FvH4_2g37240

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
27159163 .. 27160646
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37240.t1

Sequence Viewer

Length: 1386 bp
ATGGGAATTACAGCACCATTTCTAGGAGTAGGAACGAGCTCCGGTTATGGCAGTTGTGAATACCGCCCTAGATTTTCAACTACCAACCAGAACCACCGGTCCATATCCAAATTCAGATTACCTCTCCCGCGCAGCTCAAAATCAAACCCTCTCACTTCCAACAATACTACTAGAAAGAAGAACAATACAAGGAAGAAGAGGAAAAAGAATGAGAATGGGTCGAGGTGCAGCACCTCCGATATTCTGCGGTTGATGGATGGGCTCCAAGTCCCAGTAACATCAACAACTCTATCTGACAATCACATGTACGCTTCTCTCATCAACGATTGTTCCGACTCCGGCGCGGCTCTCCACTTACAGGCCCACCTCACTAGAAAGAGCCCACCACCTCCTCTACATTTGCTCAACCGCCTGCTTCTCCGTCACGTCTGTAACGGCCGTTTGGATAATGCCCACCAGCTGTTCGATGAAATGCCGCTTAAGGACTTCAACTCCTGGGCCACCTTGATAGTTGCGTATGCCCAAAATGCCGACTACGCGGAGGCCCTGAGGTTGTTCCTGAGCATGCTGCACCTGCAGGACTGTCATGTTGATATCTCGGAGTTTCCTGCTTGGATCATGGCTTGTGTTCTCGACGCTACGATGGATGTGGGATTAGGGGAGCAGCTCCATGGCTGCTGTCTCAAGTTGGGTCATGCTAATCGTGATATGTTTGTTGCCACCTCCTTGATCAACTTGTACGGCAGATTGAGGTGCCATGAAGCTGCGCAACGCGCCTCCCTTGGGCTCTCGCAGCCTAATGCGCTGACATGGACGGCTAGGATGATCAACAACTCTAGAGGAGAGCGGTTTTTTGAAGTGATCAGTGACTTTAAGGAAATAGGGAGGGCTGGGATAAGTAAGAACACTAGTATGATCTCTTGTGTCCTCAGGGCGTGTGCTAGGATGCATGATAGTGGTTTCAGGGGCAGACAAGTTCATGCCAATGCCATCAAACTTGGTGTGGATTCCCATTCTTTTGTGCACTGCGGGTTAATTGATATGTATGGAAGAAACGGGCTACTTAGAGATGCGAAACTGGTGTTTCAGACGTTCAACGATACAACATCTACTGCGTGTTGGAATGCCATGCTTACAAATTACTTGCGGAATGGGTTACACATCGAAGCCCTCAAGTTTCTTTATGAGATGCAGGCAGATGGGTTGCAGCCTCAGGAATATCTGCTGGATCAAGTGAGGATTGCTTGCGCTAGTAATGAAGACATTAAACCAGTGATATGGACACTGCTAGTTCTGCATCTTGATCCTTATCCAGGTCTAAAAAGATTGATGGAGACAAGTGATGGCACTATAGTAGAGCTCAAATCAGATTGGCATATCTGCTGA

Protein Analysis

462

Amino Acids

51.68

Weight (kDa)

8.84

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016028)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 582
Acc16I TGCGCA 1 cut(s) 768
Acc36I ACCTGC 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 753
AccBSI CCGCTC 1 cut(s) 847
AccII CGCG 4 cut(s) 130, 344, 539, 774
AclWI GGATC 3 cut(s) 623, 1236, 1298
AcoI YGGCCR 1 cut(s) 436
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 2 cut(s) 308, 740
AfiI CCNNNNNNNGG 4 cut(s) 23, 358, 783, 1313
AflII CTTAAG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 303
AgeI ACCGGT 1 cut(s) 96
AgsI TTSAA 4 cut(s) 78, 490, 857, 1096
AhlI ACTAGT 1 cut(s) 908
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 2 cut(s) 494, 1312
AloI GAACNNNNNNTCC 2 cut(s) 83, 115
AluBI AGCT 6 cut(s) 39, 135, 460, 667, 764, 1360
AluI AGCT 6 cut(s) 39, 135, 460, 667, 764, 1360
Alw21I GWGCWC 3 cut(s) 41, 1026, 1362
Alw26I GTCTC 2 cut(s) 686, 1328
Alw44I GTGCAC 1 cut(s) 1022
AlwI GGATC 3 cut(s) 623, 1236, 1298
AoxI GGCC 4 cut(s) 360, 436, 498, 543
ApaLI GTGCAC 1 cut(s) 1022
ApeKI GCWGC 8 cut(s) 132, 228, 568, 664, 675, 764, 793, 1207
ApoI RAATTY 1 cut(s) 110
AsiGI ACCGGT 1 cut(s) 96
AspLEI GCGC 6 cut(s) 132, 344, 769, 776, 805, 1250
AspS9I GGNCC 4 cut(s) 99, 361, 498, 544
AvaII GGWCC 1 cut(s) 99
AxyI CCTNAGG 3 cut(s) 548, 929, 1212
BaeGI GKGCMC 1 cut(s) 1026
BanI GGYRCC 1 cut(s) 753
BanII GRGCYC 5 cut(s) 41, 264, 383, 789, 1362
BbsI GAAGAC 1 cut(s) 1266
Bbv12I GWGCWC 3 cut(s) 41, 1026, 1362
BbvI GCAGC 8 cut(s) 144, 240, 555, 662, 676, 751, 805, 1219
BccI CCATC 7 cut(s) 247, 251, 637, 998, 1193, 1324, 1337
BceAI ACGGC 4 cut(s) 423, 451, 757, 831
BciT130I CCWGG 2 cut(s) 496, 1314
BclI TGATCA 3 cut(s) 729, 825, 861
BcoDI GTCTC 2 cut(s) 686, 1328
BcuI ACTAGT 1 cut(s) 908
BfmI CTRYAG 2 cut(s) 575, 1350
BfrI CTTAAG 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 582
Bme1390I CCNGG 2 cut(s) 496, 1314
Bme18I GGWCC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 4 cut(s) 99, 361, 498, 544
BmiI GGNNCC 2 cut(s) 263, 755
BmrFI CCNGG 2 cut(s) 496, 1314
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 4 cut(s) 936, 1060, 1179, 1306
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 1266
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 2 cut(s) 668, 1157
BsaBI GATNNNNATC 1 cut(s) 1308
BsaJI CCNNGG 3 cut(s) 495, 670, 781
BsaWI WCCGGW 2 cut(s) 41, 96
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 358, 783, 1313
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 3 cut(s) 272, 1083, 1271
Bse21I CCTNAGG 3 cut(s) 548, 929, 1212
Bse8I GATNNNNATC 1 cut(s) 1308
BseBI CCWGG 2 cut(s) 496, 1314
BseDI CCNNGG 3 cut(s) 495, 670, 781
BseGI GGATG 4 cut(s) 262, 652, 828, 951
BseJI GATNNNNATC 1 cut(s) 1308
BseLI CCNNNNNNNGG 4 cut(s) 23, 358, 783, 1313
BseMII CTCAG 4 cut(s) 539, 551, 943, 1226
BseNI ACTGG 3 cut(s) 272, 1083, 1271
BseRI GAGGAG 2 cut(s) 381, 855
BseSI GKGCMC 1 cut(s) 1026
BseX3I CGGCCG 1 cut(s) 436
BseXI GCAGC 8 cut(s) 144, 240, 555, 662, 676, 751, 805, 1219
BseYI CCCAGC 1 cut(s) 890
BsgI GTGCAG 2 cut(s) 247, 554
Bsh1236I CGCG 4 cut(s) 130, 344, 539, 774
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 4 cut(s) 362, 438, 500, 545
BshNI GGYRCC 1 cut(s) 753
BshTI ACCGGT 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 3 cut(s) 41, 1026, 1362
BsiSI CCGG 3 cut(s) 42, 97, 339
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 4 cut(s) 23, 358, 783, 1313
BsmAI GTCTC 2 cut(s) 686, 1328
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 1129
BsnI GGCC 4 cut(s) 362, 438, 500, 545
Bsp1286I GDGCHC 6 cut(s) 41, 264, 383, 789, 1026, 1362
Bsp143I GATC 7 cut(s) 615, 729, 825, 861, 915, 1228, 1303
Bsp19I CCATGG 1 cut(s) 670
BspANI GGCC 4 cut(s) 362, 438, 500, 545
BspCNI CTCAG 4 cut(s) 540, 552, 942, 1225
BspFNI CGCG 4 cut(s) 130, 344, 539, 774
BspLI GGNNCC 2 cut(s) 263, 755
BspMAI CTGCAG 1 cut(s) 579
BspMI ACCTGC 1 cut(s) 582
BspPI GGATC 3 cut(s) 623, 1236, 1298
BspT107I GGYRCC 1 cut(s) 753
BspTI CTTAAG 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 847
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 3 cut(s) 272, 1083, 1271
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 3 cut(s) 495, 670, 781
BssMI GATC 7 cut(s) 615, 729, 825, 861, 915, 1228, 1303
BssT1I CCWWGG 2 cut(s) 670, 781
Bst2UI CCWGG 2 cut(s) 496, 1314
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 1 cut(s) 191
BstAFI CTTAAG 1 cut(s) 479
BstC8I GCNNGC 4 cut(s) 413, 566, 1194, 1246
BstDEI CTNAG 5 cut(s) 548, 560, 929, 1064, 1212
BstDSI CCRYGG 1 cut(s) 670
BstENI CCTNNNNNAGG 1 cut(s) 1311
BstF5I GGATG 4 cut(s) 262, 652, 828, 951
BstFNI CGCG 4 cut(s) 130, 344, 539, 774
BstHHI GCGC 6 cut(s) 132, 344, 769, 776, 805, 1250
BstKTI GATC 7 cut(s) 618, 732, 828, 864, 918, 1231, 1306
BstMAI GTCTC 2 cut(s) 686, 1328
BstMBI GATC 7 cut(s) 615, 729, 825, 861, 915, 1228, 1303
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 7 cut(s) 527, 536, 574, 773, 793, 802, 1294
BstNI CCWGG 2 cut(s) 496, 1314
BstNSI RCATGY 2 cut(s) 307, 568
BstSCI CCNGG 2 cut(s) 494, 1312
BstSFI CTRYAG 2 cut(s) 575, 1350
BstSLI GKGCMC 1 cut(s) 1026
BstUI CGCG 4 cut(s) 130, 344, 539, 774
BstV1I GCAGC 8 cut(s) 144, 240, 555, 662, 676, 751, 805, 1219
BstV2I GAAGAC 1 cut(s) 1266
BstXI CCANNNNNNTGG 1 cut(s) 1278
BstZI CGGCCG 1 cut(s) 436
Bsu36I CCTNAGG 3 cut(s) 548, 929, 1212
BsuRI GGCC 4 cut(s) 362, 438, 500, 545
BtgI CCRYGG 1 cut(s) 670
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 4 cut(s) 262, 652, 828, 951
BtsI GCAGTG 2 cut(s) 1024, 1283
BtsIMutI CAGTG 4 cut(s) 871, 1024, 1278, 1283
BveI ACCTGC 1 cut(s) 582
Cac8I GCNNGC 4 cut(s) 413, 566, 1194, 1246
CfoI GCGC 6 cut(s) 132, 344, 769, 776, 805, 1250
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 4 cut(s) 99, 361, 498, 544
CseI GACGC 1 cut(s) 644
Csp6I GTAC 2 cut(s) 307, 739
CspAI ACCGGT 1 cut(s) 96
CviQI GTAC 2 cut(s) 307, 739
DdeI CTNAG 5 cut(s) 548, 560, 929, 1064, 1212
DpnI GATC 7 cut(s) 617, 731, 827, 863, 917, 1230, 1305
DpnII GATC 7 cut(s) 615, 729, 825, 861, 915, 1228, 1303
EaeI YGGCCR 1 cut(s) 436
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 2 cut(s) 39, 1360
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 670, 781
Eco24I GRGCYC 5 cut(s) 41, 264, 383, 789, 1362
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 436
Eco53kI GAGCTC 2 cut(s) 39, 1360
Eco81I CCTNAGG 3 cut(s) 548, 929, 1212
EcoICRI GAGCTC 2 cut(s) 39, 1360
EcoNI CCTNNNNNAGG 1 cut(s) 1311
EcoO109I RGGNCCY 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 494, 1312
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 2 cut(s) 670, 781
EcoT22I ATGCAT 1 cut(s) 951
EcoT38I GRGCYC 5 cut(s) 41, 264, 383, 789, 1362
ErhI CCWWGG 2 cut(s) 670, 781
FaqI GGGAC 1 cut(s) 254
FauI CCCGC 2 cut(s) 135, 1022
FbaI TGATCA 3 cut(s) 729, 825, 861
FokI GGATG 4 cut(s) 269, 659, 835, 958
FriOI GRGCYC 5 cut(s) 41, 264, 383, 789, 1362
FspI TGCGCA 1 cut(s) 768
GlaI GCGC 6 cut(s) 131, 343, 768, 775, 804, 1249
GsaI CCCAGC 1 cut(s) 894
HaeIII GGCC 4 cut(s) 362, 438, 500, 545
HapII CCGG 3 cut(s) 42, 97, 339
HgaI GACGC 1 cut(s) 644
HhaI GCGC 6 cut(s) 132, 344, 769, 776, 805, 1250
Hin6I GCGC 6 cut(s) 130, 342, 767, 774, 803, 1248
HinP1I GCGC 6 cut(s) 130, 342, 767, 774, 803, 1248
HinfI GANTC 2 cut(s) 335, 1007
HpaII CCGG 3 cut(s) 42, 97, 339
Hpy166II GTNNAC 1 cut(s) 1024
Hpy188I TCNGA 7 cut(s) 116, 238, 295, 334, 601, 1089, 1369
Hpy188III TCNNGA 6 cut(s) 559, 632, 704, 837, 1214, 1301
Hpy8I GTNNAC 1 cut(s) 1024
Hpy99I CGWCG 1 cut(s) 638
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 2 cut(s) 426, 1091
HpyCH4V TGCA 8 cut(s) 228, 571, 577, 949, 1024, 1192, 1207, 1297
HpyF10VI GCNNNNNNNGC 7 cut(s) 527, 536, 574, 773, 793, 802, 1294
HpyF3I CTNAG 5 cut(s) 548, 560, 929, 1064, 1212
HpySE526I ACGT 2 cut(s) 426, 1091
HspAI GCGC 6 cut(s) 130, 342, 767, 774, 803, 1248
Ksp22I TGATCA 3 cut(s) 729, 825, 861
Kzo9I GATC 7 cut(s) 615, 729, 825, 861, 915, 1228, 1303
LmnI GCTCC 4 cut(s) 44, 267, 661, 672
Lsp1109I GCAGC 8 cut(s) 144, 240, 555, 662, 676, 751, 805, 1219
LweI GCATC 4 cut(s) 936, 1060, 1179, 1306
MaeII ACGT 2 cut(s) 426, 1091
MaeIII GTNAC 5 cut(s) 274, 422, 431, 866, 1155
MalI GATC 7 cut(s) 617, 731, 827, 863, 917, 1230, 1305
MbiI CCGCTC 1 cut(s) 847
MboI GATC 7 cut(s) 615, 729, 825, 861, 915, 1228, 1303
MboII GAAGA 5 cut(s) 190, 205, 208, 1062, 1271
MhlI GDGCHC 6 cut(s) 41, 264, 383, 789, 1026, 1362
MluCI AATT 4 cut(s) 6, 110, 1035, 1138
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 3 cut(s) 183, 357, 1100
Mph1103I ATGCAT 1 cut(s) 951
MseI TTAA 4 cut(s) 480, 873, 1034, 1266
MslI CAYNNNNRTG 3 cut(s) 911, 954, 984
MspA1I CMGCKG 1 cut(s) 460
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 3 cut(s) 42, 97, 339
MspR9I CCNGG 2 cut(s) 496, 1314
Mva1269I GAATGC 1 cut(s) 1129
MvaI CCWGG 2 cut(s) 496, 1314
MvnI CGCG 4 cut(s) 130, 344, 539, 774
MwoI GCNNNNNNNGC 7 cut(s) 527, 536, 574, 773, 793, 802, 1294
NcoI CCATGG 1 cut(s) 670
NdeII GATC 7 cut(s) 615, 729, 825, 861, 915, 1228, 1303
NlaIV GGNNCC 2 cut(s) 263, 755
NmuCI GTSAC 2 cut(s) 422, 866
NsbI TGCGCA 1 cut(s) 768
NsiI ATGCAT 1 cut(s) 951
NspI RCATGY 2 cut(s) 307, 568
PaeI GCATGC 1 cut(s) 568
PaqCI CACCTGC 1 cut(s) 582
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 1129
PfeI GAWTC 1 cut(s) 1007
PinAI ACCGGT 1 cut(s) 96
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PscI ACATGT 1 cut(s) 303
Psp124BI GAGCTC 2 cut(s) 41, 1362
Psp6I CCWGG 2 cut(s) 494, 1312
PspFI CCCAGC 1 cut(s) 890
PspGI CCWGG 2 cut(s) 494, 1312
PspN4I GGNNCC 2 cut(s) 263, 755
PspPI GGNCC 4 cut(s) 99, 361, 498, 544
PstI CTGCAG 1 cut(s) 579
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 2 cut(s) 308, 740
RsaNI GTAC 2 cut(s) 307, 739
RseI CAYNNNNRTG 3 cut(s) 911, 954, 984
SacI GAGCTC 2 cut(s) 41, 1362
SaqAI TTAA 4 cut(s) 480, 873, 1034, 1266
Sau3AI GATC 7 cut(s) 615, 729, 825, 861, 915, 1228, 1303
Sau96I GGNCC 4 cut(s) 99, 361, 498, 544
SbfI CCTGCAGG 1 cut(s) 579
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 496, 1314
SdaI CCTGCAGG 1 cut(s) 579
SduI GDGCHC 6 cut(s) 41, 264, 383, 789, 1026, 1362
SfaNI GCATC 4 cut(s) 936, 1060, 1179, 1306
SfcI CTRYAG 2 cut(s) 575, 1350
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 3 cut(s) 911, 954, 984
SmlI CTYRAG 3 cut(s) 479, 683, 1172
SmoI CTYRAG 3 cut(s) 479, 683, 1172
SpeI ACTAGT 1 cut(s) 908
SphI GCATGC 1 cut(s) 568
Sse8387I CCTGCAGG 1 cut(s) 579
Sse9I AATT 4 cut(s) 6, 110, 1035, 1138
SstI GAGCTC 2 cut(s) 41, 1362
StyD4I CCNGG 2 cut(s) 494, 1312
StyI CCWWGG 2 cut(s) 670, 781
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 2 cut(s) 429, 1094
TaqI TCGA 4 cut(s) 221, 465, 633, 1164
TasI AATT 4 cut(s) 6, 110, 1035, 1138
TauI GCSGC 2 cut(s) 347, 478
TfiI GAWTC 1 cut(s) 1007
Tru1I TTAA 4 cut(s) 480, 873, 1034, 1266
Tru9I TTAA 4 cut(s) 480, 873, 1034, 1266
TscAI CASTG 4 cut(s) 871, 1031, 1278, 1290
TseFI GTSAC 2 cut(s) 422, 866
TseI GCWGC 8 cut(s) 132, 228, 568, 664, 675, 764, 793, 1207
Tsp45I GTSAC 2 cut(s) 422, 866
TspDTI ATGAA 4 cut(s) 483, 774, 968, 1272
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 4 cut(s) 871, 1031, 1278, 1290
Vha464I CTTAAG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 1022
VpaK11BI GGWCC 1 cut(s) 99
XagI CCTNNNNNAGG 1 cut(s) 1311
XapI RAATTY 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 2 cut(s) 307, 568
Zsp2I ATGCAT 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.