Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010049

Physical Location & Seq

Genomic Coordinates Reverse (-)

27697788 .. 27703757

Gene Structure 5970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G023130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGTTACTGGGAAAGATGCTAATGAAGCCAAATATAAGCCGTTGGATTCGTTCGCGGAGTCGAAGCTTCCCAGTGAGGTCTTACAGTGCTGTGTGAATTTCCAGAAACCGTCTCCGATTCAGTCCCGGGCGTGGCCTTTCTTGTTGGACGGTCGTGATTTTATCGGGATTGCGAAAACTGGGTCGGGTAAGACTTTGGCGTTTGGGATACCAGCTATTAATCAAGTGTTGAATAAGAGGAATGGTAAGTTTTCGAGGGGGAGATATCCTCTTTGTCTTGTTCTCGCACCTACAAGGGAGCTAGCTCAGCAAATTTCAGATGTACTGGTTGAGGCTGGGAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGAGGAACATCTAAAGGACCTCAAATATCTTCTCTGAAATCTGGTGTGGACATCGTTATTGGAGCACCTGGTCGTTTGAAGGATCTCATTGAAATGGGTTTGTGTTGCCTTCAGGAAGTATCTTTTGCGGTCCTTGATGAAGCAGATAGAATGCTTGACATGGGATTTGAACCTGAAGTCCGCTACATACTGGGACAGACATGCTCGGCTCGCCAAATGGTAATGTTCAGTGCGACATGGCCTCCATCAGTTCATCAGTTAGCTCAGGAGTTCATGGATCCTAATCCAGTTAAGGTAGTTGTTGGTTCAGAGGATTTAGCTGCCAACCATGATGTCTTGCAGATAGTCGAGGTCTTGGATGATCGATCTCGTGATGGGCGTTTGGTTGCTTTGCTTGAAAAGTATCACAAATCTAAAGGGAATAGAGTTTTGGTTTTTGTCTTGTACAAAATGGAAGCTACTCGTGTTGAGAATATGCTACAACGAGGGGGTTGGAAGGTCTGTTCTATACATGGAGATAAAGCACAAAATCAGCGCACACAGGCACTATCTCTATTTAAGCAGGGAAGCTGTCCCTTGATGATAGCTACTGATGTGGCTGCTCGAGGATTGGATATCCCAGATGTTGAGGTAGTGATTAACTATAGTTTTCCACTCACTACTGAGGATTACGTCCACAGAATTGGGCGCACTGGACGGGCTGGTAAGAAGGGTGTCGCTCATACCTTTTTCACACATCACAACAAGGGACTTGCTGGGGAGCTGGTCAATGTTCTCAGAGAAGCTGGGCAAAATGTGCCAGCTGACTTGTTGAAATTTGGCACTCATGTAAAGAAAAAGGAGTCCAAACTTTATGGGGCTCACTTCAGAGAAATTTCTGCCGATGCTCCAAAGGCTAAAAAGATCACATTCGCTGACTCTGATGATGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

435

Amino Acids

47.75

Weight (kDa)

8.41

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	38 - 210	4e-46	DEAD/DEAH box helicase
Helicase_C	PF00271	255 - 359	1.5e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31970
fragaria_vesca	FvH4_5g23490
malus_domestica	MD00G1068700.v1.1 MD06G1023800.v1.1
prunus_persica	Prupe.5G024900_v2.0.a1
pyrus_communis	pycom16g25290
rosa_chinensis	RchiOBHm_Chr7g0212761
rosa_laevigata	RLG00000002870
rosa_multiflora	Rmu_sc0000394.1_g000033 Rmu_sc0008336.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246570 Rroxscaffold_3G00250790 Rroxscaffold_4G00321740 Rroxscaffold_4G00321750
rosa_rugosa	Rorug07G0136500
rosa_samantha	Rh7BG263500 Rh7CG287100
rosa_wichuraiana	Rw7G023130 Rw7G023160 Rw7G023230 Rw7G023270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	3 cut(s)	56, 500, 553
AclWI	GGATC	3 cut(s)	462, 644, 657
AcsI	RAATTY	4 cut(s)	97, 312, 1187, 1245
AcuI	CTGAAG	3 cut(s)	467, 567, 1222
AfaI	GTAC	2 cut(s)	324, 818
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	6 cut(s)	232, 451, 464, 542, 770, 1186
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AloI	GAACNNNNNNTCC	4 cut(s)	534, 566, 859, 891
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	462, 644, 657
Ama87I	CYCGRG	2 cut(s)	126, 975
AoxI	GGCC	2 cut(s)	134, 611
ApeKI	GCWGC	2 cut(s)	692, 971
ApoI	RAATTY	4 cut(s)	97, 312, 1187, 1245
ArsI	GACNNNNNNTTYG	4 cut(s)	167, 199, 521, 553
AseI	ATTAAT	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	909, 1062
AspS9I	GGNCC	2 cut(s)	389, 502
AsuC2I	CCSGG	2 cut(s)	127, 128
AsuNHI	GCTAGC	1 cut(s)	301
AvaI	CYCGRG	2 cut(s)	126, 975
AvaII	GGWCC	2 cut(s)	389, 502
BamHI	GGATCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	1234
BauI	CACGAG	2 cut(s)	741, 834
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	679, 958
BccI	CCATC	2 cut(s)	625, 740
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	441
BciVI	GTATCC	1 cut(s)	201
BcnI	CCSGG	2 cut(s)	127, 128
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	1015
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	2 cut(s)	693, 972
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	694, 973
Bme1390I	CCNGG	3 cut(s)	127, 128, 441
Bme18I	GGWCC	2 cut(s)	389, 502
BmeT110I	CYCGRG	2 cut(s)	126, 975
BmgT120I	GGNCC	2 cut(s)	389, 502
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	3 cut(s)	127, 128, 441
BmrI	ACTGGG	4 cut(s)	18, 66, 189, 572
BmsI	GCATC	2 cut(s)	7, 1246
BmtI	GCTAGC	1 cut(s)	305
BmuI	ACTGGG	4 cut(s)	18, 66, 189, 572
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	127, 128
Bsa29I	ATCGAT	1 cut(s)	736
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	7 cut(s)	13, 72, 184, 330, 567, 659, 1069
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	441
BseCI	ATCGAT	1 cut(s)	736
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	736
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	4 cut(s)	320, 650, 1026, 1162
BseNI	ACTGG	7 cut(s)	13, 72, 184, 330, 567, 659, 1069
BseXI	GCAGC	2 cut(s)	679, 958
BseYI	CCCAGC	3 cut(s)	335, 1127, 1157
Bsh1236I	CGCG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	136, 613
BshVI	ATCGAT	1 cut(s)	736
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	2 cut(s)	126, 975
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	4 cut(s)	109, 579, 930, 1134
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	4 cut(s)	109, 579, 930, 1134
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	2 cut(s)	136, 613
BsoBI	CYCGRG	2 cut(s)	126, 975
Bsp1286I	GDGCHC	2 cut(s)	439, 1234
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	5 cut(s)	454, 649, 733, 737, 1275
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	56, 500, 553
BspANI	GGCC	2 cut(s)	136, 613
BspCNI	CTCAG	4 cut(s)	319, 649, 1027, 1161
BspDI	ATCGAT	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	651
BspOI	GCTAGC	1 cut(s)	305
BspPI	GGATC	3 cut(s)	462, 644, 657
BsrGI	TGTACA	1 cut(s)	816
BsrI	ACTGG	7 cut(s)	13, 72, 184, 330, 567, 659, 1069
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	5 cut(s)	454, 649, 733, 737, 1275
BssSI	CACGAG	2 cut(s)	741, 834
Bst2BI	CACGAG	2 cut(s)	741, 834
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	3 cut(s)	87, 111, 152
BstAPI	GCANNNNNTGC	1 cut(s)	1168
BstAUI	TGTACA	1 cut(s)	816
BstC8I	GCNNGC	3 cut(s)	303, 583, 1173
BstDEI	CTNAG	4 cut(s)	306, 636, 1035, 1148
BstF5I	GGATG	1 cut(s)	736
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	909, 1062
BstKTI	GATC	5 cut(s)	457, 652, 736, 740, 1278
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	5 cut(s)	454, 649, 733, 737, 1275
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 307, 582, 1168, 1265
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	3 cut(s)	125, 126, 439
BstSFI	CTRYAG	1 cut(s)	1015
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	679, 958
BstX2I	RGATCY	2 cut(s)	454, 649
BstXI	CCANNNNNNTGG	1 cut(s)	1055
BstYI	RGATCY	2 cut(s)	454, 649
Bsu15I	ATCGAT	1 cut(s)	736
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	136, 613
BsuTUI	ATCGAT	1 cut(s)	736
BtsCI	GGATG	1 cut(s)	736
BtsIMutI	CAGTG	4 cut(s)	79, 92, 607, 1062
Cac8I	GCNNGC	3 cut(s)	303, 583, 1173
CfoI	GCGC	2 cut(s)	909, 1062
Cfr13I	GGNCC	2 cut(s)	389, 502
Cfr9I	CCCGGG	1 cut(s)	126
ClaI	ATCGAT	1 cut(s)	736
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	323, 817
CviAII	CATG	7 cut(s)	532, 573, 609, 646, 701, 884, 1199
CviQI	GTAC	2 cut(s)	323, 817
DdeI	CTNAG	4 cut(s)	306, 636, 1035, 1148
DpnI	GATC	5 cut(s)	456, 651, 735, 739, 1277
DpnII	GATC	5 cut(s)	454, 649, 733, 737, 1275
Eco24I	GRGCYC	1 cut(s)	1234
Eco32I	GATATC	2 cut(s)	266, 988
Eco47I	GGWCC	2 cut(s)	389, 502
Eco57I	CTGAAG	3 cut(s)	467, 567, 1222
Eco88I	CYCGRG	2 cut(s)	126, 975
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	439
EcoRV	GATATC	2 cut(s)	266, 988
EcoT38I	GRGCYC	1 cut(s)	1234
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	7 cut(s)	535, 576, 612, 649, 704, 887, 1202
FaqI	GGGAC	4 cut(s)	109, 579, 930, 1134
FatI	CATG	7 cut(s)	531, 572, 608, 645, 700, 883, 1198
Fnu4HI	GCNGC	2 cut(s)	693, 972
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	1 cut(s)	1234
Fsp4HI	GCNGC	2 cut(s)	693, 972
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	2 cut(s)	908, 1061
GluI	GCNGC	2 cut(s)	693, 972
GsaI	CCCAGC	3 cut(s)	339, 1131, 1161
HaeIII	GGCC	2 cut(s)	136, 613
HapII	CCGG	1 cut(s)	127
HhaI	GCGC	2 cut(s)	909, 1062
Hin1II	CATG	7 cut(s)	535, 576, 612, 649, 704, 887, 1202
Hin6I	GCGC	2 cut(s)	907, 1060
HinP1I	GCGC	2 cut(s)	907, 1060
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	6 cut(s)	47, 59, 118, 356, 1214, 1289
HpaII	CCGG	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	421, 1048
Hpy188I	TCNGA	7 cut(s)	117, 319, 408, 682, 1151, 1241, 1294
Hpy188III	TCNNGA	6 cut(s)	103, 155, 166, 485, 638, 743
Hpy8I	GTNNAC	2 cut(s)	421, 1048
HpyAV	CCTTC	4 cut(s)	445, 491, 862, 1075
HpyCH4III	ACNGT	3 cut(s)	87, 111, 152
HpyCH4IV	ACGT	1 cut(s)	1044
HpyCH4V	TGCA	1 cut(s)	712
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 307, 582, 1168, 1265
HpyF3I	CTNAG	4 cut(s)	306, 636, 1035, 1148
HpySE526I	ACGT	1 cut(s)	1044
Hsp92II	CATG	7 cut(s)	535, 576, 612, 649, 704, 887, 1202
HspAI	GCGC	2 cut(s)	907, 1060
Kzo9I	GATC	5 cut(s)	454, 649, 733, 737, 1275
LmnI	GCTCC	4 cut(s)	298, 434, 1132, 1264
Lsp1109I	GCAGC	2 cut(s)	679, 958
LweI	GCATC	2 cut(s)	7, 1246
MabI	ACCWGGT	1 cut(s)	439
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	1044
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	5 cut(s)	456, 651, 735, 739, 1277
MboI	GATC	5 cut(s)	454, 649, 733, 737, 1275
MboII	GAAGA	1 cut(s)	393
MflI	RGATCY	2 cut(s)	454, 649
MhlI	GDGCHC	2 cut(s)	439, 1234
MluCI	AATT	5 cut(s)	97, 312, 1053, 1187, 1245
MlyI	GAGTC	3 cut(s)	68, 1223, 1283
MmeI	TCCRAC	3 cut(s)	24, 126, 845
MseI	TTAA	4 cut(s)	219, 663, 930, 1011
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	1175
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	3 cut(s)	127, 128, 441
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	5 cut(s)	26, 307, 582, 1168, 1265
NciI	CCSGG	2 cut(s)	127, 128
NdeII	GATC	5 cut(s)	454, 649, 733, 737, 1275
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	7 cut(s)	535, 576, 612, 649, 704, 887, 1202
NlaIV	GGNNCC	1 cut(s)	651
NmeAIII	GCCGAG	1 cut(s)	557
NspI	RCATGY	1 cut(s)	576
PaeR7I	CTCGAG	1 cut(s)	975
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	47, 118, 356
PkrI	GCNGC	2 cut(s)	694, 973
PleI	GAGTC	3 cut(s)	67, 1222, 1283
PpsI	GAGTC	3 cut(s)	67, 1222, 1283
PpuMI	RGGWCCY	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	3 cut(s)	335, 1127, 1157
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	389, 502
PspPPI	RGGWCCY	1 cut(s)	389
PspXI	VCTCGAGB	1 cut(s)	975
PsuI	RGATCY	2 cut(s)	454, 649
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	2 cut(s)	324, 818
RsaNI	GTAC	2 cut(s)	323, 817
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	4 cut(s)	219, 663, 930, 1011
SatI	GCNGC	2 cut(s)	693, 972
Sau3AI	GATC	5 cut(s)	454, 649, 733, 737, 1275
Sau96I	GGNCC	2 cut(s)	389, 502
SchI	GAGTC	3 cut(s)	68, 1223, 1283
ScrFI	CCNGG	3 cut(s)	127, 128, 441
SduI	GDGCHC	2 cut(s)	439, 1234
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	7, 1246
SfcI	CTRYAG	1 cut(s)	1015
Sfr274I	CTCGAG	1 cut(s)	975
SinI	GGWCC	2 cut(s)	389, 502
SlaI	CTCGAG	1 cut(s)	975
SmaI	CCCGGG	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	975
SmoI	CTYRAG	1 cut(s)	975
Sse9I	AATT	5 cut(s)	97, 312, 1053, 1187, 1245
SsiI	CCGC	3 cut(s)	56, 500, 553
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	3 cut(s)	125, 126, 439
TaaI	ACNGT	3 cut(s)	87, 111, 152
TaiI	ACGT	1 cut(s)	1047
TaqI	TCGA	5 cut(s)	62, 254, 720, 736, 976
TasI	AATT	5 cut(s)	97, 312, 1053, 1187, 1245
TatI	WGTACW	2 cut(s)	322, 816
TfiI	GAWTC	3 cut(s)	47, 118, 356
Tru1I	TTAA	4 cut(s)	219, 663, 930, 1011
Tru9I	TTAA	4 cut(s)	219, 663, 930, 1011
TscAI	CASTG	4 cut(s)	79, 92, 607, 1069
TseI	GCWGC	2 cut(s)	692, 971
TspDTI	ATGAA	4 cut(s)	39, 525, 614, 634
TspMI	CCCGGG	1 cut(s)	126
TspRI	CASTG	4 cut(s)	79, 92, 607, 1069
VpaK11BI	GGWCC	2 cut(s)	389, 502
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	4 cut(s)	97, 312, 1187, 1245
XceI	RCATGY	1 cut(s)	576
XhoI	CTCGAG	1 cut(s)	975
XmaI	CCCGGG	1 cut(s)	126
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.