Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010049

Physical Location & Seq

Genomic Coordinates Reverse (-)

24053553 .. 24060482

Gene Structure 6930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG263500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGTTTGTGTTGCCTTAAGGAAGTATCTTTTGCGGTCCTTGATGAAGCAGATAGAATGCTTGACATGGGATTTGAACCTGAAGTCCGCTATATACTGGGACAGACATGCTCGGCTCGCCAAATGGTAATGTTCAGTGCGACATGGCCTCCATCAGTTCATCAGTTAGCTCAGGAGTTCATGGATCCTAATCCAGTTAAGGTGGTTGTTGGTTCAGAGGATTTAGCTGCCAACCATGATGTCCTGCAGATAGTCGAGGTCTTGGATGATCGATCTCGCGATGCACGTTTGGTTGCTTTGCTAGAAAAATACCACAAATCCAAAGGAAACAGAGTTTTGGTGTTTGTCTTGTACAAAATGGAAGCTACTCGTGTTGAAAATATGCTGCAACGAGGGGGTTGGAAGGTCTGTTCTATACATGGTGATAAAGCACAAAATCAGCGCACACAGGCACTATCTCTATTTAAGCAGGGAAGCTGTCCCTTGATGATTGCTACTGATGTGGCTGCTCGAGGATTAGATATCCCAGATGTTGAGGTAGTGATTAACTATAGTTTTCCACTCACTACCGAGGATTATGTCCACAGAATTGGGCGCACTGGACGGGCCGGTAAGAAGGGTGTTGCTCATACCTTTTTCACACATCACAACAAGGGACTTGCTGGGGAGCTGGTCAATGTTCTCAGAGAAGCTGGGCAAAATGTGCCAGCTGACTTGTTGAAGTTTGGCACTCATGTAAAGAAAAAGGAATCCAAACTTTATGGGGCTCACTTCAGAGAAATTTCTGCCGATGCTCCAAAGGCTAAAAAGATCACATTCGCTGACTCTGATGATGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

280

Amino Acids

31.2

Weight (kDa)

6.8

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	6 - 55	2.4e-11	DEAD/DEAH box helicase
Helicase_C	PF00271	98 - 204	5.1e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31970
fragaria_vesca	FvH4_5g23490
malus_domestica	MD00G1068700.v1.1 MD06G1023800.v1.1
prunus_persica	Prupe.5G024900_v2.0.a1
pyrus_communis	pycom16g25290
rosa_chinensis	RchiOBHm_Chr7g0212761
rosa_laevigata	RLG00000002870
rosa_multiflora	Rmu_sc0000394.1_g000033 Rmu_sc0008336.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246570 Rroxscaffold_3G00250790 Rroxscaffold_4G00321740 Rroxscaffold_4G00321750
rosa_rugosa	Rorug07G0136500
rosa_samantha	Rh7BG263500 Rh7CG287100
rosa_wichuraiana	Rw7G023130 Rw7G023160 Rw7G023230 Rw7G023270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	35, 88
AclWI	GGATC	2 cut(s)	179, 192
AcsI	RAATTY	1 cut(s)	780
AcuI	CTGAAG	2 cut(s)	102, 757
AfaI	GTAC	1 cut(s)	353
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	77, 377, 721
AloI	GAACNNNNNNTCC	4 cut(s)	69, 101, 394, 426
AluBI	AGCT	7 cut(s)	170, 227, 365, 477, 670, 692, 710
AluI	AGCT	7 cut(s)	170, 227, 365, 477, 670, 692, 710
AlwI	GGATC	2 cut(s)	179, 192
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	2 cut(s)	146, 606
ApeKI	GCWGC	3 cut(s)	227, 385, 506
ApoI	RAATTY	1 cut(s)	780
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	2 cut(s)	444, 597
AspS9I	GGNCC	2 cut(s)	37, 606
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	769
BauI	CACGAG	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	214, 372, 493
BccI	CCATC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	2 cut(s)	245, 550
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	3 cut(s)	228, 386, 507
BlsI	GCNGC	3 cut(s)	229, 387, 508
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	37, 606
BmiI	GGNNCC	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	271, 781
BmuI	ACTGGG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	570
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bse118I	RCCGGY	1 cut(s)	608
Bse1I	ACTGG	3 cut(s)	102, 194, 604
Bse8I	GATNNNNATC	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	185, 697
BseNI	ACTGG	3 cut(s)	102, 194, 604
BseXI	GCAGC	3 cut(s)	214, 372, 493
BseYI	CCCAGC	2 cut(s)	662, 692
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	148, 608
BshVI	ATCGAT	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	3 cut(s)	114, 465, 669
BsmFI	GGGAC	3 cut(s)	114, 465, 669
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	148, 608
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	184, 268, 272, 810
Bsp68I	TCGCGA	1 cut(s)	279
BspACI	CCGC	2 cut(s)	35, 88
BspANI	GGCC	2 cut(s)	148, 608
BspCNI	CTCAG	2 cut(s)	184, 696
BspDI	ATCGAT	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	2 cut(s)	179, 192
BspTI	CTTAAG	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	102, 194, 604
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	4 cut(s)	184, 268, 272, 810
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
BstAFI	CTTAAG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstAUI	TGTACA	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	118, 708
BstDEI	CTNAG	2 cut(s)	171, 683
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	444, 597
BstKTI	GATC	4 cut(s)	187, 271, 275, 813
BstMBI	GATC	4 cut(s)	184, 268, 272, 810
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 703, 800
BstNSI	RCATGY	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	245, 550
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	214, 372, 493
BstX2I	RGATCY	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	148, 608
BsuTUI	ATCGAT	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	142, 597
BtuMI	TCGCGA	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	118, 708
CfoI	GCGC	2 cut(s)	444, 597
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	2 cut(s)	37, 606
ClaI	ATCGAT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	7 cut(s)	67, 108, 144, 181, 236, 419, 734
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	171, 683
DpnI	GATC	4 cut(s)	186, 270, 274, 812
DpnII	GATC	4 cut(s)	184, 268, 272, 810
Eco24I	GRGCYC	1 cut(s)	769
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	102, 757
Eco88I	CYCGRG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	769
FaeI	CATG	7 cut(s)	70, 111, 147, 184, 239, 422, 737
FaqI	GGGAC	3 cut(s)	114, 465, 669
FatI	CATG	7 cut(s)	66, 107, 143, 180, 235, 418, 733
Fnu4HI	GCNGC	3 cut(s)	228, 386, 507
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	769
Fsp4HI	GCNGC	3 cut(s)	228, 386, 507
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	2 cut(s)	443, 596
GluI	GCNGC	3 cut(s)	228, 386, 507
GsaI	CCCAGC	2 cut(s)	666, 696
HaeIII	GGCC	2 cut(s)	148, 608
HapII	CCGG	1 cut(s)	609
HhaI	GCGC	2 cut(s)	444, 597
Hin1II	CATG	7 cut(s)	70, 111, 147, 184, 239, 422, 737
Hin6I	GCGC	2 cut(s)	442, 595
HinP1I	GCGC	2 cut(s)	442, 595
HinfI	GANTC	2 cut(s)	749, 824
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	4 cut(s)	217, 686, 776, 829
Hpy188III	TCNNGA	2 cut(s)	173, 278
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	2 cut(s)	397, 610
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	247, 284, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 703, 800
HpyF3I	CTNAG	2 cut(s)	171, 683
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	7 cut(s)	70, 111, 147, 184, 239, 422, 737
HspAI	GCGC	2 cut(s)	442, 595
Kzo9I	GATC	4 cut(s)	184, 268, 272, 810
LmnI	GCTCC	2 cut(s)	667, 799
Lsp1109I	GCAGC	3 cut(s)	214, 372, 493
LweI	GCATC	2 cut(s)	271, 781
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	286
MalI	GATC	4 cut(s)	186, 270, 274, 812
MboI	GATC	4 cut(s)	184, 268, 272, 810
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	769
MluCI	AATT	2 cut(s)	588, 780
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	159, 211, 250, 386, 506, 529, 565
MseI	TTAA	4 cut(s)	18, 198, 465, 546
MspA1I	CMGCKG	1 cut(s)	710
MspCI	CTTAAG	1 cut(s)	17
MspI	CCGG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	63
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	117, 703, 800
NdeII	GATC	4 cut(s)	184, 268, 272, 810
NlaIII	CATG	7 cut(s)	70, 111, 147, 184, 239, 422, 737
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	92
NruI	TCGCGA	1 cut(s)	279
NspI	RCATGY	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	749
PkrI	GCNGC	3 cut(s)	229, 387, 508
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
PspFI	CCCAGC	2 cut(s)	662, 692
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	37, 606
PspXI	VCTCGAGB	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	710
RruI	TCGCGA	1 cut(s)	279
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	4 cut(s)	18, 198, 465, 546
SatI	GCNGC	3 cut(s)	228, 386, 507
Sau3AI	GATC	4 cut(s)	184, 268, 272, 810
Sau96I	GGNCC	2 cut(s)	37, 606
SchI	GAGTC	1 cut(s)	818
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	2 cut(s)	271, 781
SfcI	CTRYAG	2 cut(s)	245, 550
Sfr274I	CTCGAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	17, 510
SmoI	CTYRAG	2 cut(s)	17, 510
Sse9I	AATT	2 cut(s)	588, 780
SsiI	CCGC	2 cut(s)	35, 88
SspMI	CTAG	1 cut(s)	302
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	3 cut(s)	255, 271, 511
TasI	AATT	2 cut(s)	588, 780
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	4 cut(s)	18, 198, 465, 546
Tru9I	TTAA	4 cut(s)	18, 198, 465, 546
TscAI	CASTG	2 cut(s)	142, 604
TseI	GCWGC	3 cut(s)	227, 385, 506
TspDTI	ATGAA	3 cut(s)	60, 149, 169
TspRI	CASTG	2 cut(s)	142, 604
Vha464I	CTTAAG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	780
XceI	RCATGY	1 cut(s)	111
XhoI	CTCGAG	1 cut(s)	510
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.