Belongs to the DEAD box helicase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31970 |
| fragaria_vesca | FvH4_5g23490 |
| malus_domestica | MD00G1068700.v1.1 MD06G1023800.v1.1 |
| prunus_persica | Prupe.5G024900_v2.0.a1 |
| pyrus_communis | pycom16g25290 |
| rosa_chinensis | RchiOBHm_Chr7g0212761 |
| rosa_laevigata | RLG00000002870 |
| rosa_multiflora | Rmu_sc0000394.1_g000033 Rmu_sc0008336.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00246570 Rroxscaffold_3G00250790 Rroxscaffold_4G00321740 Rroxscaffold_4G00321750 |
| rosa_rugosa | Rorug07G0136500 |
| rosa_samantha | Rh7BG263500 Rh7CG287100 |
| rosa_wichuraiana | Rw7G023130 Rw7G023160 Rw7G023230 Rw7G023270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1379 |
| AccI | GTMKAC | 1 cut(s) | 990 |
| AccII | CGCG | 1 cut(s) | 1048 |
| AciI | CCGC | 1 cut(s) | 1379 |
| AclWI | GGATC | 5 cut(s) | 565, 950, 963, 1239, 1252 |
| AcoI | YGGCCR | 1 cut(s) | 434 |
| AcsI | RAATTY | 2 cut(s) | 364, 947 |
| AcuI | CTGAAG | 1 cut(s) | 1142 |
| AfaI | GTAC | 4 cut(s) | 335, 742, 1216, 1353 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 32, 1258, 1303 |
| AgsI | TTSAA | 7 cut(s) | 257, 346, 532, 661, 1237, 1492, 1546 |
| AjiI | CACGTC | 1 cut(s) | 1303 |
| AjnI | CCWGG | 3 cut(s) | 745, 942, 1217 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1091, 1123 |
| AleI | CACNNNNGTG | 1 cut(s) | 430 |
| Alw21I | GWGCWC | 1 cut(s) | 1540 |
| Alw26I | GTCTC | 6 cut(s) | 34, 417, 753, 791, 1064, 1148 |
| AlwI | GGATC | 5 cut(s) | 565, 950, 963, 1239, 1252 |
| Ama87I | CYCGRG | 1 cut(s) | 1145 |
| AoxI | GGCC | 4 cut(s) | 434, 695, 917, 939 |
| ApeKI | GCWGC | 4 cut(s) | 338, 998, 1277, 1556 |
| ApoI | RAATTY | 2 cut(s) | 364, 947 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 467, 499 |
| AspLEI | GCGC | 1 cut(s) | 1048 |
| AspS9I | GGNCC | 2 cut(s) | 695, 940 |
| AsuC2I | CCSGG | 2 cut(s) | 242, 1298 |
| AsuHPI | GGTGA | 1 cut(s) | 985 |
| AvaI | CYCGRG | 1 cut(s) | 1145 |
| BamHI | GGATCC | 2 cut(s) | 955, 1244 |
| BanII | GRGCYC | 1 cut(s) | 1540 |
| BauI | CACGAG | 1 cut(s) | 600 |
| BbsI | GAAGAC | 1 cut(s) | 353 |
| Bbv12I | GWGCWC | 1 cut(s) | 1540 |
| BbvCI | CCTCAGC | 1 cut(s) | 261 |
| BbvI | GCAGC | 4 cut(s) | 350, 985, 1289, 1543 |
| BccI | CCATC | 1 cut(s) | 443 |
| BceAI | ACGGC | 3 cut(s) | 32, 394, 421 |
| BciT130I | CCWGG | 3 cut(s) | 747, 944, 1219 |
| BclI | TGATCA | 2 cut(s) | 975, 1051 |
| BcnI | CCSGG | 2 cut(s) | 242, 1298 |
| BcoDI | GTCTC | 6 cut(s) | 34, 417, 753, 791, 1064, 1148 |
| BfaI | CTAG | 2 cut(s) | 1073, 1612 |
| BfmI | CTRYAG | 1 cut(s) | 987 |
| BisI | GCNGC | 4 cut(s) | 339, 999, 1278, 1557 |
| BlsI | GCNGC | 4 cut(s) | 340, 1000, 1279, 1558 |
| Bme1390I | CCNGG | 5 cut(s) | 242, 747, 944, 1219, 1298 |
| BmeT110I | CYCGRG | 1 cut(s) | 1145 |
| BmgBI | CACGTC | 1 cut(s) | 1303 |
| BmgT120I | GGNCC | 2 cut(s) | 695, 940 |
| BmiI | GGNNCC | 3 cut(s) | 852, 957, 1246 |
| BmrFI | CCNGG | 5 cut(s) | 242, 747, 944, 1219, 1298 |
| BmrI | ACTGGG | 2 cut(s) | 318, 489 |
| BmsI | GCATC | 1 cut(s) | 1552 |
| BmuI | ACTGGG | 2 cut(s) | 318, 489 |
| BpiI | GAAGAC | 1 cut(s) | 353 |
| BpmI | CTGGAG | 2 cut(s) | 663, 741 |
| Bpu10I | CCTNAGC | 1 cut(s) | 261 |
| BpuEI | CTTGAG | 1 cut(s) | 120 |
| BpuMI | CCSGG | 2 cut(s) | 242, 1298 |
| Bsa29I | ATCGAT | 1 cut(s) | 665 |
| BsaAI | YACGTR | 1 cut(s) | 432 |
| BsaBI | GATNNNNATC | 1 cut(s) | 960 |
| BsaJI | CCNNGG | 1 cut(s) | 942 |
| BsaWI | WCCGGW | 1 cut(s) | 858 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 197, 227, 1428, 1458 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 32, 1258, 1303 |
| Bse1I | ACTGG | 3 cut(s) | 313, 484, 1263 |
| Bse3DI | GCAATG | 1 cut(s) | 1062 |
| Bse8I | GATNNNNATC | 1 cut(s) | 960 |
| BseBI | CCWGG | 3 cut(s) | 747, 944, 1219 |
| BseCI | ATCGAT | 1 cut(s) | 665 |
| BseDI | CCNNGG | 1 cut(s) | 942 |
| BseGI | GGATG | 5 cut(s) | 241, 799, 820, 931, 1042 |
| BseJI | GATNNNNATC | 1 cut(s) | 960 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 32, 1258, 1303 |
| BseMI | GCAATG | 1 cut(s) | 1062 |
| BseMII | CTCAG | 2 cut(s) | 207, 252 |
| BseNI | ACTGG | 3 cut(s) | 313, 484, 1263 |
| BseRI | GAGGAG | 1 cut(s) | 218 |
| BseXI | GCAGC | 4 cut(s) | 350, 985, 1289, 1543 |
| Bsh1236I | CGCG | 1 cut(s) | 1048 |
| BshFI | GGCC | 4 cut(s) | 436, 697, 919, 941 |
| BshVI | ATCGAT | 1 cut(s) | 665 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1540 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1145 |
| BsiSI | CCGG | 5 cut(s) | 33, 242, 371, 859, 1298 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 32, 1258, 1303 |
| BsmAI | GTCTC | 6 cut(s) | 34, 417, 753, 791, 1064, 1148 |
| BsmBI | CGTCTC | 5 cut(s) | 34, 417, 791, 1064, 1148 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsmI | GAATGC | 1 cut(s) | 834 |
| BsnI | GGCC | 4 cut(s) | 436, 697, 919, 941 |
| BsoBI | CYCGRG | 1 cut(s) | 1145 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1540 |
| Bsp1407I | TGTACA | 1 cut(s) | 1351 |
| BspACI | CCGC | 1 cut(s) | 1379 |
| BspANI | GGCC | 4 cut(s) | 436, 697, 919, 941 |
| BspCNI | CTCAG | 2 cut(s) | 208, 253 |
| BspDI | ATCGAT | 1 cut(s) | 665 |
| BspFNI | CGCG | 1 cut(s) | 1048 |
| BspHI | TCATGA | 1 cut(s) | 115 |
| BspLI | GGNNCC | 3 cut(s) | 852, 957, 1246 |
| BspPI | GGATC | 5 cut(s) | 565, 950, 963, 1239, 1252 |
| BspQI | GCTCTTC | 1 cut(s) | 1369 |
| BsrBI | CCGCTC | 1 cut(s) | 1379 |
| BsrDI | GCAATG | 1 cut(s) | 1062 |
| BsrGI | TGTACA | 1 cut(s) | 1351 |
| BsrI | ACTGG | 3 cut(s) | 313, 484, 1263 |
| BssECI | CCNNGG | 1 cut(s) | 942 |
| BssSI | CACGAG | 1 cut(s) | 600 |
| Bst2BI | CACGAG | 1 cut(s) | 600 |
| Bst2UI | CCWGG | 3 cut(s) | 747, 944, 1219 |
| Bst4CI | ACNGT | 1 cut(s) | 651 |
| Bst6I | CTCTTC | 2 cut(s) | 156, 1369 |
| BstAUI | TGTACA | 1 cut(s) | 1351 |
| BstBAI | YACGTR | 1 cut(s) | 432 |
| BstC8I | GCNNGC | 1 cut(s) | 1479 |
| BstDEI | CTNAG | 4 cut(s) | 216, 261, 994, 1454 |
| BstF5I | GGATG | 5 cut(s) | 241, 799, 820, 931, 1042 |
| BstFNI | CGCG | 1 cut(s) | 1048 |
| BstHHI | GCGC | 1 cut(s) | 1048 |
| BstMAI | GTCTC | 6 cut(s) | 34, 417, 753, 791, 1064, 1148 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 335, 1054, 1562, 1571 |
| BstNI | CCWGG | 3 cut(s) | 747, 944, 1219 |
| BstNSI | RCATGY | 1 cut(s) | 527 |
| BstSCI | CCNGG | 5 cut(s) | 240, 745, 942, 1217, 1296 |
| BstSFI | CTRYAG | 1 cut(s) | 987 |
| BstUI | CGCG | 1 cut(s) | 1048 |
| BstV1I | GCAGC | 4 cut(s) | 350, 985, 1289, 1543 |
| BstV2I | GAAGAC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 2 cut(s) | 955, 1244 |
| BstYI | RGATCY | 2 cut(s) | 955, 1244 |
| Bsu15I | ATCGAT | 1 cut(s) | 665 |
| BsuRI | GGCC | 4 cut(s) | 436, 697, 919, 941 |
| BsuTUI | ATCGAT | 1 cut(s) | 665 |
| BtrI | CACGTC | 1 cut(s) | 1303 |
| BtsCI | GGATG | 5 cut(s) | 241, 799, 820, 931, 1042 |
| BtsIMutI | CAGTG | 2 cut(s) | 913, 1415 |
| Cac8I | GCNNGC | 1 cut(s) | 1479 |
| CciI | TCATGA | 1 cut(s) | 115 |
| CfoI | GCGC | 1 cut(s) | 1048 |
| Cfr13I | GGNCC | 2 cut(s) | 695, 940 |
| ClaI | ATCGAT | 1 cut(s) | 665 |
| CseI | GACGC | 1 cut(s) | 1046 |
| CsiI | ACCWGGT | 1 cut(s) | 1217 |
| Csp6I | GTAC | 4 cut(s) | 334, 741, 1215, 1352 |
| CviAII | CATG | 4 cut(s) | 116, 524, 952, 1505 |
| CviQI | GTAC | 4 cut(s) | 334, 741, 1215, 1352 |
| DdeI | CTNAG | 4 cut(s) | 216, 261, 994, 1454 |
| EaeI | YGGCCR | 1 cut(s) | 434 |
| Eam1104I | CTCTTC | 2 cut(s) | 156, 1369 |
| EarI | CTCTTC | 2 cut(s) | 156, 1369 |
| Ecl136II | GAGCTC | 1 cut(s) | 1538 |
| Eco24I | GRGCYC | 1 cut(s) | 1540 |
| Eco32I | GATATC | 1 cut(s) | 1294 |
| Eco53kI | GAGCTC | 1 cut(s) | 1538 |
| Eco57I | CTGAAG | 1 cut(s) | 1142 |
| Eco88I | CYCGRG | 1 cut(s) | 1145 |
| EcoICRI | GAGCTC | 1 cut(s) | 1538 |
| EcoO109I | RGGNCCY | 1 cut(s) | 695 |
| EcoRI | GAATTC | 1 cut(s) | 947 |
| EcoRII | CCWGG | 3 cut(s) | 745, 942, 1217 |
| EcoRV | GATATC | 1 cut(s) | 1294 |
| EcoT22I | ATGCAT | 1 cut(s) | 525 |
| EcoT38I | GRGCYC | 1 cut(s) | 1540 |
| Esp3I | CGTCTC | 5 cut(s) | 34, 417, 791, 1064, 1148 |
| FaeI | CATG | 4 cut(s) | 119, 527, 955, 1508 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| FatI | CATG | 4 cut(s) | 115, 523, 951, 1504 |
| FauI | CCCGC | 1 cut(s) | 1372 |
| FbaI | TGATCA | 2 cut(s) | 975, 1051 |
| FblI | GTMKAC | 1 cut(s) | 990 |
| Fnu4HI | GCNGC | 4 cut(s) | 339, 999, 1278, 1557 |
| FokI | GGATG | 5 cut(s) | 248, 806, 827, 938, 1049 |
| FriOI | GRGCYC | 1 cut(s) | 1540 |
| Fsp4HI | GCNGC | 4 cut(s) | 339, 999, 1278, 1557 |
| FspBI | CTAG | 2 cut(s) | 1073, 1612 |
| GlaI | GCGC | 1 cut(s) | 1047 |
| GluI | GCNGC | 4 cut(s) | 339, 999, 1278, 1557 |
| GsuI | CTGGAG | 2 cut(s) | 663, 741 |
| HaeIII | GGCC | 4 cut(s) | 436, 697, 919, 941 |
| HapII | CCGG | 5 cut(s) | 33, 242, 371, 859, 1298 |
| HgaI | GACGC | 1 cut(s) | 1046 |
| HhaI | GCGC | 1 cut(s) | 1048 |
| Hin1II | CATG | 4 cut(s) | 119, 527, 955, 1508 |
| Hin6I | GCGC | 1 cut(s) | 1046 |
| HinP1I | GCGC | 1 cut(s) | 1046 |
| HindIII | AAGCTT | 1 cut(s) | 251 |
| HinfI | GANTC | 8 cut(s) | 55, 212, 359, 418, 508, 770, 1359, 1520 |
| HpaII | CCGG | 5 cut(s) | 33, 242, 371, 859, 1298 |
| HphI | GGTGA | 1 cut(s) | 985 |
| Hpy166II | GTNNAC | 4 cut(s) | 287, 931, 991, 1354 |
| Hpy188I | TCNGA | 7 cut(s) | 60, 217, 417, 618, 625, 793, 1600 |
| Hpy188III | TCNNGA | 8 cut(s) | 52, 116, 137, 403, 466, 720, 1145, 1363 |
| Hpy8I | GTNNAC | 4 cut(s) | 287, 931, 991, 1354 |
| Hpy99I | CGWCG | 2 cut(s) | 53, 1013 |
| HpyAV | CCTTC | 6 cut(s) | 226, 269, 289, 559, 1235, 1414 |
| HpyCH4III | ACNGT | 1 cut(s) | 651 |
| HpyCH4IV | ACGT | 7 cut(s) | 193, 431, 1011, 1042, 1141, 1213, 1302 |
| HpyCH4V | TGCA | 8 cut(s) | 523, 710, 911, 1018, 1067, 1277, 1397, 1433 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 335, 1054, 1562, 1571 |
| HpyF3I | CTNAG | 4 cut(s) | 216, 261, 994, 1454 |
| HpySE526I | ACGT | 7 cut(s) | 193, 431, 1011, 1042, 1141, 1213, 1302 |
| Hsp92II | CATG | 4 cut(s) | 119, 527, 955, 1508 |
| HspAI | GCGC | 1 cut(s) | 1046 |
| Ksp22I | TGATCA | 2 cut(s) | 975, 1051 |
| LguI | GCTCTTC | 1 cut(s) | 1369 |
| LmnI | GCTCC | 2 cut(s) | 1535, 1570 |
| Lsp1109I | GCAGC | 4 cut(s) | 350, 985, 1289, 1543 |
| LweI | GCATC | 1 cut(s) | 1552 |
| MabI | ACCWGGT | 1 cut(s) | 1217 |
| MaeI | CTAG | 2 cut(s) | 1073, 1612 |
| MaeII | ACGT | 7 cut(s) | 193, 431, 1011, 1042, 1141, 1213, 1302 |
| MaeIII | GTNAC | 5 cut(s) | 142, 304, 423, 872, 1254 |
| MbiI | CCGCTC | 1 cut(s) | 1379 |
| MflI | RGATCY | 2 cut(s) | 955, 1244 |
| MhlI | GDGCHC | 1 cut(s) | 1540 |
| MluCI | AATT | 7 cut(s) | 364, 605, 711, 935, 947, 1526, 1594 |
| MlyI | GAGTC | 3 cut(s) | 64, 221, 779 |
| MmeI | TCCRAC | 1 cut(s) | 1151 |
| Mph1103I | ATGCAT | 1 cut(s) | 525 |
| MseI | TTAA | 2 cut(s) | 570, 1334 |
| MslI | CAYNNNNRTG | 1 cut(s) | 430 |
| MspA1I | CMGCKG | 1 cut(s) | 1481 |
| MspI | CCGG | 5 cut(s) | 33, 242, 371, 859, 1298 |
| MspR9I | CCNGG | 5 cut(s) | 242, 747, 944, 1219, 1298 |
| Mva1269I | GAATGC | 1 cut(s) | 834 |
| MvaI | CCWGG | 3 cut(s) | 747, 944, 1219 |
| MvnI | CGCG | 1 cut(s) | 1048 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 335, 1054, 1562, 1571 |
| NciI | CCSGG | 2 cut(s) | 242, 1298 |
| NlaIII | CATG | 4 cut(s) | 119, 527, 955, 1508 |
| NlaIV | GGNNCC | 3 cut(s) | 852, 957, 1246 |
| NmuCI | GTSAC | 3 cut(s) | 142, 304, 423 |
| NsiI | ATGCAT | 1 cut(s) | 525 |
| NspI | RCATGY | 1 cut(s) | 527 |
| OliI | CACNNNNGTG | 1 cut(s) | 430 |
| PaeR7I | CTCGAG | 1 cut(s) | 1145 |
| PagI | TCATGA | 1 cut(s) | 115 |
| PciSI | GCTCTTC | 1 cut(s) | 1369 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1147 |
| PctI | GAATGC | 1 cut(s) | 834 |
| PfeI | GAWTC | 5 cut(s) | 359, 418, 508, 1359, 1520 |
| PfoI | TCCNGGA | 2 cut(s) | 240, 1296 |
| PkrI | GCNGC | 4 cut(s) | 340, 1000, 1279, 1558 |
| PleI | GAGTC | 3 cut(s) | 63, 220, 778 |
| PpsI | GAGTC | 3 cut(s) | 63, 220, 778 |
| Ppu21I | YACGTR | 1 cut(s) | 432 |
| Psp124BI | GAGCTC | 1 cut(s) | 1540 |
| Psp6I | CCWGG | 3 cut(s) | 745, 942, 1217 |
| PspGI | CCWGG | 3 cut(s) | 745, 942, 1217 |
| PspN4I | GGNNCC | 3 cut(s) | 852, 957, 1246 |
| PspPI | GGNCC | 2 cut(s) | 695, 940 |
| PsuI | RGATCY | 2 cut(s) | 955, 1244 |
| PvuII | CAGCTG | 1 cut(s) | 1481 |
| RsaI | GTAC | 4 cut(s) | 335, 742, 1216, 1353 |
| RsaNI | GTAC | 4 cut(s) | 334, 741, 1215, 1352 |
| RseI | CAYNNNNRTG | 1 cut(s) | 430 |
| SacI | GAGCTC | 1 cut(s) | 1540 |
| SapI | GCTCTTC | 1 cut(s) | 1369 |
| SaqAI | TTAA | 2 cut(s) | 570, 1334 |
| SatI | GCNGC | 4 cut(s) | 339, 999, 1278, 1557 |
| Sau96I | GGNCC | 2 cut(s) | 695, 940 |
| SchI | GAGTC | 3 cut(s) | 64, 221, 779 |
| ScrFI | CCNGG | 5 cut(s) | 242, 747, 944, 1219, 1298 |
| SduI | GDGCHC | 1 cut(s) | 1540 |
| SexAI | ACCWGGT | 1 cut(s) | 1217 |
| SfaNI | GCATC | 1 cut(s) | 1552 |
| SfcI | CTRYAG | 1 cut(s) | 987 |
| Sfr274I | CTCGAG | 1 cut(s) | 1145 |
| SlaI | CTCGAG | 1 cut(s) | 1145 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 430 |
| SmlI | CTYRAG | 2 cut(s) | 135, 1145 |
| SmoI | CTYRAG | 2 cut(s) | 135, 1145 |
| Sse9I | AATT | 7 cut(s) | 364, 605, 711, 935, 947, 1526, 1594 |
| SsiI | CCGC | 1 cut(s) | 1379 |
| SspMI | CTAG | 2 cut(s) | 1073, 1612 |
| SstI | GAGCTC | 1 cut(s) | 1540 |
| StyD4I | CCNGG | 5 cut(s) | 240, 745, 942, 1217, 1296 |
| TaaI | ACNGT | 1 cut(s) | 651 |
| TaiI | ACGT | 7 cut(s) | 196, 434, 1014, 1045, 1144, 1216, 1305 |
| TasI | AATT | 7 cut(s) | 364, 605, 711, 935, 947, 1526, 1594 |
| TatI | WGTACW | 1 cut(s) | 1351 |
| TfiI | GAWTC | 5 cut(s) | 359, 418, 508, 1359, 1520 |
| Tru1I | TTAA | 2 cut(s) | 570, 1334 |
| Tru9I | TTAA | 2 cut(s) | 570, 1334 |
| TscAI | CASTG | 2 cut(s) | 913, 1422 |
| TseFI | GTSAC | 3 cut(s) | 142, 304, 423 |
| TseI | GCWGC | 4 cut(s) | 338, 998, 1277, 1556 |
| Tsp45I | GTSAC | 3 cut(s) | 142, 304, 423 |
| TspDTI | ATGAA | 4 cut(s) | 132, 831, 940, 1053 |
| TspGWI | ACGGA | 1 cut(s) | 1206 |
| TspRI | CASTG | 2 cut(s) | 913, 1422 |
| XapI | RAATTY | 2 cut(s) | 364, 947 |
| XceI | RCATGY | 1 cut(s) | 527 |
| XhoI | CTCGAG | 1 cut(s) | 1145 |
| XmiI | GTMKAC | 1 cut(s) | 990 |
| XspI | CTAG | 2 cut(s) | 1073, 1612 |
| Zsp2I | ATGCAT | 1 cut(s) | 525 |