AT1G32380

ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009863
Physical Location & Seq
Forward (+)
11681734 .. 11684520
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32380.2

Sequence Viewer

Length: 1203 bp
ATGGCGTCGTTGGCTCTGACTTCTCCTCCCTCCGTTAAGATTCCTTCGTATCTCTCCTCGTCGTCTTCGTCTCTCTTCTCCCGTTCCTCGATTTCTTTCAGGACCACTGAGTCTCGCTCTCGAATCTGCGTTTCTGGTTACGCGAAATGCAATTTGCCTAAGGCACTAAACGGGAACGCTCGTGTTCCAATTATTAATGAGACGACAATTCCTAAGTTCTTTGATTCTTCACGGTTGGAGAAATCGGTTAGTAGAAACAATACTAAGCTCAAGTTGTTCTCTGGTACTGCTAATCCAGCTTTATCTCAGGAAATTGCTTGGTATATGGGTCTGGAGCTTGGGAAGGTTAGCATAAAGAGATTTGCTGATGGAGAGATCTATGTTCAGCTCAAAGAAAGTGTTAGAGGTTGCGATGTCTTTTTGGTGCAGCCTACTTGCACTCCAACTAATGAGAATCTCATGGAGCTATTGATCATGGTGGATGCTTGCCGAAGAGCATCAGCTAAGAAAGTCACAGCTGTGATTCCGTATTTTGGATACGCAAGAGCTGATAGAAAGACACAAGGGCGTGAATCTATTGCTGCCAAATTGGTAGCAAACCTTATAACAGAAGCCGGTGCAGATAGGGTTCTGGCTTGTGATCTTCATTCAGGACAATCCATGGGTTATTTTGACATACCAGTGGATCATGTCTATTGCCAGCCTGTGATACTTGATTATCTTGCTAGCAAGTCAATTTCCTCTGAGGATTTGGTAGTGGTTTCTCCTGATGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAAGAAATTATCTGATGCACCACTTGCCATTGTCGATAAAAGGCGTCACGGCCACAATGTCGCTGAGGTCATGAACCTAATCGGTGATGTTAAAGGGAAGGTGGCAGTAATGGTGGATGATATTATTGATACAGCTGGAACCATTGTGAAAGGAGCAGCTCTTTTACACGAGGAGGGTGCACGTGAGGTTTACGCTTGCTGTACACACGCTGTTTTCAGTCCTCCTGCGATAGAGCGGTTATCAAGCGGTTTGCTGCAAGAAGTGATAGTGACGAATACTTTACCAGTAGCGGAGAAGAATTACTTCCCGCAGTTAACGATATTATCGGTGGCTAATCTTCTGGGTGAGACCATTTGGCGTGTCCATGATGATAGCTCCGTTAGTAGTATTTTCCTTTGA

Protein Analysis

400

Amino Acids

43.33

Weight (kDa)

8.48

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 2 - 98 1.9e-45 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 135 - 230 1.7e-18 Phosphoribosyl transferase domain
Pribosyl_synth PF14572 183 - 291 5.1e-25 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AasI GACNNNNNNGTC 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 1039
AccII CGCG 1 cut(s) 143
AciI CCGC 4 cut(s) 1039, 1050, 1094, 1112
AclWI GGATC 1 cut(s) 693
AcoI YGGCCR 1 cut(s) 853
AcvI CACGTG 2 cut(s) 794, 986
AcyI GRCGYC 2 cut(s) 5, 847
AfaI GTAC 2 cut(s) 286, 1006
AfiI CCNNNNNNNGG 2 cut(s) 533, 773
AjnI CCWGG 1 cut(s) 785
AleI CACNNNNGTG 1 cut(s) 518
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 4 cut(s) 75, 117, 194, 1145
Alw44I GTGCAC 1 cut(s) 981
AlwI GGATC 1 cut(s) 693
AoxI GGCC 1 cut(s) 853
ApaLI GTGCAC 1 cut(s) 981
ApeKI GCWGC 4 cut(s) 427, 581, 959, 1057
AseI ATTAAT 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 1106
AspS9I GGNCC 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 899, 1160
AsuNHI GCTAGC 1 cut(s) 725
AvaII GGWCC 1 cut(s) 102
AxyI CCTNAGG 1 cut(s) 159
BaeGI GKGCMC 2 cut(s) 793, 985
BauI CACGAG 2 cut(s) 180, 971
BbrPI CACGTG 2 cut(s) 794, 986
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 985
BbvCI CCTCAGC 1 cut(s) 867
BbvI GCAGC 4 cut(s) 439, 568, 971, 1044
BccI CCATC 1 cut(s) 362
BceAI ACGGC 1 cut(s) 868
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciT130I CCWGG 1 cut(s) 787
BciVI GTATCC 1 cut(s) 530
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 4 cut(s) 75, 117, 194, 1145
BfaI CTAG 1 cut(s) 726
BfuI GTATCC 1 cut(s) 530
BglII AGATCT 1 cut(s) 375
BisI GCNGC 4 cut(s) 428, 582, 960, 1058
BlsI GCNGC 4 cut(s) 429, 583, 961, 1059
Bme1390I CCNGG 1 cut(s) 787
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 943
BmrFI CCNGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 472, 506, 808
BmtI GCTAGC 1 cut(s) 729
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 254
BsaAI YACGTR 2 cut(s) 794, 986
BsaHI GRCGYC 2 cut(s) 5, 847
BsaI GGTCTC 1 cut(s) 1145
BsaJI CCNNGG 2 cut(s) 660, 786
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 424, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 773
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 2 cut(s) 680, 1088
Bse21I CCTNAGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 787
BseDI CCNNGG 2 cut(s) 660, 786
BseGI GGATG 2 cut(s) 487, 925
BseLI CCNNNNNNNGG 2 cut(s) 533, 773
BseMII CTCAG 4 cut(s) 99, 320, 735, 858
BseNI ACTGG 2 cut(s) 680, 1088
BseRI GAGGAG 3 cut(s) 15, 46, 989
BseSI GKGCMC 2 cut(s) 793, 985
BseXI GCAGC 4 cut(s) 439, 568, 971, 1044
BsgI GTGCAG 2 cut(s) 446, 639
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 855
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 1 cut(s) 615
BslI CCNNNNNNNGG 2 cut(s) 533, 773
BsmAI GTCTC 4 cut(s) 75, 117, 194, 1145
BsmBI CGTCTC 2 cut(s) 75, 194
BsnI GGCC 1 cut(s) 855
Bso31I GGTCTC 1 cut(s) 1145
Bsp1286I GDGCHC 2 cut(s) 793, 985
Bsp1407I TGTACA 1 cut(s) 1004
Bsp143I GATC 4 cut(s) 375, 471, 640, 685
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 4 cut(s) 1039, 1050, 1094, 1112
BspANI GGCC 1 cut(s) 855
BspCNI CTCAG 4 cut(s) 100, 319, 736, 859
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 873
BspLI GGNNCC 1 cut(s) 943
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 1 cut(s) 693
BspQI GCTCTTC 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 1145
BsrBI CCGCTC 1 cut(s) 1039
BsrFI RCCGGY 1 cut(s) 614
BsrGI TGTACA 1 cut(s) 1004
BsrI ACTGG 2 cut(s) 680, 1088
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 2 cut(s) 660, 786
BssMI GATC 4 cut(s) 375, 471, 640, 685
BssNI GRCGYC 2 cut(s) 5, 847
BssSI CACGAG 2 cut(s) 180, 971
BssT1I CCWWGG 1 cut(s) 660
Bst2BI CACGAG 2 cut(s) 180, 971
Bst2UI CCWGG 1 cut(s) 787
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 2 cut(s) 80, 487
BstACI GRCGYC 2 cut(s) 5, 847
BstAPI GCANNNNNTGC 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 1004
BstBAI YACGTR 2 cut(s) 794, 986
BstC8I GCNNGC 4 cut(s) 487, 701, 727, 1000
BstDEI CTNAG 9 cut(s) 108, 159, 213, 264, 306, 504, 744, 804, 867
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 487, 925
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 4 cut(s) 378, 474, 643, 688
BstMAI GTCTC 4 cut(s) 75, 117, 194, 1145
BstMBI GATC 4 cut(s) 375, 471, 640, 685
BstMWI GCNNNNNNNGC 3 cut(s) 11, 296, 827
BstNI CCWGG 1 cut(s) 787
BstSCI CCNGG 1 cut(s) 785
BstSLI GKGCMC 2 cut(s) 793, 985
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 4 cut(s) 439, 568, 971, 1044
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
Bsu36I CCTNAGG 1 cut(s) 159
BsuI GTATCC 1 cut(s) 530
BsuRI GGCC 1 cut(s) 855
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 487, 925
BtsIMutI CAGTG 2 cut(s) 105, 687
Cac8I GCNNGC 4 cut(s) 487, 701, 727, 1000
CciI TCATGA 1 cut(s) 873
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 1 cut(s) 102
CseI GACGC 1 cut(s) 836
Csp6I GTAC 2 cut(s) 285, 1005
CviAII CATG 6 cut(s) 460, 475, 661, 689, 874, 1169
CviQI GTAC 2 cut(s) 285, 1005
DdeI CTNAG 9 cut(s) 108, 159, 213, 264, 306, 504, 744, 804, 867
DpnI GATC 4 cut(s) 377, 473, 642, 687
DpnII GATC 4 cut(s) 375, 471, 640, 685
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 853
Eam1104I CTCTTC 2 cut(s) 80, 487
EarI CTCTTC 2 cut(s) 80, 487
Eco130I CCWWGG 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 1145
Eco47I GGWCC 1 cut(s) 102
Eco72I CACGTG 2 cut(s) 794, 986
Eco81I CCTNAGG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 785
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
Esp3I CGTCTC 2 cut(s) 75, 194
FaeI CATG 6 cut(s) 463, 478, 664, 692, 877, 1172
FalI AAGNNNNNCTT 2 cut(s) 1091, 1123
FatI CATG 6 cut(s) 459, 474, 660, 688, 873, 1168
FauI CCCGC 1 cut(s) 1119
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 4 cut(s) 428, 582, 960, 1058
FokI GGATG 2 cut(s) 494, 932
Fsp4HI GCNGC 4 cut(s) 428, 582, 960, 1058
FspBI CTAG 1 cut(s) 726
GluI GCNGC 4 cut(s) 428, 582, 960, 1058
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 1 cut(s) 855
HapII CCGG 1 cut(s) 615
HgaI GACGC 1 cut(s) 836
Hin1I GRCGYC 2 cut(s) 5, 847
Hin1II CATG 6 cut(s) 463, 478, 664, 692, 877, 1172
HincII GTYRAC 1 cut(s) 1119
HindII GTYRAC 1 cut(s) 1119
HinfI GANTC 7 cut(s) 40, 110, 123, 224, 454, 523, 572
HpaI GTTAAC 1 cut(s) 1119
HpaII CCGG 1 cut(s) 615
HphI GGTGA 2 cut(s) 899, 1160
Hpy166II GTNNAC 4 cut(s) 983, 994, 1007, 1119
Hpy188I TCNGA 3 cut(s) 18, 745, 817
Hpy188III TCNNGA 7 cut(s) 100, 120, 308, 332, 651, 767, 874
Hpy8I GTNNAC 4 cut(s) 983, 994, 1007, 1119
Hpy99I CGWCG 2 cut(s) 10, 64
HpyAV CCTTC 3 cut(s) 54, 337, 895
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 2 cut(s) 793, 985
HpyCH4V TGCA 8 cut(s) 150, 427, 438, 620, 797, 821, 983, 1060
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 296, 827
HpyF3I CTNAG 9 cut(s) 108, 159, 213, 264, 306, 504, 744, 804, 867
HpySE526I ACGT 2 cut(s) 793, 985
Hsp92I GRCGYC 2 cut(s) 5, 847
Hsp92II CATG 6 cut(s) 463, 478, 664, 692, 877, 1172
Ksp22I TGATCA 1 cut(s) 471
KspAI GTTAAC 1 cut(s) 1119
Kzo9I GATC 4 cut(s) 375, 471, 640, 685
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 4 cut(s) 334, 463, 956, 1184
Lsp1109I GCAGC 4 cut(s) 439, 568, 971, 1044
LweI GCATC 3 cut(s) 472, 506, 808
MaeI CTAG 1 cut(s) 726
MaeII ACGT 2 cut(s) 793, 985
MaeIII GTNAC 4 cut(s) 137, 511, 848, 1072
MalI GATC 4 cut(s) 377, 473, 642, 687
MbiI CCGCTC 1 cut(s) 1039
MboI GATC 4 cut(s) 375, 471, 640, 685
MboII GAAGA 7 cut(s) 57, 67, 219, 504, 635, 1111, 1133
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 2 cut(s) 793, 985
MluCI AATT 8 cut(s) 151, 189, 207, 312, 587, 735, 809, 1102
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 216, 467
MroXI GAANNNNTTC 1 cut(s) 1106
MseI TTAA 4 cut(s) 36, 195, 894, 1118
MslI CAYNNNNRTG 2 cut(s) 518, 680
MspA1I CMGCKG 2 cut(s) 518, 938
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 1 cut(s) 787
MvaI CCWGG 1 cut(s) 787
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 11, 296, 827
NcoI CCATGG 1 cut(s) 660
NdeII GATC 4 cut(s) 375, 471, 640, 685
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 6 cut(s) 463, 478, 664, 692, 877, 1172
NlaIV GGNNCC 1 cut(s) 943
NmuCI GTSAC 3 cut(s) 511, 848, 1072
OliI CACNNNNGTG 1 cut(s) 518
PagI TCATGA 1 cut(s) 873
PciSI GCTCTTC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 1106
PfeI GAWTC 6 cut(s) 40, 123, 224, 454, 523, 572
PkrI GCNGC 4 cut(s) 429, 583, 961, 1059
PleI GAGTC 1 cut(s) 118
PmaCI CACGTG 2 cut(s) 794, 986
PmlI CACGTG 2 cut(s) 794, 986
PpsI GAGTC 1 cut(s) 118
Ppu21I YACGTR 2 cut(s) 794, 986
PshBI ATTAAT 1 cut(s) 195
PsiI TTATAA 1 cut(s) 605
Psp6I CCWGG 1 cut(s) 785
PspCI CACGTG 2 cut(s) 794, 986
PspGI CCWGG 1 cut(s) 785
PspN4I GGNNCC 1 cut(s) 943
PspPI GGNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 375
PvuII CAGCTG 2 cut(s) 518, 938
RsaI GTAC 2 cut(s) 286, 1006
RsaNI GTAC 2 cut(s) 285, 1005
RseI CAYNNNNRTG 2 cut(s) 518, 680
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 4 cut(s) 36, 195, 894, 1118
SatI GCNGC 4 cut(s) 428, 582, 960, 1058
Sau3AI GATC 4 cut(s) 375, 471, 640, 685
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 787
SduI GDGCHC 2 cut(s) 793, 985
SfaNI GCATC 3 cut(s) 472, 506, 808
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 518, 680
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 8 cut(s) 151, 189, 207, 312, 587, 735, 809, 1102
SsiI CCGC 4 cut(s) 1039, 1050, 1094, 1112
SspMI CTAG 1 cut(s) 726
StyD4I CCNGG 1 cut(s) 785
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 2 cut(s) 796, 988
TaqI TCGA 3 cut(s) 89, 121, 837
TasI AATT 8 cut(s) 151, 189, 207, 312, 587, 735, 809, 1102
TatI WGTACW 1 cut(s) 1004
TfiI GAWTC 6 cut(s) 40, 123, 224, 454, 523, 572
Tru1I TTAA 4 cut(s) 36, 195, 894, 1118
Tru9I TTAA 4 cut(s) 36, 195, 894, 1118
TscAI CASTG 2 cut(s) 112, 687
TseFI GTSAC 3 cut(s) 511, 848, 1072
TseI GCWGC 4 cut(s) 427, 581, 959, 1057
Tsp45I GTSAC 3 cut(s) 511, 848, 1072
TspDTI ATGAA 2 cut(s) 635, 890
TspGWI ACGGA 3 cut(s) 22, 516, 1171
TspRI CASTG 2 cut(s) 112, 687
VneI GTGCAC 1 cut(s) 981
VpaK11BI GGWCC 1 cut(s) 102
VspI ATTAAT 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 1106
XspI CTAG 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.