Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016028

Physical Location & Seq

Genomic Coordinates Reverse (-)

5776833 .. 5778134

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGAACTGCAGCACCTCAACAATACACATACCAATGGCAATGCCACTCTAGATTCTCAGCTACCAACCACAACAACCCGTCCATATCCAAAGTCAGGTTACCCCTCCCGCGCAGCTCAAAGTCAAACACTCTTGCCTCCAACAATACTACAACTCCTCCAATTCCAACACCGCCGGTTAAAACCCACCGGAATCGGAATAATAATAATAATATTAGGAAGGGGAAGAACAACAAGAAGAATAGCTGCAGCACCTCCGATATTCTGCGGCTGATGGATGGGCTCCGAGTCCCCGTAGCGACAGCCGCAGCTGACGATGGTATGTATGCTTCTCTCATCAACGATTGCTCGGACTCCGGCGCAGCTCTCGACTTACAGTCCCACCTTACTAGGAAGGGTCGCCGTTACCCACCACCGCCTCTACACTTGCTCAACCGCCTGCTTCTCCGTCACGTCACTAACGGTCGTTTAGACAATGCTCACCACCTGTTCGATGAAATGCCGCTGAAGGACTTCAACTCCTGGGCCACCTTGATAGCTGCTTATGCTCACAATGGTGACTACCTGGAAGCTTTGAGATTGTTTCTGACCATGCTATACCAGCAGGAATACAATGGTGATATGTTTGGTTTTCCTCCATGGATTATGGCTTGCGTTGTCGACGCTTGTGCCTGCACGATGGATATGAGATTAGGGGAGCAACTCCATGGCTGCTGCCTGAAGTTGGGTCATGGTAATCATGATATGCTTGTTGCCACCTCCTTGATCAACTTTTACGGCAGATTGAGGCGCCATGAAGCTGCACACCGTGCTTCTATTGGACTCTCGCAGCCTAATGCCCTCACATTGACGGCTATAATGATCAATAACTCTAGAGGAGAGAGGTTTTTCGACGTGATCAGTGACTTTAATGAAATAGGGAGGGCTGGGATAAACAAGAACACTTGTATGATCTCTTGTGTCCTCAGGGCGTGTGCTAGGATGCATGATGATGGCTGCAGCGGCAGACAAGTTCATGCCAATGCCATCAAACTTGGAGTGGAATCCCATTCTTTCGTGCACTGTGGGTTGGTGGATATGTATGGAAGAAACGGGCTACTTAGAGATGCGAAACTGGTGTTTCAGACGGTCAACGATACAACATCTACTGCGTGTTGGAATGCCATGCTTACAAGTTACTTGCGGAATGGGTTGCACATCGAAGCCCTTAAGTTTCTCTATCAGATGAAGGCAGATGGGTTGCAGCCTCAAGAATATCTGCTGGATCAAGTGAGGATTGCTTGCGCTAGTAATGGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

434

Amino Acids

48.23

Weight (kDa)

9.0

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	385 - 414	5.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31790
fragaria_vesca	FvH4_2g37080 FvH4_2g37240
rosa_chinensis	RchiOBHm_Chr6g0304481
rosa_laevigata	RLG00000010973
rosa_multiflora	Rmu_co8157394.1_g000001 Rmu_co8174882.1_g000001 Rmu_ssc0000218.1_g000054
rosa_roxburghii	Rroxscaffold_7G00163710
rosa_rugosa	Rorug06G0332100
rosa_samantha	Rh6AG444900 Rh6BG457500 Rh6CG457600 Rh6DG444400
rosa_wichuraiana	Rw6G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	789
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	1 cut(s)	112
AciI	CCGC	9 cut(s)	110, 173, 268, 306, 416, 436, 503, 1002, 1183
AclWI	GGATC	1 cut(s)	1272
AcuI	CTGAAG	2 cut(s)	527, 740
AcyI	GRCGYC	1 cut(s)	790
AdeI	CACNNNGTG	1 cut(s)	809
AfiI	CCNNNNNNNGG	2 cut(s)	96, 724
AflII	CTTAAG	1 cut(s)	1208
AgsI	TTSAA	1 cut(s)	517
AhdI	GACNNNNNGTC	1 cut(s)	376
AjiI	CACGTC	2 cut(s)	454, 895
AjnI	CCWGG	2 cut(s)	521, 564
AleI	CACNNNNGTG	1 cut(s)	555
AluBI	AGCT	8 cut(s)	62, 117, 246, 311, 365, 539, 572, 800
AluI	AGCT	8 cut(s)	62, 117, 246, 311, 365, 539, 572, 800
Alw21I	GWGCWC	1 cut(s)	1062
Alw44I	GTGCAC	1 cut(s)	1058
AlwI	GGATC	1 cut(s)	1272
AoxI	GGCC	1 cut(s)	525
ApaLI	GTGCAC	1 cut(s)	1058
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	4 cut(s)	114, 362, 792, 1286
AspS9I	GGNCC	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	473, 569, 629
AxyI	CCTNAGG	1 cut(s)	965
BaeGI	GKGCMC	1 cut(s)	1062
BanI	GGYRCC	1 cut(s)	789
BanII	GRGCYC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	313, 345
Bbv12I	GWGCWC	1 cut(s)	1062
BccI	CCATC	7 cut(s)	268, 272, 311, 673, 986, 1034, 1229
BceAI	ACGGC	3 cut(s)	387, 793, 867
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	523, 566
BclI	TGATCA	3 cut(s)	765, 861, 897
BfaI	CTAG	5 cut(s)	51, 390, 873, 978, 1287
BfmI	CTRYAG	3 cut(s)	9, 247, 997
BfoI	RGCGCY	1 cut(s)	793
BfrI	CTTAAG	1 cut(s)	1208
Bme1390I	CCNGG	2 cut(s)	523, 566
BmeRI	GACNNNNNGTC	1 cut(s)	376
BmgBI	CACGTC	2 cut(s)	454, 895
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	284, 791
BmrFI	CCNGG	2 cut(s)	523, 566
BmsI	GCATC	2 cut(s)	972, 1096
BpuEI	CTTGAG	1 cut(s)	1233
BsaHI	GRCGYC	1 cut(s)	790
BsaJI	CCNNGG	3 cut(s)	522, 638, 706
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	6 cut(s)	139, 142, 169, 172, 503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 724
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	1119
Bse21I	CCTNAGG	1 cut(s)	965
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	523, 566
BseDI	CCNNGG	3 cut(s)	522, 638, 706
BseGI	GGATG	2 cut(s)	283, 987
BseLI	CCNNNNNNNGG	2 cut(s)	96, 724
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	72, 979
BseNI	ACTGG	1 cut(s)	1119
BseRI	GAGGAG	2 cut(s)	147, 891
BseSI	GKGCMC	1 cut(s)	1062
BseYI	CCCAGC	1 cut(s)	926
BsgI	GTGCAG	2 cut(s)	658, 786
Bsh1236I	CGCG	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	1 cut(s)	789
BsiEI	CGRYCG	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	1062
BsiSI	CCGG	3 cut(s)	176, 190, 357
BslFI	GGGAC	2 cut(s)	275, 364
BslI	CCNNNNNNNGG	2 cut(s)	96, 724
BsmFI	GGGAC	2 cut(s)	275, 364
BsmI	GAATGC	1 cut(s)	1165
BsnI	GGCC	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	285, 1062
Bsp143I	GATC	5 cut(s)	765, 861, 897, 951, 1264
Bsp19I	CCATGG	2 cut(s)	638, 706
BspACI	CCGC	9 cut(s)	110, 173, 268, 306, 416, 436, 503, 1002, 1183
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	2 cut(s)	71, 978
BspFNI	CGCG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	284, 791
BspMAI	CTGCAG	3 cut(s)	13, 251, 1001
BspPI	GGATC	1 cut(s)	1272
BspT107I	GGYRCC	1 cut(s)	789
BspTI	CTTAAG	1 cut(s)	1208
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	1119
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	522, 638, 706
BssMI	GATC	5 cut(s)	765, 861, 897, 951, 1264
BssNI	GRCGYC	1 cut(s)	790
BssT1I	CCWWGG	2 cut(s)	638, 706
Bst2UI	CCWGG	2 cut(s)	523, 566
Bst4CI	ACNGT	5 cut(s)	378, 464, 809, 1064, 1129
BstACI	GRCGYC	1 cut(s)	790
BstAFI	CTTAAG	1 cut(s)	1208
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstC8I	GCNNGC	4 cut(s)	440, 652, 673, 1282
BstDEI	CTNAG	3 cut(s)	58, 965, 1100
BstDSI	CCRYGG	2 cut(s)	638, 706
BstEII	GGTNACC	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	283, 987
BstFNI	CGCG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	793
BstHHI	GCGC	4 cut(s)	114, 362, 792, 1286
BstKTI	GATC	5 cut(s)	768, 864, 900, 954, 1267
BstMBI	GATC	5 cut(s)	765, 861, 897, 951, 1264
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 545, 601, 809, 1002
BstNI	CCWGG	2 cut(s)	523, 566
BstPI	GGTNACC	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	521, 564
BstSFI	CTRYAG	3 cut(s)	9, 247, 997
BstSLI	GKGCMC	1 cut(s)	1062
BstUI	CGCG	1 cut(s)	112
Bsu36I	CCTNAGG	1 cut(s)	965
BsuRI	GGCC	1 cut(s)	527
BtgI	CCRYGG	2 cut(s)	638, 706
BtrI	CACGTC	2 cut(s)	454, 895
BtsCI	GGATG	2 cut(s)	283, 987
BtsIMutI	CAGTG	2 cut(s)	907, 1060
Cac8I	GCNNGC	4 cut(s)	440, 652, 673, 1282
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	4 cut(s)	114, 362, 792, 1286
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	525
CseI	GACGC	1 cut(s)	671
CviAII	CATG	9 cut(s)	592, 639, 707, 731, 740, 794, 986, 1016, 1165
DdeI	CTNAG	3 cut(s)	58, 965, 1100
DinI	GGCGCC	1 cut(s)	791
DpnI	GATC	5 cut(s)	767, 863, 899, 953, 1266
DpnII	GATC	5 cut(s)	765, 861, 897, 951, 1264
DraIII	CACNNNGTG	1 cut(s)	809
DriI	GACNNNNNGTC	1 cut(s)	376
Eam1105I	GACNNNNNGTC	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	638, 706
Eco24I	GRGCYC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	527, 740
Eco81I	CCTNAGG	1 cut(s)	965
Eco91I	GGTNACC	1 cut(s)	99
EcoO65I	GGTNACC	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	521, 564
EcoT14I	CCWWGG	2 cut(s)	638, 706
EcoT22I	ATGCAT	1 cut(s)	987
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	791
EheI	GGCGCC	1 cut(s)	791
ErhI	CCWWGG	2 cut(s)	638, 706
FaeI	CATG	9 cut(s)	595, 642, 710, 734, 743, 797, 989, 1019, 1168
FaqI	GGGAC	2 cut(s)	275, 364
FatI	CATG	9 cut(s)	591, 638, 706, 730, 739, 793, 985, 1015, 1164
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	3 cut(s)	765, 861, 897
FblI	GTMKAC	1 cut(s)	660
FokI	GGATG	2 cut(s)	290, 994
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	5 cut(s)	51, 390, 873, 978, 1287
GlaI	GCGC	4 cut(s)	113, 361, 791, 1285
GsaI	CCCAGC	1 cut(s)	930
HaeII	RGCGCY	1 cut(s)	793
HaeIII	GGCC	1 cut(s)	527
HapII	CCGG	3 cut(s)	176, 190, 357
HgaI	GACGC	1 cut(s)	671
HhaI	GCGC	4 cut(s)	114, 362, 792, 1286
Hin1I	GRCGYC	1 cut(s)	790
Hin1II	CATG	9 cut(s)	595, 642, 710, 734, 743, 797, 989, 1019, 1168
Hin6I	GCGC	4 cut(s)	112, 360, 790, 1284
HinP1I	GCGC	4 cut(s)	112, 360, 790, 1284
HincII	GTYRAC	2 cut(s)	661, 1132
HindII	GTYRAC	2 cut(s)	661, 1132
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	6 cut(s)	54, 193, 288, 353, 822, 1043
HpaII	CCGG	3 cut(s)	176, 190, 357
HphI	GGTGA	3 cut(s)	473, 569, 629
Hpy166II	GTNNAC	3 cut(s)	661, 1060, 1132
Hpy188I	TCNGA	7 cut(s)	198, 259, 287, 352, 588, 1125, 1224
Hpy188III	TCNNGA	5 cut(s)	51, 368, 740, 873, 1250
Hpy8I	GTNNAC	3 cut(s)	661, 1060, 1132
Hpy99I	CGWCG	2 cut(s)	665, 896
HpyAV	CCTTC	4 cut(s)	214, 388, 502, 1222
HpyCH4III	ACNGT	5 cut(s)	378, 464, 809, 1064, 1129
HpyCH4IV	ACGT	2 cut(s)	453, 894
HpyCH4V	TGCA	9 cut(s)	11, 249, 675, 803, 985, 999, 1060, 1195, 1243
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 545, 601, 809, 1002
HpyF3I	CTNAG	3 cut(s)	58, 965, 1100
HpySE526I	ACGT	2 cut(s)	453, 894
Hsp92I	GRCGYC	1 cut(s)	790
Hsp92II	CATG	9 cut(s)	595, 642, 710, 734, 743, 797, 989, 1019, 1168
HspAI	GCGC	4 cut(s)	112, 360, 790, 1284
KasI	GGCGCC	1 cut(s)	789
Ksp22I	TGATCA	3 cut(s)	765, 861, 897
Kzo9I	GATC	5 cut(s)	765, 861, 897, 951, 1264
LmnI	GCTCC	2 cut(s)	288, 697
LweI	GCATC	2 cut(s)	972, 1096
MaeI	CTAG	5 cut(s)	51, 390, 873, 978, 1287
MaeII	ACGT	2 cut(s)	453, 894
MaeIII	GTNAC	7 cut(s)	99, 404, 449, 454, 557, 902, 1175
MalI	GATC	5 cut(s)	767, 863, 899, 953, 1266
MboI	GATC	5 cut(s)	765, 861, 897, 951, 1264
MboII	GAAGA	3 cut(s)	238, 250, 1098
MhlI	GDGCHC	2 cut(s)	285, 1062
MluCI	AATT	1 cut(s)	162
Mly113I	GGCGCC	1 cut(s)	790
MlyI	GAGTC	3 cut(s)	297, 347, 816
MmeI	TCCRAC	3 cut(s)	165, 191, 1136
Mph1103I	ATGCAT	1 cut(s)	987
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	3 cut(s)	180, 909, 1209
MslI	CAYNNNNRTG	5 cut(s)	34, 555, 947, 990, 1020
MspA1I	CMGCKG	3 cut(s)	311, 505, 1002
MspCI	CTTAAG	1 cut(s)	1208
MspI	CCGG	3 cut(s)	176, 190, 357
MspR9I	CCNGG	2 cut(s)	523, 566
Mva1269I	GAATGC	1 cut(s)	1165
MvaI	CCWGG	2 cut(s)	523, 566
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	5 cut(s)	305, 545, 601, 809, 1002
NarI	GGCGCC	1 cut(s)	790
NcoI	CCATGG	2 cut(s)	638, 706
NdeII	GATC	5 cut(s)	765, 861, 897, 951, 1264
NlaIII	CATG	9 cut(s)	595, 642, 710, 734, 743, 797, 989, 1019, 1168
NlaIV	GGNNCC	2 cut(s)	284, 791
NmuCI	GTSAC	4 cut(s)	449, 454, 557, 902
NsiI	ATGCAT	1 cut(s)	987
OliI	CACNNNNGTG	1 cut(s)	555
PagI	TCATGA	1 cut(s)	739
PctI	GAATGC	1 cut(s)	1165
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	54, 193, 1043
PleI	GAGTC	3 cut(s)	296, 347, 816
PluTI	GGCGCC	1 cut(s)	793
PpsI	GAGTC	3 cut(s)	296, 347, 816
Psp6I	CCWGG	2 cut(s)	521, 564
PspEI	GGTNACC	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	926
PspGI	CCWGG	2 cut(s)	521, 564
PspN4I	GGNNCC	2 cut(s)	284, 791
PspPI	GGNCC	1 cut(s)	525
PstI	CTGCAG	3 cut(s)	13, 251, 1001
PvuII	CAGCTG	1 cut(s)	311
RseI	CAYNNNNRTG	5 cut(s)	34, 555, 947, 990, 1020
SalI	GTCGAC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	180, 909, 1209
Sau3AI	GATC	5 cut(s)	765, 861, 897, 951, 1264
Sau96I	GGNCC	1 cut(s)	525
SchI	GAGTC	3 cut(s)	297, 347, 816
ScrFI	CCNGG	2 cut(s)	523, 566
SduI	GDGCHC	2 cut(s)	285, 1062
SfaNI	GCATC	2 cut(s)	972, 1096
SfcI	CTRYAG	3 cut(s)	9, 247, 997
SfoI	GGCGCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	5 cut(s)	34, 555, 947, 990, 1020
SmlI	CTYRAG	2 cut(s)	1208, 1248
SmoI	CTYRAG	2 cut(s)	1208, 1248
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	9 cut(s)	110, 173, 268, 306, 416, 436, 503, 1002, 1183
SspDI	GGCGCC	1 cut(s)	789
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	5 cut(s)	51, 390, 873, 978, 1287
StyD4I	CCNGG	2 cut(s)	521, 564
StyI	CCWWGG	2 cut(s)	638, 706
TaaI	ACNGT	5 cut(s)	378, 464, 809, 1064, 1129
TaiI	ACGT	2 cut(s)	456, 897
TaqI	TCGA	5 cut(s)	369, 492, 660, 891, 1200
TasI	AATT	1 cut(s)	162
TauI	GCSGC	4 cut(s)	271, 308, 505, 1005
TfiI	GAWTC	3 cut(s)	54, 193, 1043
Tru1I	TTAA	3 cut(s)	180, 909, 1209
Tru9I	TTAA	3 cut(s)	180, 909, 1209
TscAI	CASTG	2 cut(s)	907, 1067
TseFI	GTSAC	4 cut(s)	449, 454, 557, 902
Tsp45I	GTSAC	4 cut(s)	449, 454, 557, 902
TspDTI	ATGAA	5 cut(s)	510, 810, 927, 1004, 1241
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	2 cut(s)	907, 1067
Vha464I	CTTAAG	1 cut(s)	1208
VneI	GTGCAC	1 cut(s)	1058
XbaI	TCTAGA	2 cut(s)	50, 872
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	5 cut(s)	51, 390, 873, 978, 1287
Zsp2I	ATGCAT	1 cut(s)	987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.