AT1G31970

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
11479763 .. 11482890
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31970.1

Sequence Viewer

Length: 1614 bp
ATGGCTGGACAAAAGCAAGAGCTTCCCGTCTCCGGCGAACCTTTAGCCGTCGAGAGTCCGATGACCAACAAGAAGAAGAAGAAAAGCAAGAAGAACAAACATACAGAGGAAAATCATGAAGTCGAAGAAGTGCCTCAAGAGGTCACTAATGGTGTAGAGGAAGAGTTGAGTAATAAAGAGAAGAAGAAGAAACGTAAGAGAGAGGAGAAAGAGTCTGAGAAGAATAAGAAGAAGGATGTCCCGGAGAAGAAGCTTGAAGCTGAGGATTTAGGAGAAGGAGAGAGTGAACAACAGAAGGTTGTTGTGACTGGGAAAGGTGTGGAAGAAGCAAAGTACGCAGCTTTGAAGACTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGATTGTTGTAAGACTTTCGAGAAGCCGTCTCCGATTCAGTCACATACGTGGCCGTTTTTGTTAGATGGGCGTGATCTTATCGGGATTGCGAAAACTGGGTCAGGTAAGACATTGGCTTTTGGGATTCCTGCGATTATGCATGTGTTGAAGAAAAATAAGAAGATTGGTGGAGGATCAAAGAAGGTTAATCCTACTTGTTTAGTTCTTTCTCCTACACGAGAATTGGCTGTTCAGATTTCTGATGTTTTGCGTGAAGCTGGAGAACCGTGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAGGGCCTCAAATAAGTGCAATTCGATCTGGAGTTGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGATTGAGTCTAATGTGCTTCGTCTCTCGGATGTTTCCTTTGTCGTATTGGATGAAGCAGATCGAATGCTTGATATGGGTTTCGAGGAACCTGTCCGGTTTATATTGAGTAACACAAATAAAGTTCGTCAAATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCCCAGGAATTCATGGATCCAAATCCAATCAAGGTGATCATAGGTTCTGTAGACTTAGCTGCCAACCACGACGTTATGCAAATCATTGAGGTCTTGGATGAACGTGCGCGTGATCAGCGTCTCATTGCATTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTATTTGCTTTATACAAGGTGGAAGCTGAACGTCTCGAGCGTTTTCTTCAGCAAAGAGGTTGGAAAGCTGTATCTATACACGGAAACAAAGCACAGAGCGAACGTACCAGGTCTTTATCATTGTTCAAAGAAGGATCCTGCCCGTTACTGGTGGCTACTGATGTTGCAGCAAGAGGGCTTGATATCCCGGACGTGGAAGTTGTGATAAACTACACTTTCCCTTTAACAACAGAGGATTATGTACACAGAATCGGGAGGACAGGAAGAGCGGGTAAAAAGGGCGTTGCACACACCTTCTTCACGCCACTGAACAAGGGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAGGAATCAAAATTGTATGGAGCTCATTTCAAAGAAATAGCTGCTGATGCTCCTAAAGCTACGAAGATCACATTCGATAATTCTGATGACGAAGACTAG

Protein Analysis

537

Amino Acids

59.6

Weight (kDa)

8.69

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 138 - 311 2.6e-47 DEAD/DEAH box helicase
Helicase_C PF00271 354 - 461 1.5e-31 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1379
AccI GTMKAC 1 cut(s) 990
AccII CGCG 1 cut(s) 1048
AciI CCGC 1 cut(s) 1379
AclWI GGATC 5 cut(s) 565, 950, 963, 1239, 1252
AcoI YGGCCR 1 cut(s) 434
AcsI RAATTY 2 cut(s) 364, 947
AcuI CTGAAG 1 cut(s) 1142
AfaI GTAC 4 cut(s) 335, 742, 1216, 1353
AfiI CCNNNNNNNGG 3 cut(s) 32, 1258, 1303
AgsI TTSAA 7 cut(s) 257, 346, 532, 661, 1237, 1492, 1546
AjiI CACGTC 1 cut(s) 1303
AjnI CCWGG 3 cut(s) 745, 942, 1217
AjuI GAANNNNNNNTTGG 2 cut(s) 1091, 1123
AleI CACNNNNGTG 1 cut(s) 430
Alw21I GWGCWC 1 cut(s) 1540
Alw26I GTCTC 6 cut(s) 34, 417, 753, 791, 1064, 1148
AlwI GGATC 5 cut(s) 565, 950, 963, 1239, 1252
Ama87I CYCGRG 1 cut(s) 1145
AoxI GGCC 4 cut(s) 434, 695, 917, 939
ApeKI GCWGC 4 cut(s) 338, 998, 1277, 1556
ApoI RAATTY 2 cut(s) 364, 947
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
AspLEI GCGC 1 cut(s) 1048
AspS9I GGNCC 2 cut(s) 695, 940
AsuC2I CCSGG 2 cut(s) 242, 1298
AsuHPI GGTGA 1 cut(s) 985
AvaI CYCGRG 1 cut(s) 1145
BamHI GGATCC 2 cut(s) 955, 1244
BanII GRGCYC 1 cut(s) 1540
BauI CACGAG 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 1540
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 4 cut(s) 350, 985, 1289, 1543
BccI CCATC 1 cut(s) 443
BceAI ACGGC 3 cut(s) 32, 394, 421
BciT130I CCWGG 3 cut(s) 747, 944, 1219
BclI TGATCA 2 cut(s) 975, 1051
BcnI CCSGG 2 cut(s) 242, 1298
BcoDI GTCTC 6 cut(s) 34, 417, 753, 791, 1064, 1148
BfaI CTAG 2 cut(s) 1073, 1612
BfmI CTRYAG 1 cut(s) 987
BisI GCNGC 4 cut(s) 339, 999, 1278, 1557
BlsI GCNGC 4 cut(s) 340, 1000, 1279, 1558
Bme1390I CCNGG 5 cut(s) 242, 747, 944, 1219, 1298
BmeT110I CYCGRG 1 cut(s) 1145
BmgBI CACGTC 1 cut(s) 1303
BmgT120I GGNCC 2 cut(s) 695, 940
BmiI GGNNCC 3 cut(s) 852, 957, 1246
BmrFI CCNGG 5 cut(s) 242, 747, 944, 1219, 1298
BmrI ACTGGG 2 cut(s) 318, 489
BmsI GCATC 1 cut(s) 1552
BmuI ACTGGG 2 cut(s) 318, 489
BpiI GAAGAC 1 cut(s) 353
BpmI CTGGAG 2 cut(s) 663, 741
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 120
BpuMI CCSGG 2 cut(s) 242, 1298
Bsa29I ATCGAT 1 cut(s) 665
BsaAI YACGTR 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 960
BsaJI CCNNGG 1 cut(s) 942
BsaWI WCCGGW 1 cut(s) 858
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 1428, 1458
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 1258, 1303
Bse1I ACTGG 3 cut(s) 313, 484, 1263
Bse3DI GCAATG 1 cut(s) 1062
Bse8I GATNNNNATC 1 cut(s) 960
BseBI CCWGG 3 cut(s) 747, 944, 1219
BseCI ATCGAT 1 cut(s) 665
BseDI CCNNGG 1 cut(s) 942
BseGI GGATG 5 cut(s) 241, 799, 820, 931, 1042
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 3 cut(s) 32, 1258, 1303
BseMI GCAATG 1 cut(s) 1062
BseMII CTCAG 2 cut(s) 207, 252
BseNI ACTGG 3 cut(s) 313, 484, 1263
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 4 cut(s) 350, 985, 1289, 1543
Bsh1236I CGCG 1 cut(s) 1048
BshFI GGCC 4 cut(s) 436, 697, 919, 941
BshVI ATCGAT 1 cut(s) 665
BsiHKAI GWGCWC 1 cut(s) 1540
BsiHKCI CYCGRG 1 cut(s) 1145
BsiSI CCGG 5 cut(s) 33, 242, 371, 859, 1298
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 3 cut(s) 32, 1258, 1303
BsmAI GTCTC 6 cut(s) 34, 417, 753, 791, 1064, 1148
BsmBI CGTCTC 5 cut(s) 34, 417, 791, 1064, 1148
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 4 cut(s) 436, 697, 919, 941
BsoBI CYCGRG 1 cut(s) 1145
Bsp1286I GDGCHC 1 cut(s) 1540
Bsp1407I TGTACA 1 cut(s) 1351
BspACI CCGC 1 cut(s) 1379
BspANI GGCC 4 cut(s) 436, 697, 919, 941
BspCNI CTCAG 2 cut(s) 208, 253
BspDI ATCGAT 1 cut(s) 665
BspFNI CGCG 1 cut(s) 1048
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 852, 957, 1246
BspPI GGATC 5 cut(s) 565, 950, 963, 1239, 1252
BspQI GCTCTTC 1 cut(s) 1369
BsrBI CCGCTC 1 cut(s) 1379
BsrDI GCAATG 1 cut(s) 1062
BsrGI TGTACA 1 cut(s) 1351
BsrI ACTGG 3 cut(s) 313, 484, 1263
BssECI CCNNGG 1 cut(s) 942
BssSI CACGAG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 3 cut(s) 747, 944, 1219
Bst4CI ACNGT 1 cut(s) 651
Bst6I CTCTTC 2 cut(s) 156, 1369
BstAUI TGTACA 1 cut(s) 1351
BstBAI YACGTR 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 1479
BstDEI CTNAG 4 cut(s) 216, 261, 994, 1454
BstF5I GGATG 5 cut(s) 241, 799, 820, 931, 1042
BstFNI CGCG 1 cut(s) 1048
BstHHI GCGC 1 cut(s) 1048
BstMAI GTCTC 6 cut(s) 34, 417, 753, 791, 1064, 1148
BstMWI GCNNNNNNNGC 4 cut(s) 335, 1054, 1562, 1571
BstNI CCWGG 3 cut(s) 747, 944, 1219
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 5 cut(s) 240, 745, 942, 1217, 1296
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 1 cut(s) 1048
BstV1I GCAGC 4 cut(s) 350, 985, 1289, 1543
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 2 cut(s) 955, 1244
BstYI RGATCY 2 cut(s) 955, 1244
Bsu15I ATCGAT 1 cut(s) 665
BsuRI GGCC 4 cut(s) 436, 697, 919, 941
BsuTUI ATCGAT 1 cut(s) 665
BtrI CACGTC 1 cut(s) 1303
BtsCI GGATG 5 cut(s) 241, 799, 820, 931, 1042
BtsIMutI CAGTG 2 cut(s) 913, 1415
Cac8I GCNNGC 1 cut(s) 1479
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 1048
Cfr13I GGNCC 2 cut(s) 695, 940
ClaI ATCGAT 1 cut(s) 665
CseI GACGC 1 cut(s) 1046
CsiI ACCWGGT 1 cut(s) 1217
Csp6I GTAC 4 cut(s) 334, 741, 1215, 1352
CviAII CATG 4 cut(s) 116, 524, 952, 1505
CviQI GTAC 4 cut(s) 334, 741, 1215, 1352
DdeI CTNAG 4 cut(s) 216, 261, 994, 1454
EaeI YGGCCR 1 cut(s) 434
Eam1104I CTCTTC 2 cut(s) 156, 1369
EarI CTCTTC 2 cut(s) 156, 1369
Ecl136II GAGCTC 1 cut(s) 1538
Eco24I GRGCYC 1 cut(s) 1540
Eco32I GATATC 1 cut(s) 1294
Eco53kI GAGCTC 1 cut(s) 1538
Eco57I CTGAAG 1 cut(s) 1142
Eco88I CYCGRG 1 cut(s) 1145
EcoICRI GAGCTC 1 cut(s) 1538
EcoO109I RGGNCCY 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 947
EcoRII CCWGG 3 cut(s) 745, 942, 1217
EcoRV GATATC 1 cut(s) 1294
EcoT22I ATGCAT 1 cut(s) 525
EcoT38I GRGCYC 1 cut(s) 1540
Esp3I CGTCTC 5 cut(s) 34, 417, 791, 1064, 1148
FaeI CATG 4 cut(s) 119, 527, 955, 1508
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 115, 523, 951, 1504
FauI CCCGC 1 cut(s) 1372
FbaI TGATCA 2 cut(s) 975, 1051
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 4 cut(s) 339, 999, 1278, 1557
FokI GGATG 5 cut(s) 248, 806, 827, 938, 1049
FriOI GRGCYC 1 cut(s) 1540
Fsp4HI GCNGC 4 cut(s) 339, 999, 1278, 1557
FspBI CTAG 2 cut(s) 1073, 1612
GlaI GCGC 1 cut(s) 1047
GluI GCNGC 4 cut(s) 339, 999, 1278, 1557
GsuI CTGGAG 2 cut(s) 663, 741
HaeIII GGCC 4 cut(s) 436, 697, 919, 941
HapII CCGG 5 cut(s) 33, 242, 371, 859, 1298
HgaI GACGC 1 cut(s) 1046
HhaI GCGC 1 cut(s) 1048
Hin1II CATG 4 cut(s) 119, 527, 955, 1508
Hin6I GCGC 1 cut(s) 1046
HinP1I GCGC 1 cut(s) 1046
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 8 cut(s) 55, 212, 359, 418, 508, 770, 1359, 1520
HpaII CCGG 5 cut(s) 33, 242, 371, 859, 1298
HphI GGTGA 1 cut(s) 985
Hpy166II GTNNAC 4 cut(s) 287, 931, 991, 1354
Hpy188I TCNGA 7 cut(s) 60, 217, 417, 618, 625, 793, 1600
Hpy188III TCNNGA 8 cut(s) 52, 116, 137, 403, 466, 720, 1145, 1363
Hpy8I GTNNAC 4 cut(s) 287, 931, 991, 1354
Hpy99I CGWCG 2 cut(s) 53, 1013
HpyAV CCTTC 6 cut(s) 226, 269, 289, 559, 1235, 1414
HpyCH4III ACNGT 1 cut(s) 651
HpyCH4IV ACGT 7 cut(s) 193, 431, 1011, 1042, 1141, 1213, 1302
HpyCH4V TGCA 8 cut(s) 523, 710, 911, 1018, 1067, 1277, 1397, 1433
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 1054, 1562, 1571
HpyF3I CTNAG 4 cut(s) 216, 261, 994, 1454
HpySE526I ACGT 7 cut(s) 193, 431, 1011, 1042, 1141, 1213, 1302
Hsp92II CATG 4 cut(s) 119, 527, 955, 1508
HspAI GCGC 1 cut(s) 1046
Ksp22I TGATCA 2 cut(s) 975, 1051
LguI GCTCTTC 1 cut(s) 1369
LmnI GCTCC 2 cut(s) 1535, 1570
Lsp1109I GCAGC 4 cut(s) 350, 985, 1289, 1543
LweI GCATC 1 cut(s) 1552
MabI ACCWGGT 1 cut(s) 1217
MaeI CTAG 2 cut(s) 1073, 1612
MaeII ACGT 7 cut(s) 193, 431, 1011, 1042, 1141, 1213, 1302
MaeIII GTNAC 5 cut(s) 142, 304, 423, 872, 1254
MbiI CCGCTC 1 cut(s) 1379
MflI RGATCY 2 cut(s) 955, 1244
MhlI GDGCHC 1 cut(s) 1540
MluCI AATT 7 cut(s) 364, 605, 711, 935, 947, 1526, 1594
MlyI GAGTC 3 cut(s) 64, 221, 779
MmeI TCCRAC 1 cut(s) 1151
Mph1103I ATGCAT 1 cut(s) 525
MseI TTAA 2 cut(s) 570, 1334
MslI CAYNNNNRTG 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 1481
MspI CCGG 5 cut(s) 33, 242, 371, 859, 1298
MspR9I CCNGG 5 cut(s) 242, 747, 944, 1219, 1298
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 3 cut(s) 747, 944, 1219
MvnI CGCG 1 cut(s) 1048
MwoI GCNNNNNNNGC 4 cut(s) 335, 1054, 1562, 1571
NciI CCSGG 2 cut(s) 242, 1298
NlaIII CATG 4 cut(s) 119, 527, 955, 1508
NlaIV GGNNCC 3 cut(s) 852, 957, 1246
NmuCI GTSAC 3 cut(s) 142, 304, 423
NsiI ATGCAT 1 cut(s) 525
NspI RCATGY 1 cut(s) 527
OliI CACNNNNGTG 1 cut(s) 430
PaeR7I CTCGAG 1 cut(s) 1145
PagI TCATGA 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 1369
PcsI WCGNNNNNNNCGW 1 cut(s) 1147
PctI GAATGC 1 cut(s) 834
PfeI GAWTC 5 cut(s) 359, 418, 508, 1359, 1520
PfoI TCCNGGA 2 cut(s) 240, 1296
PkrI GCNGC 4 cut(s) 340, 1000, 1279, 1558
PleI GAGTC 3 cut(s) 63, 220, 778
PpsI GAGTC 3 cut(s) 63, 220, 778
Ppu21I YACGTR 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 1540
Psp6I CCWGG 3 cut(s) 745, 942, 1217
PspGI CCWGG 3 cut(s) 745, 942, 1217
PspN4I GGNNCC 3 cut(s) 852, 957, 1246
PspPI GGNCC 2 cut(s) 695, 940
PsuI RGATCY 2 cut(s) 955, 1244
PvuII CAGCTG 1 cut(s) 1481
RsaI GTAC 4 cut(s) 335, 742, 1216, 1353
RsaNI GTAC 4 cut(s) 334, 741, 1215, 1352
RseI CAYNNNNRTG 1 cut(s) 430
SacI GAGCTC 1 cut(s) 1540
SapI GCTCTTC 1 cut(s) 1369
SaqAI TTAA 2 cut(s) 570, 1334
SatI GCNGC 4 cut(s) 339, 999, 1278, 1557
Sau96I GGNCC 2 cut(s) 695, 940
SchI GAGTC 3 cut(s) 64, 221, 779
ScrFI CCNGG 5 cut(s) 242, 747, 944, 1219, 1298
SduI GDGCHC 1 cut(s) 1540
SexAI ACCWGGT 1 cut(s) 1217
SfaNI GCATC 1 cut(s) 1552
SfcI CTRYAG 1 cut(s) 987
Sfr274I CTCGAG 1 cut(s) 1145
SlaI CTCGAG 1 cut(s) 1145
SmiMI CAYNNNNRTG 1 cut(s) 430
SmlI CTYRAG 2 cut(s) 135, 1145
SmoI CTYRAG 2 cut(s) 135, 1145
Sse9I AATT 7 cut(s) 364, 605, 711, 935, 947, 1526, 1594
SsiI CCGC 1 cut(s) 1379
SspMI CTAG 2 cut(s) 1073, 1612
SstI GAGCTC 1 cut(s) 1540
StyD4I CCNGG 5 cut(s) 240, 745, 942, 1217, 1296
TaaI ACNGT 1 cut(s) 651
TaiI ACGT 7 cut(s) 196, 434, 1014, 1045, 1144, 1216, 1305
TasI AATT 7 cut(s) 364, 605, 711, 935, 947, 1526, 1594
TatI WGTACW 1 cut(s) 1351
TfiI GAWTC 5 cut(s) 359, 418, 508, 1359, 1520
Tru1I TTAA 2 cut(s) 570, 1334
Tru9I TTAA 2 cut(s) 570, 1334
TscAI CASTG 2 cut(s) 913, 1422
TseFI GTSAC 3 cut(s) 142, 304, 423
TseI GCWGC 4 cut(s) 338, 998, 1277, 1556
Tsp45I GTSAC 3 cut(s) 142, 304, 423
TspDTI ATGAA 4 cut(s) 132, 831, 940, 1053
TspGWI ACGGA 1 cut(s) 1206
TspRI CASTG 2 cut(s) 913, 1422
XapI RAATTY 2 cut(s) 364, 947
XceI RCATGY 1 cut(s) 527
XhoI CTCGAG 1 cut(s) 1145
XmiI GTMKAC 1 cut(s) 990
XspI CTAG 2 cut(s) 1073, 1612
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.