Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010049

Physical Location & Seq

Genomic Coordinates Forward (+)

2944318 .. 2947812

Gene Structure 3495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1023800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTTTGCATACAGACATCATCATTGGAACTCATGGTCGTTTGAAAGATCATTGAAATGGGTGTGTTGCCTGAAGGAAGTATCTATTACGGTAATTATCTTTTACCTGGAGGAAGTATCTATTACGGTCCTTGATGAAGCAGATCGAATGCTTGACATGGGATTTGAACCAGAAGTTCGCTATATATCGGGTCAGACATGCTCTGCTCGCCAAATGGTAATGTTCAGGGCTACATGGCCTCCATCAGTTCATCAGTTAGCTCAGGAGTTCATGGACCCTAATCCTGTTAAGGTTGTTGTTGGGTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAGATAGTTGAGGTGTTGGATGAACATTCATGTGATGGGCGCTTGGTTGCATTGCTAGAAAAATGCCACAAATCTAAGAGTAAGTATTGGCTCATTATCTCCCATTATTTTATTTTAACTTGTGTCTTGGTCAATCCCTGGCGGATTGTTTTTGGACCTAGTGTTGTGTATTTGAACATAGTTTTGATTTTTGTCTTGTACAAAAAGGAAGCCACTTGTGTTGAGATTATGCTGCAAAAAGGAGGTTGGAAGGCTGTTTCTATACACGGTGACAAGGCACAAAGTGAGCGTACGAAGGCACTCTCTCTATTCAAGAAAGGAAGCTGCCTCTTGGTGATAGCTACTGATGTGGCTGCTCGTGGATTGGATATTCCAAATGTTGAAGTAGTGATTAACTATAGTTTTCTTCTCACTACTGAGGATTATGTCCGCCGAATTGGGTGGACTGGACGGGCTGGAAAGAAGGGTGTTGCTCATACTTTTTTCACACATCGGACCAAGGGACTTGCGGGGGAGATGGTCAATGTTCTCAGAGAAGCCAGCCAAATTGTGCCTGAAGCCTTGTTAAAATTTGGCACTCATGAGTCCAAACTTTACGGGGCTCACTTCAAAGAGATTCCTGCAGATGCTCCAAAGTCTCAAAAAATAACCTTCAACTCTGACGATGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

337

Amino Acids

38.16

Weight (kDa)

6.89

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	35 - 85	1.3e-08	DEAD/DEAH box helicase
Helicase_C	PF00271	173 - 265	3.1e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31970
fragaria_vesca	FvH4_5g23490
malus_domestica	MD00G1068700.v1.1 MD06G1023800.v1.1
prunus_persica	Prupe.5G024900_v2.0.a1
pyrus_communis	pycom16g25290
rosa_chinensis	RchiOBHm_Chr7g0212761
rosa_laevigata	RLG00000002870
rosa_multiflora	Rmu_sc0000394.1_g000033 Rmu_sc0008336.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246570 Rroxscaffold_3G00250790 Rroxscaffold_4G00321740 Rroxscaffold_4G00321750
rosa_rugosa	Rorug07G0136500
rosa_samantha	Rh7BG263500 Rh7CG287100
rosa_wichuraiana	Rw7G023130 Rw7G023160 Rw7G023230 Rw7G023270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	478, 766, 845
AcsI	RAATTY	1 cut(s)	905
AcuI	CTGAAG	2 cut(s)	92, 912
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	536, 628
AgsI	TTSAA	8 cut(s)	44, 55, 167, 511, 649, 719, 946, 991
AjnI	CCWGG	2 cut(s)	105, 473
AluBI	AGCT	4 cut(s)	260, 317, 660, 677
AluI	AGCT	4 cut(s)	260, 317, 660, 677
Alw26I	GTCTC	1 cut(s)	978
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	4 cut(s)	317, 568, 660, 689
ApoI	RAATTY	1 cut(s)	905
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	4 cut(s)	127, 274, 491, 831
AsuHPI	GGTGA	2 cut(s)	617, 682
AvaII	GGWCC	4 cut(s)	127, 274, 491, 831
BanII	GRGCYC	1 cut(s)	940
BauI	CACGAG	1 cut(s)	693
BbvI	GCAGC	4 cut(s)	304, 555, 647, 676
BccI	CCATC	3 cut(s)	250, 365, 847
BciT130I	CCWGG	2 cut(s)	107, 475
BcoDI	GTCTC	1 cut(s)	978
BfaI	CTAG	2 cut(s)	392, 495
BfmI	CTRYAG	2 cut(s)	733, 957
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	4 cut(s)	318, 569, 661, 690
BlsI	GCNGC	4 cut(s)	319, 570, 662, 691
Bme1390I	CCNGG	2 cut(s)	107, 475
Bme18I	GGWCC	4 cut(s)	127, 274, 491, 831
BmgT120I	GGNCC	4 cut(s)	127, 274, 491, 831
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	2 cut(s)	107, 475
BmsI	GCATC	1 cut(s)	952
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	473, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bse1I	ACTGG	1 cut(s)	787
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	2 cut(s)	107, 475
BseDI	CCNNGG	2 cut(s)	473, 834
BseGI	GGATG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	3 cut(s)	275, 744, 880
BseNI	ACTGG	1 cut(s)	787
BseXI	GCAGC	4 cut(s)	304, 555, 647, 676
BshFI	GGCC	1 cut(s)	238
BsiWI	CGTACG	1 cut(s)	626
BslFI	GGGAC	1 cut(s)	852
BsmAI	GTCTC	1 cut(s)	978
BsmFI	GGGAC	1 cut(s)	852
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	940
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	47, 142
BspACI	CCGC	3 cut(s)	478, 766, 845
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	3 cut(s)	274, 745, 879
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	386
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	2 cut(s)	473, 834
BssMI	GATC	2 cut(s)	47, 142
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	834
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	2 cut(s)	107, 475
Bst4CI	ACNGT	3 cut(s)	91, 127, 605
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	208, 877
BstDEI	CTNAG	4 cut(s)	261, 411, 753, 866
BstF5I	GGATG	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	2 cut(s)	50, 145
BstMAI	GTCTC	1 cut(s)	978
BstMBI	GATC	2 cut(s)	47, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	2 cut(s)	107, 475
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	105, 473
BstSFI	CTRYAG	2 cut(s)	733, 957
BstV1I	GCAGC	4 cut(s)	304, 555, 647, 676
BsuRI	GGCC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	208, 877
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	4 cut(s)	127, 274, 491, 831
Csp6I	GTAC	2 cut(s)	535, 627
CspCI	CAANNNNNGTGG	2 cut(s)	538, 573
CviAII	CATG	8 cut(s)	33, 157, 198, 234, 271, 326, 366, 917
CviQI	GTAC	2 cut(s)	535, 627
DdeI	CTNAG	4 cut(s)	261, 411, 753, 866
DpnI	GATC	2 cut(s)	49, 144
DpnII	GATC	2 cut(s)	47, 142
DraIII	CACNNNGTG	1 cut(s)	620
EciI	GGCGGA	2 cut(s)	493, 755
Eco130I	CCWWGG	1 cut(s)	834
Eco24I	GRGCYC	1 cut(s)	940
Eco47I	GGWCC	4 cut(s)	127, 274, 491, 831
Eco57I	CTGAAG	2 cut(s)	92, 912
EcoRII	CCWGG	2 cut(s)	105, 473
EcoT14I	CCWWGG	1 cut(s)	834
EcoT38I	GRGCYC	1 cut(s)	940
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	8 cut(s)	36, 160, 201, 237, 274, 329, 369, 920
FaqI	GGGAC	1 cut(s)	852
FatI	CATG	8 cut(s)	32, 156, 197, 233, 270, 325, 365, 916
FauI	CCCGC	1 cut(s)	838
Fnu4HI	GCNGC	4 cut(s)	318, 569, 661, 690
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	940
Fsp4HI	GCNGC	4 cut(s)	318, 569, 661, 690
FspBI	CTAG	2 cut(s)	392, 495
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	4 cut(s)	318, 569, 661, 690
GsuI	CTGGAG	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	8 cut(s)	36, 160, 201, 237, 274, 329, 369, 920
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	2 cut(s)	920, 952
HphI	GGTGA	2 cut(s)	617, 682
Hpy166II	GTNNAC	1 cut(s)	780
Hpy188I	TCNGA	5 cut(s)	195, 307, 831, 869, 997
Hpy188III	TCNNGA	3 cut(s)	263, 649, 917
Hpy8I	GTNNAC	1 cut(s)	780
HpyAV	CCTTC	5 cut(s)	67, 580, 625, 793, 997
HpyCH4III	ACNGT	3 cut(s)	91, 127, 605
HpyCH4V	TGCA	5 cut(s)	8, 337, 386, 571, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	4 cut(s)	261, 411, 753, 866
Hsp92II	CATG	8 cut(s)	36, 160, 201, 237, 274, 329, 369, 920
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	47, 142
LmnI	GCTCC	1 cut(s)	970
Lsp1109I	GCAGC	4 cut(s)	304, 555, 647, 676
LweI	GCATC	1 cut(s)	952
MaeI	CTAG	2 cut(s)	392, 495
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	2 cut(s)	49, 144
MboI	GATC	2 cut(s)	47, 142
MboII	GAAGA	1 cut(s)	734
MhlI	GDGCHC	1 cut(s)	940
MluCI	AATT	4 cut(s)	93, 771, 882, 905
MlyI	GAGTC	1 cut(s)	929
MmeI	TCCRAC	2 cut(s)	333, 563
MnlI	CCTC	7 cut(s)	103, 249, 301, 340, 572, 674, 748
MseI	TTAA	4 cut(s)	288, 452, 729, 902
MslI	CAYNNNNRTG	2 cut(s)	55, 366
MspR9I	CCNGG	2 cut(s)	107, 475
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	2 cut(s)	107, 475
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	2 cut(s)	47, 142
NlaIII	CATG	8 cut(s)	36, 160, 201, 237, 274, 329, 369, 920
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	201
PagI	TCATGA	1 cut(s)	916
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	952
Pfl23II	CGTACG	1 cut(s)	626
PkrI	GCNGC	4 cut(s)	319, 570, 662, 691
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
Psp6I	CCWGG	2 cut(s)	105, 473
PspGI	CCWGG	2 cut(s)	105, 473
PspLI	CGTACG	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	4 cut(s)	127, 274, 491, 831
PstI	CTGCAG	1 cut(s)	961
RsaI	GTAC	2 cut(s)	536, 628
RsaNI	GTAC	2 cut(s)	535, 627
RseI	CAYNNNNRTG	2 cut(s)	55, 366
SaqAI	TTAA	4 cut(s)	288, 452, 729, 902
SatI	GCNGC	4 cut(s)	318, 569, 661, 690
Sau3AI	GATC	2 cut(s)	47, 142
Sau96I	GGNCC	4 cut(s)	127, 274, 491, 831
SchI	GAGTC	1 cut(s)	929
ScrFI	CCNGG	2 cut(s)	107, 475
SduI	GDGCHC	1 cut(s)	940
SfaNI	GCATC	1 cut(s)	952
SfcI	CTRYAG	2 cut(s)	733, 957
SinI	GGWCC	4 cut(s)	127, 274, 491, 831
SmiMI	CAYNNNNRTG	2 cut(s)	55, 366
Sse9I	AATT	4 cut(s)	93, 771, 882, 905
SsiI	CCGC	3 cut(s)	478, 766, 845
SspMI	CTAG	2 cut(s)	392, 495
StyD4I	CCNGG	2 cut(s)	105, 473
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	3 cut(s)	91, 127, 605
TaqI	TCGA	1 cut(s)	145
TasI	AATT	4 cut(s)	93, 771, 882, 905
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	952
Tru1I	TTAA	4 cut(s)	288, 452, 729, 902
Tru9I	TTAA	4 cut(s)	288, 452, 729, 902
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	4 cut(s)	317, 568, 660, 689
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	5 cut(s)	150, 239, 259, 354, 372
VpaK11BI	GGWCC	4 cut(s)	127, 274, 491, 831
XapI	RAATTY	1 cut(s)	905
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	2 cut(s)	392, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.