FvH4_5g21390

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009863
Physical Location & Seq
Reverse (-)
12888835 .. 12893495
4661 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21390.t1

Sequence Viewer

Length: 1212 bp
ATGGCCGCCTCCCTCGTTATGCCGTCGCCTGCGTCGTCGTCATCGGCGGCAATGGCTTCGTCGCGTTCGTTTCTGTTCGCTGGCGGCCACAGGAGTCTGCTCGGCGGCGGTGAATATGGCTCCCGTGTCTACGCTCCTAAATGCGTTGAATGTGAAATGTCTGAACCCATAAACGGGAATGGGAAGCCGATTATTCCTGTTGTTAATGAGCGGACACTGCCCAAGTTCTTGGAATCAGCACGCTTGGCGAAATCGGTTAACAGAAACAGTGCCAGGATCAAATTATTTTCTGGCACAGCAAATCCTGCTCTTTCCCAGGAAATTGCTTGGTACATGGGATTGGAGCTTGGAAAGATCAACATAAAGAGGTTTGCTGATGGTGAAGTATATGTTCAGCTGGGAGAGAGTGTTAGAGGGTGTGATGTATTCTTATTGCAGCCAACCTGCCCTCCTGTCAATGAGAACCTCATGGAGCTACAAATTGTAATTGATGCATGTCGGAGGGCATCGGCCAGAAATGTTACGGCGGTTATTCCATATTTTGGATATGCCCGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATAGCGGCCAAACTGGTTGCGAACCTCGTCACCATTGCAGGGGCAGACCGTGTTCTTGCTTGTGACATTCATTCCGGGCAGTCAATAGGTTACTTTGATATACCAGTGGATCATGTATATTGCGAGCATGTTATCCTCGATTACCTAGCCAGCAAGGCAATTTGTTCTGATGATTTGGTCGTGGTATCCCCTGATGTTGGGGGAGTTGCAAGAGCACGTGCTTTTGCAAAAAAACTATCAGATGCCCCTTTAGCCATTATAGACAAAAGGCGTCACGGACACAATATTGCTGAGGTGATGAACTTGATTGGCGATGTAAAGGGAAAAGTTGCAGTGATGGTGGATGATATGATTGACACTGCTGGGACAATCTCAAAAGGCGCAGCCCTGTTGCATGAAGAGGGTGCAAGGGAAGTCTATGCATGTTGTACCCATGCTGTATTTAGCCCTCCTGCAATTGAAAGGTTATCGAGTGGCTTGTTTCAAGAGGTTATTGTAACAAACACAATCCCTGTTGCAGAGAAGAATTACTTCCCTCAGTTGACTATCCTTTCAGTAGCAAACTTGTTGGGTGAAACCATTTGGCGTGTTCACGATGATTCTTCTGTGAGTAGCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

404

Amino Acids

43.35

Weight (kDa)

6.52

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 93 - 209 1e-49 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 253 - 341 1.4e-16 Phosphoribosyl transferase domain
Pribosyl_synth PF14572 295 - 402 2.5e-24 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 542
AccBSI CCGCTC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 64
AciI CCGC 8 cut(s) 6, 47, 84, 105, 108, 211, 527, 590
AclWI GGATC 2 cut(s) 284, 702
AcoI YGGCCR 4 cut(s) 3, 85, 510, 591
AcvI CACGTG 1 cut(s) 803
AcyI GRCGYC 1 cut(s) 856
AfaI GTAC 2 cut(s) 332, 1015
AfiI CCNNNNNNNGG 5 cut(s) 173, 174, 542, 624, 782
AgsI TTSAA 3 cut(s) 149, 1046, 1070
AjnI CCWGG 2 cut(s) 272, 315
AluBI AGCT 4 cut(s) 346, 397, 475, 557
AluI AGCT 4 cut(s) 346, 397, 475, 557
Alw21I GWGCWC 1 cut(s) 802
AlwI GGATC 2 cut(s) 284, 702
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 4 cut(s) 3, 85, 510, 591
ApeKI GCWGC 2 cut(s) 436, 968
Asp700I GAANNNNTTC 1 cut(s) 1115
AspLEI GCGC 1 cut(s) 968
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 5 cut(s) 122, 392, 607, 892, 1169
AvaI CYCGRG 1 cut(s) 552
BbrPI CACGTG 1 cut(s) 803
Bbv12I GWGCWC 1 cut(s) 802
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 2 cut(s) 448, 980
BccI CCATC 2 cut(s) 371, 916
BceAI ACGGC 2 cut(s) 7, 540
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 2 cut(s) 274, 317
BciVI GTATCC 1 cut(s) 781
BcnI CCSGG 1 cut(s) 661
BfaI CTAG 1 cut(s) 731
BfuAI ACCTGC 1 cut(s) 452
BfuI GTATCC 1 cut(s) 781
BglI GCCNNNNNGGC 1 cut(s) 740
BisI GCNGC 7 cut(s) 6, 48, 85, 106, 437, 591, 969
BlsI GCNGC 7 cut(s) 7, 49, 86, 107, 438, 592, 970
Bme1390I CCNGG 3 cut(s) 274, 317, 661
BmeT110I CYCGRG 1 cut(s) 552
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 3 cut(s) 274, 317, 661
BmsI GCATC 3 cut(s) 481, 515, 817
Bpu10I CCTNAGC 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 661
BsaAI YACGTR 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 856
BsaJI CCNNGG 1 cut(s) 315
BsaXI ACNNNNNCTCC 4 cut(s) 393, 423, 433, 463
Bsc4I CCNNNNNNNGG 5 cut(s) 173, 174, 542, 624, 782
Bse1I ACTGG 2 cut(s) 603, 689
Bse3DI GCAATG 2 cut(s) 57, 618
BseBI CCWGG 2 cut(s) 274, 317
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 934
BseLI CCNNNNNNNGG 5 cut(s) 173, 174, 542, 624, 782
BseMI GCAATG 2 cut(s) 57, 618
BseMII CTCAG 2 cut(s) 867, 1136
BseNI ACTGG 2 cut(s) 603, 689
BseXI GCAGC 2 cut(s) 448, 980
BseYI CCCAGC 2 cut(s) 397, 947
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 4 cut(s) 5, 87, 512, 593
BsiHKAI GWGCWC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 1 cut(s) 660
BslFI GGGAC 1 cut(s) 964
BslI CCNNNNNNNGG 5 cut(s) 173, 174, 542, 624, 782
BsmFI GGGAC 1 cut(s) 964
BsnI GGCC 4 cut(s) 5, 87, 512, 593
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 802
Bsp143I GATC 3 cut(s) 276, 354, 694
BspACI CCGC 8 cut(s) 6, 47, 84, 105, 108, 211, 527, 590
BspANI GGCC 4 cut(s) 5, 87, 512, 593
BspCNI CTCAG 2 cut(s) 868, 1135
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 2 cut(s) 284, 702
BsrBI CCGCTC 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 57, 618
BsrI ACTGG 2 cut(s) 603, 689
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 3 cut(s) 276, 354, 694
BssNI GRCGYC 1 cut(s) 856
Bst2UI CCWGG 2 cut(s) 274, 317
Bst4CI ACNGT 2 cut(s) 269, 635
Bst6I CTCTTC 1 cut(s) 978
BstACI GRCGYC 1 cut(s) 856
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 5 cut(s) 30, 82, 241, 710, 736
BstDEI CTNAG 2 cut(s) 876, 1122
BstF5I GGATG 1 cut(s) 934
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 968
BstKTI GATC 3 cut(s) 279, 357, 697
BstMBI GATC 3 cut(s) 276, 354, 694
BstMWI GCNNNNNNNGC 6 cut(s) 53, 217, 245, 305, 740, 836
BstNI CCWGG 2 cut(s) 274, 317
BstNSI RCATGY 3 cut(s) 498, 716, 1011
BstSCI CCNGG 3 cut(s) 272, 315, 659
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 448, 980
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 781
BsuRI GGCC 4 cut(s) 5, 87, 512, 593
BtgZI GCGATG 1 cut(s) 912
BtsCI GGATG 1 cut(s) 934
BtsI GCAGTG 3 cut(s) 215, 924, 942
BtsIMutI CAGTG 5 cut(s) 215, 274, 696, 924, 942
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 5 cut(s) 30, 82, 241, 710, 736
CfoI GCGC 1 cut(s) 968
CseI GACGC 2 cut(s) 21, 845
Csp6I GTAC 2 cut(s) 331, 1014
CviAII CATG 8 cut(s) 334, 469, 495, 698, 713, 980, 1008, 1019
CviQI GTAC 2 cut(s) 331, 1014
DdeI CTNAG 2 cut(s) 876, 1122
DpnI GATC 3 cut(s) 278, 356, 696
DpnII GATC 3 cut(s) 276, 354, 694
EaeI YGGCCR 4 cut(s) 3, 85, 510, 591
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
Eco72I CACGTG 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 552
EcoRII CCWGG 2 cut(s) 272, 315
EcoT22I ATGCAT 2 cut(s) 496, 1009
FaeI CATG 8 cut(s) 337, 472, 498, 701, 716, 983, 1011, 1022
FalI AAGNNNNNCTT 2 cut(s) 1100, 1132
FaqI GGGAC 1 cut(s) 964
FatI CATG 8 cut(s) 333, 468, 494, 697, 712, 979, 1007, 1018
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 7 cut(s) 6, 48, 85, 106, 437, 591, 969
FokI GGATG 1 cut(s) 941
Fsp4HI GCNGC 7 cut(s) 6, 48, 85, 106, 437, 591, 969
FspBI CTAG 1 cut(s) 731
GlaI GCGC 1 cut(s) 967
GluI GCNGC 7 cut(s) 6, 48, 85, 106, 437, 591, 969
GsaI CCCAGC 2 cut(s) 401, 951
HaeIII GGCC 4 cut(s) 5, 87, 512, 593
HapII CCGG 1 cut(s) 660
HgaI GACGC 2 cut(s) 21, 845
HhaI GCGC 1 cut(s) 968
Hin1I GRCGYC 1 cut(s) 856
Hin1II CATG 8 cut(s) 337, 472, 498, 701, 716, 983, 1011, 1022
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HincII GTYRAC 2 cut(s) 259, 1128
HindII GTYRAC 2 cut(s) 259, 1128
HinfI GANTC 5 cut(s) 94, 233, 568, 581, 1184
HpaI GTTAAC 1 cut(s) 259
HpaII CCGG 1 cut(s) 660
HphI GGTGA 5 cut(s) 122, 392, 607, 892, 1169
Hpy166II GTNNAC 4 cut(s) 130, 259, 1128, 1177
Hpy188I TCNGA 4 cut(s) 163, 501, 754, 826
Hpy188III TCNNGA 2 cut(s) 1070, 1178
Hpy8I GTNNAC 4 cut(s) 130, 259, 1128, 1177
Hpy99I CGWCG 4 cut(s) 28, 37, 40, 64
HpyCH4III ACNGT 2 cut(s) 269, 635
HpyCH4IV ACGT 1 cut(s) 802
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 217, 245, 305, 740, 836
HpyF3I CTNAG 2 cut(s) 876, 1122
HpySE526I ACGT 1 cut(s) 802
Hsp92I GRCGYC 1 cut(s) 856
Hsp92II CATG 8 cut(s) 337, 472, 498, 701, 716, 983, 1011, 1022
HspAI GCGC 1 cut(s) 966
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 276, 354, 694
LmnI GCTCC 4 cut(s) 125, 139, 343, 472
Lsp1109I GCAGC 2 cut(s) 448, 980
LweI GCATC 3 cut(s) 481, 515, 817
MaeI CTAG 1 cut(s) 731
MaeII ACGT 1 cut(s) 802
MaeIII GTNAC 6 cut(s) 520, 613, 647, 674, 857, 1081
MalI GATC 3 cut(s) 278, 356, 696
MbiI CCGCTC 1 cut(s) 211
MboI GATC 3 cut(s) 276, 354, 694
MboII GAAGA 3 cut(s) 995, 1120, 1179
MfeI CAATTG 1 cut(s) 1041
MhlI GDGCHC 1 cut(s) 802
MluCI AATT 7 cut(s) 281, 321, 480, 486, 744, 1041, 1111
MlyI GAGTC 2 cut(s) 103, 562
MmeI TCCRAC 1 cut(s) 479
Mph1103I ATGCAT 2 cut(s) 496, 1009
MroXI GAANNNNTTC 1 cut(s) 1115
MseI TTAA 2 cut(s) 204, 258
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 1 cut(s) 660
MspR9I CCNGG 3 cut(s) 274, 317, 661
MunI CAATTG 1 cut(s) 1041
MvaI CCWGG 2 cut(s) 274, 317
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 6 cut(s) 53, 217, 245, 305, 740, 836
NciI CCSGG 1 cut(s) 661
NdeII GATC 3 cut(s) 276, 354, 694
NlaIII CATG 8 cut(s) 337, 472, 498, 701, 716, 983, 1011, 1022
NlaIV GGNNCC 1 cut(s) 121
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 3 cut(s) 613, 647, 857
NsiI ATGCAT 2 cut(s) 496, 1009
NspI RCATGY 3 cut(s) 498, 716, 1011
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 65
PdmI GAANNNNTTC 1 cut(s) 1115
PfeI GAWTC 3 cut(s) 233, 581, 1184
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 7 cut(s) 7, 49, 86, 107, 438, 592, 970
PleI GAGTC 2 cut(s) 102, 562
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
PpsI GAGTC 2 cut(s) 102, 562
Ppu21I YACGTR 1 cut(s) 803
Psp6I CCWGG 2 cut(s) 272, 315
PspCI CACGTG 1 cut(s) 803
PspFI CCCAGC 2 cut(s) 397, 947
PspGI CCWGG 2 cut(s) 272, 315
PspN4I GGNNCC 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 2 cut(s) 332, 1015
RsaNI GTAC 2 cut(s) 331, 1014
SaqAI TTAA 2 cut(s) 204, 258
SatI GCNGC 7 cut(s) 6, 48, 85, 106, 437, 591, 969
Sau3AI GATC 3 cut(s) 276, 354, 694
SchI GAGTC 2 cut(s) 103, 562
ScrFI CCNGG 3 cut(s) 274, 317, 661
SduI GDGCHC 1 cut(s) 802
SfaNI GCATC 3 cut(s) 481, 515, 817
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
Sse9I AATT 7 cut(s) 281, 321, 480, 486, 744, 1041, 1111
SsiI CCGC 8 cut(s) 6, 47, 84, 105, 108, 211, 527, 590
SspI AATATT 1 cut(s) 871
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 3 cut(s) 272, 315, 659
TaaI ACNGT 2 cut(s) 269, 635
TaiI ACGT 1 cut(s) 805
TaqI TCGA 2 cut(s) 723, 1055
TasI AATT 7 cut(s) 281, 321, 480, 486, 744, 1041, 1111
TauI GCSGC 5 cut(s) 8, 50, 87, 108, 593
TfiI GAWTC 3 cut(s) 233, 581, 1184
Tru1I TTAA 2 cut(s) 204, 258
Tru9I TTAA 2 cut(s) 204, 258
TscAI CASTG 5 cut(s) 222, 274, 696, 924, 949
TseFI GTSAC 3 cut(s) 613, 647, 857
TseI GCWGC 2 cut(s) 436, 968
Tsp45I GTSAC 3 cut(s) 613, 647, 857
TspDTI ATGAA 3 cut(s) 644, 899, 996
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 5 cut(s) 222, 274, 696, 924, 949
Van91I CCANNNNNTGG 1 cut(s) 542
XceI RCATGY 3 cut(s) 498, 716, 1011
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 1115
XspI CTAG 1 cut(s) 731
Zsp2I ATGCAT 2 cut(s) 496, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.