Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010049

Physical Location & Seq

Genomic Coordinates Reverse (-)

44611517 .. 44612096

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTTACTGGGAAAGATGCTAATGAAGCCAAATACAAGCCGTTGGATTCGTTCGCGGAGTCGAAGCTTCCCAGTGAGGTCTTACAGTACTGTGTGAATTTCCAGAAACCGTCTCCGATTCAGTCCCGGGCATGGCCTTTCTTGTTGGACGGTCGTGATTTAATTGGAATTGTGAAAACTGGGTCGGGTAAGACTTTGGTGTTTGGGATACCAGCTATTAAACAAGTGTTGAATAAGAGGAATGATGCTTGTTTTATTCACCACATCCAACAATCCAGATGTCTGGATACCTGCCTACAACTTGTAAAGCAAGTTTTTGAGAAGGACCAGACGAGGAAAACTATACTGGAGAAGGCCTTTAATTTAATAGAAGAAGATAATGCTGGATATGTCAATAAGGACCAGTGCATACGTTTGTTTGAGGAACATTGGAGTACTTGTCTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

149

Amino Acids

17.02

Weight (kDa)

8.2

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	38 - 82	6.5e-11	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0010049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31970
fragaria_vesca	FvH4_5g23490
malus_domestica	MD00G1068700.v1.1 MD06G1023800.v1.1
prunus_persica	Prupe.5G024900_v2.0.a1
pyrus_communis	pycom16g25290
rosa_chinensis	RchiOBHm_Chr7g0212761
rosa_laevigata	RLG00000002870
rosa_multiflora	Rmu_sc0000394.1_g000033 Rmu_sc0008336.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246570 Rroxscaffold_3G00250790 Rroxscaffold_4G00321740 Rroxscaffold_4G00321750
rosa_rugosa	Rorug07G0136500
rosa_samantha	Rh7BG263500 Rh7CG287100
rosa_wichuraiana	Rw7G023130 Rw7G023160 Rw7G023230 Rw7G023270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	97
AfaI	GTAC	2 cut(s)	89, 436
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	2 cut(s)	67, 215
AluI	AGCT	2 cut(s)	67, 215
Alw26I	GTCTC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	134, 354
ApoI	RAATTY	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	325, 400
AsuC2I	CCSGG	2 cut(s)	127, 128
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	2 cut(s)	325, 400
BceAI	ACGGC	1 cut(s)	25
BciVI	GTATCC	2 cut(s)	201, 280
BcnI	CCSGG	2 cut(s)	127, 128
BcoDI	GTCTC	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	299
BfuI	GTATCC	2 cut(s)	201, 280
BmcAI	AGTACT	2 cut(s)	89, 436
Bme1390I	CCNGG	2 cut(s)	127, 128
Bme18I	GGWCC	2 cut(s)	325, 400
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	325, 400
BmrFI	CCNGG	2 cut(s)	127, 128
BmrI	ACTGGG	3 cut(s)	18, 66, 189
BmsI	GCATC	2 cut(s)	7, 235
BmuI	ACTGGG	3 cut(s)	18, 66, 189
BpmI	CTGGAG	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	127, 128
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	5 cut(s)	13, 72, 184, 351, 403
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseNI	ACTGG	5 cut(s)	13, 72, 184, 351, 403
Bsh1236I	CGCG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	136, 356
BsiEI	CGRYCG	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	136, 356
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	444
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	136, 356
BspFNI	CGCG	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	299
BsrI	ACTGG	5 cut(s)	13, 72, 184, 351, 403
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	444
Bst4CI	ACNGT	4 cut(s)	87, 92, 111, 152
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	447
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	444
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	125, 126
BstUI	CGCG	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuI	GTATCC	2 cut(s)	201, 280
BsuRI	GGCC	2 cut(s)	136, 356
BtsCI	GGATG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	79, 410
BveI	ACCTGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	325, 400
Cfr9I	CCCGGG	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	88, 435
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	6 cut(s)	29, 40, 67, 136, 215, 356
CviKI_1	RGCY	6 cut(s)	29, 40, 67, 136, 215, 356
CviQI	GTAC	2 cut(s)	88, 435
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
Eco147I	AGGCCT	1 cut(s)	356
Eco47I	GGWCC	2 cut(s)	325, 400
Eco88I	CYCGRG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	1 cut(s)	135
FaiI	YATR	4 cut(s)	133, 344, 390, 410
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	131
FokI	GGATG	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	136, 356
HapII	CCGG	1 cut(s)	127
Hin1II	CATG	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	3 cut(s)	47, 59, 118
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	117, 444
Hpy188III	TCNNGA	4 cut(s)	103, 155, 276, 284
HpyAV	CCTTC	2 cut(s)	316, 346
HpyCH4III	ACNGT	4 cut(s)	87, 92, 111, 152
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	444
LweI	GCATC	2 cut(s)	7, 235
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	2 cut(s)	383, 386
MluCI	AATT	4 cut(s)	97, 162, 168, 361
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	3 cut(s)	24, 126, 292
MnlI	CCTC	4 cut(s)	70, 231, 327, 415
MseI	TTAA	4 cut(s)	161, 219, 360, 365
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	127, 128
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	2 cut(s)	127, 128
NdeII	GATC	1 cut(s)	444
NlaIII	CATG	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	47, 118
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	325, 400
RsaI	GTAC	2 cut(s)	89, 436
RsaNI	GTAC	2 cut(s)	88, 435
SaqAI	TTAA	4 cut(s)	161, 219, 360, 365
Sau3AI	GATC	1 cut(s)	444
Sau96I	GGNCC	2 cut(s)	325, 400
ScaI	AGTACT	2 cut(s)	89, 436
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	127, 128
SetI	ASST	5 cut(s)	69, 81, 217, 293, 415
SfaNI	GCATC	2 cut(s)	7, 235
SinI	GGWCC	2 cut(s)	325, 400
SmaI	CCCGGG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	97, 162, 168, 361
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	125, 126
TaaI	ACNGT	4 cut(s)	87, 92, 111, 152
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	97, 162, 168, 361
TatI	WGTACW	2 cut(s)	87, 434
TfiI	GAWTC	2 cut(s)	47, 118
Tru1I	TTAA	4 cut(s)	161, 219, 360, 365
Tru9I	TTAA	4 cut(s)	161, 219, 360, 365
TscAI	CASTG	2 cut(s)	79, 410
TspDTI	ATGAA	1 cut(s)	39
TspMI	CCCGGG	1 cut(s)	126
TspRI	CASTG	2 cut(s)	79, 410
VpaK11BI	GGWCC	2 cut(s)	325, 400
XapI	RAATTY	1 cut(s)	97
XmaI	CCCGGG	1 cut(s)	126
ZrmI	AGTACT	2 cut(s)	89, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.