Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010049

Physical Location & Seq

Genomic Coordinates Reverse (-)

51345946 .. 51346829

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGTCGGAAGCTCAAAGACCCCTCAACTCTCGGCCGACCCGGAAGCCCGGGAAGCCACGAACCACCGCGAAGCCAAAGCCGAGAAGAAGAAGATGACCAACTCGGTCCTCCTAAGCGAAAGTTGGAGGAAGAGATTTCAGAATCTAAAAAGAAGAAGAAGAAGCACAAGAAATCGAAAGAGAGCGTAAACGGTGAGGAGGAGCCGAAGGGAAATGGAGAAGTGGAAGAGAGTAATTCCACCGATGCGGTTGTGATGGTTACCGGGAAAGATGCTAATGAGGCCAAATACAAGCCGTTGGATTCGTTCGCGGAGTCGAAGCTTCCAGTGAGGTCTTACGGTCTGTGCGAATTTCCGAAACCGTCTCCGATTCGGTCCCCGGCGTGGCCTTTCTTGTTGGACGGTCGTGATTTTATTGGAATTGCGAAACCGGGTCGGCGAGATAGAATGCTTGACATGGGATTTGAACTCGAAGTCCGCTATATACTAGGACGGACATGCTCGGCTCGCCAAATGGTAATGTTCGGTGCGACATGGCCTCCATCGGTTCATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

185

Amino Acids

20.77

Weight (kDa)

9.15

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31970
fragaria_vesca	FvH4_5g23490
malus_domestica	MD00G1068700.v1.1 MD06G1023800.v1.1
prunus_persica	Prupe.5G024900_v2.0.a1
pyrus_communis	pycom16g25290
rosa_chinensis	RchiOBHm_Chr7g0212761
rosa_laevigata	RLG00000002870
rosa_multiflora	Rmu_sc0000394.1_g000033 Rmu_sc0008336.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246570 Rroxscaffold_3G00250790 Rroxscaffold_4G00321740 Rroxscaffold_4G00321750
rosa_rugosa	Rorug07G0136500
rosa_samantha	Rh7BG263500 Rh7CG287100
rosa_wichuraiana	Rw7G023130 Rw7G023160 Rw7G023230 Rw7G023270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	70, 311
AciI	CCGC	4 cut(s)	68, 248, 311, 478
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	467
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	2 cut(s)	13, 322
AluI	AGCT	2 cut(s)	13, 322
Alw26I	GTCTC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	4 cut(s)	34, 282, 386, 536
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AspS9I	GGNCC	2 cut(s)	107, 375
AsuC2I	CCSGG	6 cut(s)	42, 50, 51, 265, 380, 432
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	107, 375
BccI	CCATC	2 cut(s)	250, 550
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	6 cut(s)	42, 50, 51, 265, 380, 432
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	488, 556
Bme1390I	CCNGG	6 cut(s)	42, 50, 51, 265, 380, 432
Bme18I	GGWCC	2 cut(s)	107, 375
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	107, 375
BmiI	GGNNCC	2 cut(s)	204, 377
BmrFI	CCNGG	6 cut(s)	42, 50, 51, 265, 380, 432
BmsI	GCATC	2 cut(s)	235, 262
Bpu10I	CCTNAGC	1 cut(s)	114
BpuMI	CCSGG	6 cut(s)	42, 50, 51, 265, 380, 432
BsaJI	CCNNGG	2 cut(s)	49, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	49, 378
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	212, 215
BseX3I	CGGCCG	1 cut(s)	34
Bsh1236I	CGCG	2 cut(s)	70, 311
Bsh1285I	CGRYCG	2 cut(s)	37, 406
BshFI	GGCC	4 cut(s)	36, 284, 388, 538
BsiEI	CGRYCG	2 cut(s)	37, 406
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	5 cut(s)	42, 50, 264, 380, 431
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	1 cut(s)	369
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	4 cut(s)	36, 284, 388, 538
BsoBI	CYCGRG	1 cut(s)	49
BspACI	CCGC	4 cut(s)	68, 248, 311, 478
BspANI	GGCC	4 cut(s)	36, 284, 388, 538
BspFNI	CGCG	2 cut(s)	70, 311
BspLI	GGNNCC	2 cut(s)	204, 377
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	49, 378
Bst4CI	ACNGT	4 cut(s)	194, 341, 363, 404
Bst6I	CTCTTC	2 cut(s)	126, 222
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	114
BstEII	GGTNACC	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	70, 311
BstMAI	GTCTC	1 cut(s)	369
BstMCI	CGRYCG	2 cut(s)	37, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 281, 507
BstNSI	RCATGY	1 cut(s)	501
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	6 cut(s)	40, 48, 49, 263, 378, 430
BstUI	CGCG	2 cut(s)	70, 311
BstZI	CGGCCG	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	36, 284, 388, 538
BtgZI	GCGATG	1 cut(s)	536
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	2 cut(s)	107, 375
Cfr9I	CCCGGG	1 cut(s)	49
CviAII	CATG	3 cut(s)	457, 498, 534
DdeI	CTNAG	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	34
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	126, 222
EarI	CTCTTC	2 cut(s)	126, 222
EclXI	CGGCCG	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	107, 375
Eco52I	CGGCCG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	3 cut(s)	460, 501, 537
FaiI	YATR	5 cut(s)	458, 483, 485, 499, 535
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	3 cut(s)	456, 497, 533
FspBI	CTAG	2 cut(s)	488, 556
HaeIII	GGCC	4 cut(s)	36, 284, 388, 538
HapII	CCGG	5 cut(s)	42, 50, 264, 380, 431
Hin1II	CATG	3 cut(s)	460, 501, 537
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	4 cut(s)	143, 302, 314, 370
HpaII	CCGG	5 cut(s)	42, 50, 264, 380, 431
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	4 cut(s)	9, 142, 357, 369
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	4 cut(s)	194, 341, 363, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 281, 507
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	460, 501, 537
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	6 cut(s)	55, 63, 277, 339, 393, 444
LweI	GCATC	2 cut(s)	235, 262
MaeI	CTAG	2 cut(s)	488, 556
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	8 cut(s)	98, 101, 104, 143, 166, 169, 172, 239
MluCI	AATT	3 cut(s)	235, 350, 420
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	3 cut(s)	105, 279, 378
MnlI	CCTC	8 cut(s)	34, 120, 121, 190, 193, 274, 324, 549
MspI	CCGG	5 cut(s)	42, 50, 264, 380, 431
MspR9I	CCNGG	6 cut(s)	42, 50, 51, 265, 380, 432
Mva1269I	GAATGC	1 cut(s)	453
MvnI	CGCG	2 cut(s)	70, 311
MwoI	GCNNNNNNNGC	3 cut(s)	54, 281, 507
NciI	CCSGG	6 cut(s)	42, 50, 51, 265, 380, 432
NlaIII	CATG	3 cut(s)	460, 501, 537
NlaIV	GGNNCC	2 cut(s)	204, 377
NmeAIII	GCCGAG	3 cut(s)	12, 107, 482
NspI	RCATGY	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	143, 302, 370
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	204, 377
PspPI	GGNCC	2 cut(s)	107, 375
Sau96I	GGNCC	2 cut(s)	107, 375
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	6 cut(s)	42, 50, 51, 265, 380, 432
SetI	ASST	3 cut(s)	15, 324, 335
SfaNI	GCATC	2 cut(s)	235, 262
SinI	GGWCC	2 cut(s)	107, 375
SmaI	CCCGGG	1 cut(s)	51
Sse9I	AATT	3 cut(s)	235, 350, 420
SsiI	CCGC	4 cut(s)	68, 248, 311, 478
SspMI	CTAG	2 cut(s)	488, 556
StyD4I	CCNGG	6 cut(s)	40, 48, 49, 263, 378, 430
TaaI	ACNGT	4 cut(s)	194, 341, 363, 404
TaqI	TCGA	3 cut(s)	176, 317, 471
TaqII	GACCGA	2 cut(s)	95, 363
TasI	AATT	3 cut(s)	235, 350, 420
TfiI	GAWTC	3 cut(s)	143, 302, 370
TscAI	CASTG	1 cut(s)	333
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	1 cut(s)	508
TspMI	CCCGGG	1 cut(s)	49
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	107, 375
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	501
XmaI	CCCGGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	488, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.