Rh7CG255400

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009863
Physical Location & Seq
Reverse (-)
24714942 .. 24718420
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG255400.1

Sequence Viewer

Length: 1056 bp
ATGGCTGAACCAATAAACGGAAATGGGAAGCCGATTATTCCTGTTGTGAACGAGCGGACACTGCCCAAGTTCTTGGAATCGGCACGGTTGGCGAAATCGGTTAACAGAAGTAGTTCCAGGCTCAAATTGTTTTCTGGCACAGCAAATCCTGCTCTTTCCCAGGAAATTGCTTGGTACATGGGTTTGGAGCTTGGAAAGATCAACATAAAGAGGTTTGCTGATGGTGAAGTATATGTTCAGTTGGGAGAGAGTGTTAGAGGATGTGATGTATTCTTATTGCAGCCAACCTGCCCTCCTGTCAATGAGAACCTCATGGAGCTACAAATTATAATTGATGCATGTCGGAGGGCATCGGCCAGAAATATTACTACAGTTATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATAGCAGCCAAACTGGTTGCAAACCTTGTCACTATGGCAGGTGCAGACCGTGTTCTTGCTTGTGACATTCATTCCGGGCAGTCAATAGGTTACTTTGATATACCAGTGGATCATGTATATTGTGAGCATGTTATCCTTGATTACCTAGCCAGCAAGGCAATTTGTTCTGATGATTTGGTGGTGGTATCCCCTGATGTTGGGGGAGTTGCAAGAGCACGTGCTTTTGCAAAGAAACTATCTGATGCACCTTTAGCCATCATAGACAAAAGGCGTCATGGACACAATATTGCTGAGGTGATGAACTTGATTGGTGATGTAAAAGGAAAAGTTGCAGTGATGGTGGATGATATGATTGACACTGCTGGGACAATCTCAAAAGGCGCAGCCCTGTTACATGAAGAGGGGGCAAGGGAAGTCTATGCATGCTGTACCCATGCTGTGTTTAGCCCTCCTGCAATTGAAAGGTTATCGAGTGGCCTGTTTCAAGAGGTGATTGTAACAAACACAATCCCTGTTGCAGAGAAGAATTACTTCCCTCAGTTGACTATACTTTCAGTAGCTAACCTGTTGGGTGAGACCATTTGGCGTGTTCACGATGATTCTTCTGTGAGTAGCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

351

Amino Acids

38.15

Weight (kDa)

6.26

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 41 - 157 7e-50 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 201 - 289 1.1e-16 Phosphoribosyl transferase domain
Pribosyl_synth PF14572 243 - 350 1.9e-24 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 2 cut(s) 296, 458
AccB7I CCANNNNNTGG 1 cut(s) 386
AccBSI CCGCTC 1 cut(s) 55
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 354
AcvI CACGTG 1 cut(s) 647
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 2 cut(s) 176, 859
AfiI CCNNNNNNNGG 3 cut(s) 17, 386, 626
AgsI TTSAA 2 cut(s) 890, 914
AjnI CCWGG 2 cut(s) 116, 159
AluBI AGCT 4 cut(s) 190, 319, 401, 989
AluI AGCT 4 cut(s) 190, 319, 401, 989
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 998
AlwI GGATC 1 cut(s) 546
AoxI GGCC 2 cut(s) 354, 904
ApeKI GCWGC 3 cut(s) 280, 434, 812
Asp700I GAANNNNTTC 2 cut(s) 112, 959
AspLEI GCGC 1 cut(s) 812
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 5 cut(s) 236, 736, 752, 931, 1013
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BbrPI CACGTG 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 646
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 3 cut(s) 292, 446, 824
BccI CCATC 3 cut(s) 215, 692, 760
BciT130I CCWGG 2 cut(s) 118, 161
BciVI GTATCC 1 cut(s) 625
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 998
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 369
BfuAI ACCTGC 2 cut(s) 296, 458
BfuI GTATCC 1 cut(s) 625
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 3 cut(s) 281, 435, 813
BlsI GCNGC 3 cut(s) 282, 436, 814
Bme1390I CCNGG 3 cut(s) 118, 161, 505
BmrFI CCNGG 3 cut(s) 118, 161, 505
BmsI GCATC 3 cut(s) 325, 359, 661
Bpu10I CCTNAGC 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 647
BsaHI GRCGYC 1 cut(s) 700
BsaI GGTCTC 1 cut(s) 998
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 4 cut(s) 237, 267, 277, 307
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 386, 626
Bse1I ACTGG 2 cut(s) 447, 533
BseBI CCWGG 2 cut(s) 118, 161
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 266, 778
BseLI CCNNNNNNNGG 3 cut(s) 17, 386, 626
BseMII CTCAG 2 cut(s) 711, 980
BseNI ACTGG 2 cut(s) 447, 533
BseXI GCAGC 3 cut(s) 292, 446, 824
BseYI CCCAGC 1 cut(s) 791
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 2 cut(s) 356, 906
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 808
BslI CCNNNNNNNGG 3 cut(s) 17, 386, 626
BsmAI GTCTC 1 cut(s) 998
BsmFI GGGAC 1 cut(s) 808
BsnI GGCC 2 cut(s) 356, 906
Bso31I GGTCTC 1 cut(s) 998
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 2 cut(s) 198, 538
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 356, 906
BspCNI CTCAG 2 cut(s) 712, 979
BspMI ACCTGC 2 cut(s) 296, 458
BspPI GGATC 1 cut(s) 546
BspTNI GGTCTC 1 cut(s) 998
BsrBI CCGCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 447, 533
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 198, 538
BssNI GRCGYC 1 cut(s) 700
Bst2UI CCWGG 2 cut(s) 118, 161
Bst4CI ACNGT 3 cut(s) 87, 373, 479
Bst6I CTCTTC 1 cut(s) 822
BstACI GRCGYC 1 cut(s) 700
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 580, 853
BstDEI CTNAG 2 cut(s) 720, 966
BstF5I GGATG 2 cut(s) 266, 778
BstHHI GCGC 1 cut(s) 812
BstKTI GATC 2 cut(s) 201, 541
BstMAI GTCTC 1 cut(s) 998
BstMBI GATC 2 cut(s) 198, 538
BstMWI GCNNNNNNNGC 5 cut(s) 61, 89, 149, 584, 680
BstNI CCWGG 2 cut(s) 118, 161
BstNSI RCATGY 3 cut(s) 342, 560, 855
BstSCI CCNGG 3 cut(s) 116, 159, 503
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 3 cut(s) 292, 446, 824
BstXI CCANNNNNNTGG 1 cut(s) 73
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 2 cut(s) 356, 906
BtsCI GGATG 2 cut(s) 266, 778
BtsI GCAGTG 3 cut(s) 59, 768, 786
BtsIMutI CAGTG 4 cut(s) 59, 540, 768, 786
BveI ACCTGC 2 cut(s) 296, 458
Cac8I GCNNGC 2 cut(s) 580, 853
CfoI GCGC 1 cut(s) 812
CseI GACGC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 175, 858
CviAII CATG 9 cut(s) 178, 313, 339, 542, 557, 704, 824, 852, 863
CviQI GTAC 2 cut(s) 175, 858
DdeI CTNAG 2 cut(s) 720, 966
DpnI GATC 2 cut(s) 200, 540
DpnII GATC 2 cut(s) 198, 538
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Eco31I GGTCTC 1 cut(s) 998
Eco72I CACGTG 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 116, 159
EcoT22I ATGCAT 2 cut(s) 340, 853
FaeI CATG 9 cut(s) 181, 316, 342, 545, 560, 707, 827, 855, 866
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FaqI GGGAC 1 cut(s) 808
FatI CATG 9 cut(s) 177, 312, 338, 541, 556, 703, 823, 851, 862
Fnu4HI GCNGC 3 cut(s) 281, 435, 813
FokI GGATG 2 cut(s) 273, 785
Fsp4HI GCNGC 3 cut(s) 281, 435, 813
FspBI CTAG 1 cut(s) 575
GlaI GCGC 1 cut(s) 811
GluI GCNGC 3 cut(s) 281, 435, 813
GsaI CCCAGC 1 cut(s) 795
HaeIII GGCC 2 cut(s) 356, 906
HapII CCGG 1 cut(s) 504
HgaI GACGC 1 cut(s) 689
HhaI GCGC 1 cut(s) 812
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 9 cut(s) 181, 316, 342, 545, 560, 707, 827, 855, 866
Hin6I GCGC 1 cut(s) 810
HinP1I GCGC 1 cut(s) 810
HincII GTYRAC 2 cut(s) 103, 972
HindII GTYRAC 2 cut(s) 103, 972
HinfI GANTC 4 cut(s) 77, 412, 425, 1028
HpaI GTTAAC 1 cut(s) 103
HpaII CCGG 1 cut(s) 504
HphI GGTGA 5 cut(s) 236, 736, 752, 931, 1013
Hpy166II GTNNAC 4 cut(s) 49, 103, 972, 1021
Hpy188I TCNGA 3 cut(s) 345, 598, 670
Hpy188III TCNNGA 2 cut(s) 914, 1022
Hpy8I GTNNAC 4 cut(s) 49, 103, 972, 1021
HpyCH4III ACNGT 3 cut(s) 87, 373, 479
HpyCH4IV ACGT 1 cut(s) 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 89, 149, 584, 680
HpyF3I CTNAG 2 cut(s) 720, 966
HpySE526I ACGT 1 cut(s) 646
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 9 cut(s) 181, 316, 342, 545, 560, 707, 827, 855, 866
HspAI GCGC 1 cut(s) 810
KspAI GTTAAC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 198, 538
LmnI GCTCC 2 cut(s) 187, 316
Lsp1109I GCAGC 3 cut(s) 292, 446, 824
LweI GCATC 3 cut(s) 325, 359, 661
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 5 cut(s) 457, 491, 518, 819, 925
MalI GATC 2 cut(s) 200, 540
MbiI CCGCTC 1 cut(s) 55
MboI GATC 2 cut(s) 198, 538
MboII GAAGA 3 cut(s) 839, 964, 1023
MfeI CAATTG 1 cut(s) 885
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 7 cut(s) 125, 165, 324, 330, 588, 885, 955
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 323
Mph1103I ATGCAT 2 cut(s) 340, 853
MroXI GAANNNNTTC 2 cut(s) 112, 959
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 3 cut(s) 118, 161, 505
MunI CAATTG 1 cut(s) 885
MvaI CCWGG 2 cut(s) 118, 161
MwoI GCNNNNNNNGC 5 cut(s) 61, 89, 149, 584, 680
NciI CCSGG 1 cut(s) 505
NdeII GATC 2 cut(s) 198, 538
NlaIII CATG 9 cut(s) 181, 316, 342, 545, 560, 707, 827, 855, 866
NmuCI GTSAC 2 cut(s) 457, 491
NsiI ATGCAT 2 cut(s) 340, 853
NspI RCATGY 3 cut(s) 342, 560, 855
PaeI GCATGC 1 cut(s) 855
PaqCI CACCTGC 1 cut(s) 458
PdmI GAANNNNTTC 2 cut(s) 112, 959
PfeI GAWTC 3 cut(s) 77, 425, 1028
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 3 cut(s) 282, 436, 814
PleI GAGTC 1 cut(s) 406
PmaCI CACGTG 1 cut(s) 647
PmlI CACGTG 1 cut(s) 647
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 647
PsiI TTATAA 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 116, 159
PspCI CACGTG 1 cut(s) 647
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 2 cut(s) 116, 159
RsaI GTAC 2 cut(s) 176, 859
RsaNI GTAC 2 cut(s) 175, 858
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 3 cut(s) 281, 435, 813
Sau3AI GATC 2 cut(s) 198, 538
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 3 cut(s) 118, 161, 505
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 3 cut(s) 325, 359, 661
SfcI CTRYAG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
SphI GCATGC 1 cut(s) 855
Sse9I AATT 7 cut(s) 125, 165, 324, 330, 588, 885, 955
SsiI CCGC 1 cut(s) 55
SspI AATATT 2 cut(s) 364, 715
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 116, 159, 503
TaaI ACNGT 3 cut(s) 87, 373, 479
TaiI ACGT 1 cut(s) 649
TaqI TCGA 1 cut(s) 899
TasI AATT 7 cut(s) 125, 165, 324, 330, 588, 885, 955
TfiI GAWTC 3 cut(s) 77, 425, 1028
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 4 cut(s) 66, 540, 768, 793
TseFI GTSAC 2 cut(s) 457, 491
TseI GCWGC 3 cut(s) 280, 434, 812
Tsp45I GTSAC 2 cut(s) 457, 491
TspDTI ATGAA 3 cut(s) 488, 743, 840
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 4 cut(s) 66, 540, 768, 793
Van91I CCANNNNNTGG 1 cut(s) 386
XceI RCATGY 3 cut(s) 342, 560, 855
XmnI GAANNNNTTC 2 cut(s) 112, 959
XspI CTAG 1 cut(s) 575
Zsp2I ATGCAT 2 cut(s) 340, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.