Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010049

Physical Location & Seq

Genomic Coordinates Reverse (-)

51352744 .. 51353885

Gene Structure 1142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGTCGGAAGCTCAAAGACCCCTCAACTCTCGGCGACCCGAAGCCCGGAAGCCACGAACCACCGCGAAGCCAAAGCCGAGAAGAAGAAGATGACCAACTCGGTCCTCCTAAGCGAAAGTTGGAGGAAGAGATTTCAGAATCTAAAAAGAAGAAGAAGAAGCACAAGAAATCGAAAGAGAGCGTAAACGGTGAGGAGGAGCCGAAGGGAAATGGAGAAGTGGAAGAGAGTAATTCCACCGATGCGGTTGTGATGGTTACCGGGAAAGATGCTAATGAGGCCAAATACAAGCCGTTGGATTCGTTCGCGGAGTCGAAGCTTCCCGGTGAGGTCTTACGGTCTTGTGCGAATTTCCGTAAACCGTCTCCGATTCGGTCCCGGCGTGGCCTTTCTTGTTGGACGGTCGTGATTTTATTGGAATTGCGAAAACCGGGTCGGGGAGCTAGCTCAACAAATTTCGATGTACCGGTTGAGGCCGGGAAATCTTGTGGTGTGGAATCGTTTGTTTGTATGGAGGAACATCTAAAGGACCCCAAATATCTTCTCGAAATCCGGAAGTATCTTTTGCGGTCCTTGATGAAGCGAGATAGAATGCTTGACATGGGATTTGAACCCGAAGTCCGCTATATACTAGGACAGACATGCTCGGCTCGCCAAATGGATTTAGCCGCCAACCATGATGTCCTGCGTATAGTCGAGGTCTTGGATGATCGATCTCGCGATGGGCGTTTGGTTGCTTTGCTAGAAAAATACCACAAATTCAAAGGAAACAGAGTTTTGGTGTTTGTCTTGTACAAAATGGAAGCTACTTGTGTTGAAAATATGCAGCAAAACAATGAGAAAGATTCTCGAAACATGGAAGCTTGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

290

Amino Acids

32.9

Weight (kDa)

8.69

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31970
fragaria_vesca	FvH4_5g23490
malus_domestica	MD00G1068700.v1.1 MD06G1023800.v1.1
prunus_persica	Prupe.5G024900_v2.0.a1
pyrus_communis	pycom16g25290
rosa_chinensis	RchiOBHm_Chr7g0212761
rosa_laevigata	RLG00000002870
rosa_multiflora	Rmu_sc0000394.1_g000033 Rmu_sc0008336.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246570 Rroxscaffold_3G00250790 Rroxscaffold_4G00321740 Rroxscaffold_4G00321750
rosa_rugosa	Rorug07G0136500
rosa_samantha	Rh7BG263500 Rh7CG287100
rosa_wichuraiana	Rw7G023130 Rw7G023160 Rw7G023230 Rw7G023270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	67, 308, 720
AccIII	TCCGGA	1 cut(s)	552
AciI	CCGC	6 cut(s)	65, 245, 308, 568, 622, 669
AcsI	RAATTY	3 cut(s)	349, 454, 758
AfaI	GTAC	2 cut(s)	465, 794
AfiI	CCNNNNNNNGG	2 cut(s)	47, 437
AgeI	ACCGGT	1 cut(s)	466
AgsI	TTSAA	3 cut(s)	611, 763, 818
AloI	GAACNNNNNNTCC	2 cut(s)	603, 635
AluBI	AGCT	6 cut(s)	13, 319, 443, 447, 806, 863
AluI	AGCT	6 cut(s)	13, 319, 443, 447, 806, 863
Alw26I	GTCTC	1 cut(s)	369
Aor13HI	TCCGGA	1 cut(s)	552
AoxI	GGCC	3 cut(s)	279, 385, 474
ApeKI	GCWGC	1 cut(s)	826
ApoI	RAATTY	3 cut(s)	349, 454, 758
ArsI	GACNNNNNNTTYG	4 cut(s)	418, 450, 590, 622
AsiGI	ACCGGT	1 cut(s)	466
AspS9I	GGNCC	4 cut(s)	104, 375, 529, 570
AsuC2I	CCSGG	6 cut(s)	48, 262, 324, 379, 432, 478
AsuHPI	GGTGA	2 cut(s)	203, 338
AsuNHI	GCTAGC	1 cut(s)	443
AvaII	GGWCC	4 cut(s)	104, 375, 529, 570
BbvI	GCAGC	1 cut(s)	838
BccI	CCATC	2 cut(s)	247, 716
BceAI	ACGGC	1 cut(s)	277
BcnI	CCSGG	6 cut(s)	48, 262, 324, 379, 432, 478
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	3 cut(s)	444, 632, 743
BisI	GCNGC	2 cut(s)	669, 827
BlsI	GCNGC	2 cut(s)	670, 828
Bme1390I	CCNGG	6 cut(s)	48, 262, 324, 379, 432, 478
Bme18I	GGWCC	4 cut(s)	104, 375, 529, 570
BmgT120I	GGNCC	4 cut(s)	104, 375, 529, 570
BmiI	GGNNCC	3 cut(s)	201, 377, 531
BmrFI	CCNGG	6 cut(s)	48, 262, 324, 379, 432, 478
BmsI	GCATC	2 cut(s)	232, 259
BmtI	GCTAGC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	111
BpuMI	CCSGG	6 cut(s)	48, 262, 324, 379, 432, 478
Bsa29I	ATCGAT	1 cut(s)	712
BsaWI	WCCGGW	2 cut(s)	466, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 437
Bse118I	RCCGGY	1 cut(s)	466
BseAI	TCCGGA	1 cut(s)	552
BseCI	ATCGAT	1 cut(s)	712
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	2 cut(s)	47, 437
BseRI	GAGGAG	2 cut(s)	209, 212
BseXI	GCAGC	1 cut(s)	838
Bsh1236I	CGCG	3 cut(s)	67, 308, 720
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	281, 387, 476
BshTI	ACCGGT	1 cut(s)	466
BshVI	ATCGAT	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	405
BsiSI	CCGG	8 cut(s)	48, 261, 324, 379, 431, 467, 477, 553
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	47, 437
BsmAI	GTCTC	1 cut(s)	369
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	3 cut(s)	281, 387, 476
Bsp13I	TCCGGA	1 cut(s)	552
Bsp1407I	TGTACA	1 cut(s)	792
Bsp143I	GATC	2 cut(s)	709, 713
Bsp68I	TCGCGA	1 cut(s)	720
BspACI	CCGC	6 cut(s)	65, 245, 308, 568, 622, 669
BspANI	GGCC	3 cut(s)	281, 387, 476
BspDI	ATCGAT	1 cut(s)	712
BspEI	TCCGGA	1 cut(s)	552
BspFNI	CGCG	3 cut(s)	67, 308, 720
BspLI	GGNNCC	3 cut(s)	201, 377, 531
BspOI	GCTAGC	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	792
BssAI	RCCGGY	1 cut(s)	466
BssMI	GATC	2 cut(s)	709, 713
Bst4CI	ACNGT	4 cut(s)	191, 339, 363, 403
Bst6I	CTCTTC	2 cut(s)	123, 219
BstAUI	TGTACA	1 cut(s)	792
BstC8I	GCNNGC	2 cut(s)	445, 652
BstDEI	CTNAG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	3 cut(s)	67, 308, 720
BstKTI	GATC	2 cut(s)	712, 716
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	2 cut(s)	709, 713
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 651
BstNSI	RCATGY	1 cut(s)	645
BstPI	GGTNACC	1 cut(s)	256
BstSCI	CCNGG	6 cut(s)	46, 260, 322, 377, 430, 476
BstUI	CGCG	3 cut(s)	67, 308, 720
BstV1I	GCAGC	1 cut(s)	838
Bsu15I	ATCGAT	1 cut(s)	712
BsuRI	GGCC	3 cut(s)	281, 387, 476
BsuTUI	ATCGAT	1 cut(s)	712
BtgZI	GCGATG	1 cut(s)	735
BtsCI	GGATG	1 cut(s)	712
BtuMI	TCGCGA	1 cut(s)	720
Cac8I	GCNNGC	2 cut(s)	445, 652
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	4 cut(s)	104, 375, 529, 570
ClaI	ATCGAT	1 cut(s)	712
Csp6I	GTAC	2 cut(s)	464, 793
CspAI	ACCGGT	1 cut(s)	466
CviAII	CATG	4 cut(s)	601, 642, 677, 856
CviQI	GTAC	2 cut(s)	464, 793
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	711, 715
DpnII	GATC	2 cut(s)	709, 713
Eam1104I	CTCTTC	2 cut(s)	123, 219
EarI	CTCTTC	2 cut(s)	123, 219
Eco47I	GGWCC	4 cut(s)	104, 375, 529, 570
Eco91I	GGTNACC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	4 cut(s)	604, 645, 680, 859
FaiI	YATR	9 cut(s)	512, 602, 627, 629, 643, 678, 692, 824, 857
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	4 cut(s)	600, 641, 676, 855
Fnu4HI	GCNGC	2 cut(s)	669, 827
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	2 cut(s)	669, 827
FspBI	CTAG	3 cut(s)	444, 632, 743
GluI	GCNGC	2 cut(s)	669, 827
HaeIII	GGCC	3 cut(s)	281, 387, 476
HapII	CCGG	8 cut(s)	48, 261, 324, 379, 431, 467, 477, 553
Hin1II	CATG	4 cut(s)	604, 645, 680, 859
HindIII	AAGCTT	2 cut(s)	317, 861
HinfI	GANTC	6 cut(s)	140, 299, 311, 370, 497, 845
HpaII	CCGG	8 cut(s)	48, 261, 324, 379, 431, 467, 477, 553
HphI	GGTGA	2 cut(s)	203, 338
Hpy166II	GTNNAC	2 cut(s)	187, 359
Hpy188I	TCNGA	3 cut(s)	9, 139, 369
Hpy188III	TCNNGA	5 cut(s)	406, 545, 553, 719, 849
Hpy8I	GTNNAC	2 cut(s)	187, 359
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	4 cut(s)	191, 339, 363, 403
HpyCH4V	TGCA	1 cut(s)	826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 651
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	604, 645, 680, 859
Kpn2I	TCCGGA	1 cut(s)	552
Kzo9I	GATC	2 cut(s)	709, 713
LmnI	GCTCC	2 cut(s)	199, 440
LpnPI	CCDG	9 cut(s)	61, 274, 337, 392, 444, 480, 490, 566, 698
Lsp1109I	GCAGC	1 cut(s)	838
LweI	GCATC	2 cut(s)	232, 259
MaeI	CTAG	3 cut(s)	444, 632, 743
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	711, 715
MboI	GATC	2 cut(s)	709, 713
MboII	GAAGA	9 cut(s)	95, 98, 101, 140, 163, 166, 169, 236, 533
MluCI	AATT	5 cut(s)	232, 349, 419, 454, 758
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	3 cut(s)	102, 276, 377
MroI	TCCGGA	1 cut(s)	552
MspI	CCGG	8 cut(s)	48, 261, 324, 379, 431, 467, 477, 553
MspR9I	CCNGG	6 cut(s)	48, 262, 324, 379, 432, 478
Mva1269I	GAATGC	1 cut(s)	597
MvnI	CGCG	3 cut(s)	67, 308, 720
MwoI	GCNNNNNNNGC	2 cut(s)	278, 651
NciI	CCSGG	6 cut(s)	48, 262, 324, 379, 432, 478
NdeII	GATC	2 cut(s)	709, 713
NheI	GCTAGC	1 cut(s)	443
NlaIII	CATG	4 cut(s)	604, 645, 680, 859
NlaIV	GGNNCC	3 cut(s)	201, 377, 531
NmeAIII	GCCGAG	3 cut(s)	12, 104, 626
NruI	TCGCGA	1 cut(s)	720
NspI	RCATGY	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	2 cut(s)	379, 724
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	5 cut(s)	140, 299, 370, 497, 845
PinAI	ACCGGT	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	670, 828
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	529
PspEI	GGTNACC	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	201, 377, 531
PspPI	GGNCC	4 cut(s)	104, 375, 529, 570
PspPPI	RGGWCCY	1 cut(s)	529
RruI	TCGCGA	1 cut(s)	720
RsaI	GTAC	2 cut(s)	465, 794
RsaNI	GTAC	2 cut(s)	464, 793
SatI	GCNGC	2 cut(s)	669, 827
Sau3AI	GATC	2 cut(s)	709, 713
Sau96I	GGNCC	4 cut(s)	104, 375, 529, 570
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	6 cut(s)	48, 262, 324, 379, 432, 478
SetI	ASST	8 cut(s)	15, 321, 333, 445, 449, 702, 808, 865
SfaNI	GCATC	2 cut(s)	232, 259
SinI	GGWCC	4 cut(s)	104, 375, 529, 570
Sse9I	AATT	5 cut(s)	232, 349, 419, 454, 758
SsiI	CCGC	6 cut(s)	65, 245, 308, 568, 622, 669
SspMI	CTAG	3 cut(s)	444, 632, 743
StyD4I	CCNGG	6 cut(s)	46, 260, 322, 377, 430, 476
TaaI	ACNGT	4 cut(s)	191, 339, 363, 403
TaqI	TCGA	7 cut(s)	173, 314, 459, 546, 696, 712, 850
TaqII	GACCGA	2 cut(s)	92, 363
TasI	AATT	5 cut(s)	232, 349, 419, 454, 758
TatI	WGTACW	1 cut(s)	792
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	5 cut(s)	140, 299, 370, 497, 845
TseI	GCWGC	1 cut(s)	826
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	1 cut(s)	344
VpaK11BI	GGWCC	4 cut(s)	104, 375, 529, 570
XapI	RAATTY	3 cut(s)	349, 454, 758
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	3 cut(s)	444, 632, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.