Rmu_sc0014960.1_g000001

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014960.1
OG0009863
Physical Location & Seq
Reverse (-)
1 .. 2027
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014960.1_g000001.1.cds

Sequence Viewer

Length: 723 bp
atggctgaaccaataaacggaaatgggaagccgattattcctgttgtgaacgagcggacactgcccaagttcttggaatcggcacggttggcgaaatcggttaacagaagtagttccaggctcaaattgttttctggcacagcaaatcctgctctttcccaggaaattgcttggtacatgggtttggagcttggaaagatcaacataaagaggtttgctgatggtgaagtatatgttcagttgggagagagtgttagaggatgtgatgtattcttattgcagccaacctgccctcctgtcaatgagaacctcatggagctacaaattataattgatgcatgtcggagggcatcggccagaaatattactgcagttattccatattttggatatgccagagctgatagaaagactcaagggcgtgaatccatagcagccaaactggttgcaaacctcgtcactatggcaggtgcagaccgtgttcttgcttgtgacattcattccgggcagtcaataggttactttgatataccagtggatcatgtatattgtgagcatgttatccttgattacctagccagcaaggcaatttgttctgatgatttggtggtggtatcccctgatgttgggggagttgcaagagcacgtgcttttgcaaagaaactatctgatgcacctttagccatcatagacaaaaggcgtcatggacacaatattgctgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

241

Amino Acids

26.27

Weight (kDa)

8.5

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 2 cut(s) 296, 458
AccB7I CCANNNNNTGG 1 cut(s) 386
AccBSI CCGCTC 1 cut(s) 55
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 354
AcvI CACGTG 1 cut(s) 647
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 17, 386, 626
AjnI CCWGG 2 cut(s) 116, 159
AluBI AGCT 3 cut(s) 190, 319, 401
AluI AGCT 3 cut(s) 190, 319, 401
Alw21I GWGCWC 1 cut(s) 646
AlwI GGATC 1 cut(s) 546
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 280, 434
Asp700I GAANNNNTTC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BbrPI CACGTG 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 2 cut(s) 292, 446
BccI CCATC 2 cut(s) 215, 692
BciT130I CCWGG 2 cut(s) 118, 161
BciVI GTATCC 1 cut(s) 625
BcnI CCSGG 1 cut(s) 505
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 369
BfuAI ACCTGC 2 cut(s) 296, 458
BfuI GTATCC 1 cut(s) 625
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 2 cut(s) 281, 435
BlsI GCNGC 2 cut(s) 282, 436
Bme1390I CCNGG 3 cut(s) 118, 161, 505
BmrFI CCNGG 3 cut(s) 118, 161, 505
BmsI GCATC 3 cut(s) 325, 359, 661
BpuEI CTTGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 647
BsaHI GRCGYC 1 cut(s) 700
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 4 cut(s) 237, 267, 277, 307
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 386, 626
Bse1I ACTGG 2 cut(s) 447, 533
BseBI CCWGG 2 cut(s) 118, 161
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 3 cut(s) 17, 386, 626
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 2 cut(s) 447, 533
BseXI GCAGC 2 cut(s) 292, 446
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 504
BslI CCNNNNNNNGG 3 cut(s) 17, 386, 626
BsnI GGCC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 2 cut(s) 198, 538
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 712
BspMAI CTGCAG 1 cut(s) 373
BspMI ACCTGC 2 cut(s) 296, 458
BspPI GGATC 1 cut(s) 546
BsrBI CCGCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 447, 533
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 198, 538
BssNI GRCGYC 1 cut(s) 700
Bst2UI CCWGG 2 cut(s) 118, 161
Bst4CI ACNGT 2 cut(s) 87, 479
BstACI GRCGYC 1 cut(s) 700
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 1 cut(s) 720
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 2 cut(s) 201, 541
BstMBI GATC 2 cut(s) 198, 538
BstMWI GCNNNNNNNGC 5 cut(s) 61, 89, 149, 584, 680
BstNI CCWGG 2 cut(s) 118, 161
BstNSI RCATGY 2 cut(s) 342, 560
BstSCI CCNGG 3 cut(s) 116, 159, 503
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 292, 446
BstXI CCANNNNNNTGG 1 cut(s) 73
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 1 cut(s) 356
BtsCI GGATG 1 cut(s) 266
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 540
BveI ACCTGC 2 cut(s) 296, 458
Cac8I GCNNGC 1 cut(s) 580
CseI GACGC 1 cut(s) 689
Csp6I GTAC 1 cut(s) 175
CviAII CATG 6 cut(s) 178, 313, 339, 542, 557, 704
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 720
DpnI GATC 2 cut(s) 200, 540
DpnII GATC 2 cut(s) 198, 538
EaeI YGGCCR 1 cut(s) 354
Eco72I CACGTG 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 116, 159
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 6 cut(s) 181, 316, 342, 545, 560, 707
FatI CATG 6 cut(s) 177, 312, 338, 541, 556, 703
Fnu4HI GCNGC 2 cut(s) 281, 435
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 2 cut(s) 281, 435
FspBI CTAG 1 cut(s) 575
GluI GCNGC 2 cut(s) 281, 435
HaeIII GGCC 1 cut(s) 356
HapII CCGG 1 cut(s) 504
HgaI GACGC 1 cut(s) 689
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 6 cut(s) 181, 316, 342, 545, 560, 707
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 3 cut(s) 77, 412, 425
HpaI GTTAAC 1 cut(s) 103
HpaII CCGG 1 cut(s) 504
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 49, 103
Hpy188I TCNGA 3 cut(s) 345, 598, 670
Hpy8I GTNNAC 2 cut(s) 49, 103
HpyCH4III ACNGT 2 cut(s) 87, 479
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 8 cut(s) 280, 338, 371, 449, 473, 638, 656, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 89, 149, 584, 680
HpyF3I CTNAG 1 cut(s) 720
HpySE526I ACGT 1 cut(s) 646
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 6 cut(s) 181, 316, 342, 545, 560, 707
KspAI GTTAAC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 198, 538
LmnI GCTCC 2 cut(s) 187, 316
Lsp1109I GCAGC 2 cut(s) 292, 446
LweI GCATC 3 cut(s) 325, 359, 661
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 3 cut(s) 457, 491, 518
MalI GATC 2 cut(s) 200, 540
MbiI CCGCTC 1 cut(s) 55
MboI GATC 2 cut(s) 198, 538
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 5 cut(s) 125, 165, 324, 330, 588
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 6 cut(s) 204, 251, 303, 320, 339, 464
Mph1103I ATGCAT 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 3 cut(s) 118, 161, 505
MvaI CCWGG 2 cut(s) 118, 161
MwoI GCNNNNNNNGC 5 cut(s) 61, 89, 149, 584, 680
NciI CCSGG 1 cut(s) 505
NdeII GATC 2 cut(s) 198, 538
NlaIII CATG 6 cut(s) 181, 316, 342, 545, 560, 707
NmuCI GTSAC 2 cut(s) 457, 491
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 2 cut(s) 342, 560
PaqCI CACCTGC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 77, 425
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 2 cut(s) 282, 436
PleI GAGTC 1 cut(s) 406
PmaCI CACGTG 1 cut(s) 647
PmlI CACGTG 1 cut(s) 647
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 647
PsiI TTATAA 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 116, 159
PspCI CACGTG 1 cut(s) 647
PspGI CCWGG 2 cut(s) 116, 159
PstI CTGCAG 1 cut(s) 373
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 281, 435
Sau3AI GATC 2 cut(s) 198, 538
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 3 cut(s) 118, 161, 505
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 3 cut(s) 325, 359, 661
SfcI CTRYAG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 5 cut(s) 125, 165, 324, 330, 588
SsiI CCGC 1 cut(s) 55
SspI AATATT 2 cut(s) 364, 715
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 116, 159, 503
TaaI ACNGT 2 cut(s) 87, 479
TaiI ACGT 1 cut(s) 649
TasI AATT 5 cut(s) 125, 165, 324, 330, 588
TfiI GAWTC 2 cut(s) 77, 425
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 2 cut(s) 66, 540
TseFI GTSAC 2 cut(s) 457, 491
TseI GCWGC 2 cut(s) 280, 434
Tsp45I GTSAC 2 cut(s) 457, 491
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 2 cut(s) 66, 540
Van91I CCANNNNNTGG 1 cut(s) 386
XceI RCATGY 2 cut(s) 342, 560
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 575
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.