Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008336.1

Orthogroup ID

OG0010049

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5408

Gene Structure 5408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008336.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 989 bp

atgtactggttgaggctgggaaatcttgtggtgtggaatcagtttgtttgtatggaggaacatctaaaggacctcaaatatcttctctgaaatctggtgtggacattgttattggaacacctggtcgtttgaaggatctcattgaaatgggtttgtgttgccttaaggaagtatcttttgcggtccttgatgaagcagatagaatgcttgacatgggatttgaacctgaagtccgctatatactgggacagacatgctcggctcgccaaatggtaatgttcagcgcaacttggcctccatcagttcatcagttagctcaggagttcatggatcctaatccagttaaggtggttgttggttcagaggatttagctgccaaccatgatgtcctgcagatagtcgaggtcttggatgatcgatctcgcgatgggcgtttggttgctttgctagaaaaataccacaaatccaaaggaaacagagttttggtgtttgtcttgtacaaaatggaagctactcgtgttgaaaatatgctgcaaagagggggttggaaggtctgttctatacatggtgataaagcacaaaatcagcgcacacaggcactatctctatttaagcagggaagctgtcccttgatgattgctactgatgtggctgctcggggattagatatcccagatgttgaggtagtgattaactatagttttccactcactaccgaggattatgtccacagaattgggcgtactggacgggctggtaagaagggtgtcgctcatacctttttcactcatcacaacaagggacttgctggggagctggtcaatgttctcaaagaagctgggcaaaatgtgccagctgacttgttgaagtttggcactcatgtaaagaaaaaggaatccaaactttatggggctcacttcagagaaatttctgccgatgctccaaaggctaaaaagatcacattcgctgactctgatgatgaagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

328

Amino Acids

36.0

Weight (kDa)

6.86

Isoelectric Point (pI)

25.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31970
fragaria_vesca	FvH4_5g23490
malus_domestica	MD00G1068700.v1.1 MD06G1023800.v1.1
prunus_persica	Prupe.5G024900_v2.0.a1
pyrus_communis	pycom16g25290
rosa_chinensis	RchiOBHm_Chr7g0212761
rosa_laevigata	RLG00000002870
rosa_multiflora	Rmu_sc0000394.1_g000033 Rmu_sc0008336.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246570 Rroxscaffold_3G00250790 Rroxscaffold_4G00321740 Rroxscaffold_4G00321750
rosa_rugosa	Rorug07G0136500
rosa_samantha	Rh7BG263500 Rh7CG287100
rosa_wichuraiana	Rw7G023130 Rw7G023160 Rw7G023230 Rw7G023270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	425
AciI	CCGC	2 cut(s)	181, 234
AclWI	GGATC	3 cut(s)	143, 325, 338
AcsI	RAATTY	1 cut(s)	926
AcuI	CTGAAG	2 cut(s)	248, 903
AfaI	GTAC	3 cut(s)	5, 499, 744
AflII	CTTAAG	1 cut(s)	163
AgsI	TTSAA	5 cut(s)	132, 145, 223, 523, 867
AjnI	CCWGG	1 cut(s)	120
AloI	GAACNNNNNNTCC	4 cut(s)	215, 247, 540, 572
AluBI	AGCT	7 cut(s)	316, 373, 511, 623, 816, 838, 856
AluI	AGCT	7 cut(s)	316, 373, 511, 623, 816, 838, 856
AlwI	GGATC	3 cut(s)	143, 325, 338
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	3 cut(s)	373, 531, 652
ApoI	RAATTY	1 cut(s)	926
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspLEI	GCGC	2 cut(s)	286, 590
AspS9I	GGNCC	2 cut(s)	70, 183
AsuHPI	GGTGA	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	70, 183
BamHI	GGATCC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	915
BauI	CACGAG	1 cut(s)	515
BbvI	GCAGC	3 cut(s)	360, 518, 639
BccI	CCATC	2 cut(s)	306, 421
BciT130I	CCWGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	448
BfmI	CTRYAG	2 cut(s)	391, 696
BfrI	CTTAAG	1 cut(s)	163
BisI	GCNGC	3 cut(s)	374, 532, 653
BlsI	GCNGC	3 cut(s)	375, 533, 654
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	2 cut(s)	70, 183
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	70, 183
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	927
BmuI	ACTGGG	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	716
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bse1I	ACTGG	4 cut(s)	11, 248, 340, 750
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	716
BseGI	GGATG	1 cut(s)	417
BseJI	GATNNNNATC	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	4 cut(s)	11, 248, 340, 750
BseXI	GCAGC	3 cut(s)	360, 518, 639
BseYI	CCCAGC	3 cut(s)	16, 808, 838
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	656
BslFI	GGGAC	3 cut(s)	260, 611, 815
BsmFI	GGGAC	3 cut(s)	260, 611, 815
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	5 cut(s)	135, 330, 414, 418, 956
Bsp68I	TCGCGA	1 cut(s)	425
BspACI	CCGC	2 cut(s)	181, 234
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	330
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	332
BspMAI	CTGCAG	1 cut(s)	395
BspPI	GGATC	3 cut(s)	143, 325, 338
BspTI	CTTAAG	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	4 cut(s)	11, 248, 340, 750
BssECI	CCNNGG	1 cut(s)	716
BssMI	GATC	5 cut(s)	135, 330, 414, 418, 956
BssSI	CACGAG	1 cut(s)	515
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	849
BstAUI	TGTACA	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	264, 854
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	417
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	2 cut(s)	286, 590
BstKTI	GATC	5 cut(s)	138, 333, 417, 421, 959
BstMBI	GATC	5 cut(s)	135, 330, 414, 418, 956
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 849, 946
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	391, 696
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	3 cut(s)	360, 518, 639
BstX2I	RGATCY	2 cut(s)	135, 330
BstXI	CCANNNNNNTGG	1 cut(s)	736
BstYI	RGATCY	2 cut(s)	135, 330
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	417
BtuMI	TCGCGA	1 cut(s)	425
Cac8I	GCNNGC	2 cut(s)	264, 854
CfoI	GCGC	2 cut(s)	286, 590
Cfr13I	GGNCC	2 cut(s)	70, 183
ClaI	ATCGAT	1 cut(s)	417
CsiI	ACCWGGT	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	4, 498, 743
CviAII	CATG	6 cut(s)	213, 254, 327, 382, 565, 880
CviQI	GTAC	3 cut(s)	4, 498, 743
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	5 cut(s)	137, 332, 416, 420, 958
DpnII	GATC	5 cut(s)	135, 330, 414, 418, 956
Eco24I	GRGCYC	1 cut(s)	915
Eco32I	GATATC	1 cut(s)	669
Eco47I	GGWCC	2 cut(s)	70, 183
Eco57I	CTGAAG	2 cut(s)	248, 903
Eco88I	CYCGRG	1 cut(s)	656
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	915
FaeI	CATG	6 cut(s)	216, 257, 330, 385, 568, 883
FaqI	GGGAC	3 cut(s)	260, 611, 815
FatI	CATG	6 cut(s)	212, 253, 326, 381, 564, 879
Fnu4HI	GCNGC	3 cut(s)	374, 532, 653
FokI	GGATG	1 cut(s)	424
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	3 cut(s)	374, 532, 653
FspBI	CTAG	1 cut(s)	448
GlaI	GCGC	2 cut(s)	285, 589
GluI	GCNGC	3 cut(s)	374, 532, 653
GsaI	CCCAGC	3 cut(s)	20, 812, 842
HaeIII	GGCC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	286, 590
Hin1II	CATG	6 cut(s)	216, 257, 330, 385, 568, 883
Hin6I	GCGC	2 cut(s)	284, 588
HinP1I	GCGC	2 cut(s)	284, 588
HinfI	GANTC	3 cut(s)	37, 895, 970
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	102, 729
Hpy188I	TCNGA	4 cut(s)	89, 363, 922, 975
Hpy188III	TCNNGA	2 cut(s)	319, 424
Hpy8I	GTNNAC	2 cut(s)	102, 729
HpyAV	CCTTC	3 cut(s)	126, 543, 756
HpyCH4V	TGCA	2 cut(s)	393, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 849, 946
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	6 cut(s)	216, 257, 330, 385, 568, 883
HspAI	GCGC	2 cut(s)	284, 588
Kzo9I	GATC	5 cut(s)	135, 330, 414, 418, 956
LmnI	GCTCC	2 cut(s)	813, 945
Lsp1109I	GCAGC	3 cut(s)	360, 518, 639
LweI	GCATC	1 cut(s)	927
MabI	ACCWGGT	1 cut(s)	120
MaeI	CTAG	1 cut(s)	448
MalI	GATC	5 cut(s)	137, 332, 416, 420, 958
MboI	GATC	5 cut(s)	135, 330, 414, 418, 956
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	2 cut(s)	135, 330
MhlI	GDGCHC	1 cut(s)	915
MluCI	AATT	2 cut(s)	734, 926
MlyI	GAGTC	1 cut(s)	964
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	9 cut(s)	6, 49, 83, 305, 357, 396, 532, 675, 711
MseI	TTAA	4 cut(s)	164, 344, 611, 692
MslI	CAYNNNNRTG	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	856
MspCI	CTTAAG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	263, 849, 946
NdeII	GATC	5 cut(s)	135, 330, 414, 418, 956
NlaIII	CATG	6 cut(s)	216, 257, 330, 385, 568, 883
NlaIV	GGNNCC	1 cut(s)	332
NmeAIII	GCCGAG	1 cut(s)	238
NruI	TCGCGA	1 cut(s)	425
NspI	RCATGY	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	37, 895
PkrI	GCNGC	3 cut(s)	375, 533, 654
PleI	GAGTC	1 cut(s)	964
PpsI	GAGTC	1 cut(s)	964
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	3 cut(s)	16, 808, 838
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	2 cut(s)	70, 183
PspPPI	RGGWCCY	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	395
PsuI	RGATCY	2 cut(s)	135, 330
PvuII	CAGCTG	1 cut(s)	856
RruI	TCGCGA	1 cut(s)	425
RsaI	GTAC	3 cut(s)	5, 499, 744
RsaNI	GTAC	3 cut(s)	4, 498, 743
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	4 cut(s)	164, 344, 611, 692
SatI	GCNGC	3 cut(s)	374, 532, 653
Sau3AI	GATC	5 cut(s)	135, 330, 414, 418, 956
Sau96I	GGNCC	2 cut(s)	70, 183
SchI	GAGTC	1 cut(s)	964
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	915
SexAI	ACCWGGT	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	927
SfcI	CTRYAG	2 cut(s)	391, 696
SinI	GGWCC	2 cut(s)	70, 183
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	734, 926
SsiI	CCGC	2 cut(s)	181, 234
SspMI	CTAG	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	120
TaqI	TCGA	2 cut(s)	401, 417
TasI	AATT	2 cut(s)	734, 926
TatI	WGTACW	2 cut(s)	3, 497
TfiI	GAWTC	2 cut(s)	37, 895
Tru1I	TTAA	4 cut(s)	164, 344, 611, 692
Tru9I	TTAA	4 cut(s)	164, 344, 611, 692
TseI	GCWGC	3 cut(s)	373, 531, 652
TspDTI	ATGAA	3 cut(s)	206, 295, 315
Vha464I	CTTAAG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	70, 183
XapI	RAATTY	1 cut(s)	926
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.