)	653, 721
TaaI	ACNGT	5 cut(s)	24, 479, 597, 1079, 1144
TaiI	ACGT	1 cut(s)	912
TaqI	TCGA	6 cut(s)	384, 507, 675, 842, 906, 1215
TasI	AATT	2 cut(s)	153, 162
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	5 cut(s)	286, 323, 417, 520, 1020
TfiI	GAWTC	2 cut(s)	54, 1058
Tru1I	TTAA	3 cut(s)	180, 924, 1224
Tru9I	TTAA	3 cut(s)	180, 924, 1224
TscAI	CASTG	4 cut(s)	41, 337, 922, 1082
TseFI	GTSAC	2 cut(s)	572, 917
Tsp45I	GTSAC	2 cut(s)	572, 917
TspDTI	ATGAA	3 cut(s)	146, 1019, 1256
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	4 cut(s)	41, 337, 922, 1082
Vha464I	CTTAAG	1 cut(s)	1223
VneI	GTGCAC	1 cut(s)	1073
VpaK11BI	GGWCC	1 cut(s)	255
XbaI	TCTAGA	2 cut(s)	50, 887
XceI	RCATGY	1 cut(s)	763
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	6 cut(s)	51, 311, 405, 888, 993, 1302
Zsp2I	ATGCAT	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.