AT2G35390

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009863
Physical Location & Seq
Reverse (-)
14895248 .. 14897882
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35390.2

Sequence Viewer

Length: 1059 bp
ATGCCGGAGTCATTGAATGTGGGAAACGGGAATCCAAGTATCCCAATTATTAATGAGAGGACACTTCCAAAGTTCTTGGAATCTGCTCGTATGGAGAAATCAGTCAATAGAACCAATACAAGGTTGAAGTTGTTCTCTGGTACTGCAAATCCAGCACTTGCTCAGGAAATTGCTTGGTATATGGGCTTGGATCTTGGCAAGGTTAATATTAAGAGGTTTGCTGATGGAGAGATCTATGTTCAGCTACAAGAGAGCGTTAGGGGATGTGACGTCTATTTGGTGCAGCCTACTTGCACTCCCACTAATGAGAATCTCATGGAGCTTTTGATTATGGTAGATGCTTGCCGAAGAGCATCAGCTAAGAAAGTTACAGCTGTGATTCCGTATTTTGGATATGCAAGAGCTGACAGGAAGACACAAGGGCGTGAATCCATTGCTGCCAAATTGGTTGCAAATCTTATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGATTTGGTAGTGGTTTCTCCTGATGTTGGTGGAGTAGCCAGGGCCCGCGCTTTTGCAAAGAAATTATCAGATGCACCACTTGCCATTGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAGGTCATGAACCTAATTGGTGATGTAAGAGGGAAGGTGGCAATAATGGTGGATGATATGATTGATACTGCTGGAACCATTGTAAAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAGGTATATGCGTGCTGCACACACGCTGTTTTCAGCCCGCCAGCGATAGAGCGATTATCAGGGGGTTTGCTGCAAGAAGTGATAGTGACAAACACATTACCTGTAGCAGAGAAGAATTACTTCCCGCAGTTAACAATATTATCAGTGGCTAATCTCCTGGGTGAGACCATTTGGCGTGTGCATGATGATAGTTCCGTCAGTAGCATTTTCCTTTGA

Protein Analysis

352

Amino Acids

38.27

Weight (kDa)

6.11

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 93 - 209 1.4e-52 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 249 - 341 4.1e-17 Phosphoribosyl transferase domain
Pribosyl_synth PF14572 294 - 402 5.6e-25 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 536
AatII GACGTC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 651
AciI CCGC 3 cut(s) 649, 881, 968
AclWI GGATC 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 142, 551
AfiI CCNNNNNNNGG 3 cut(s) 120, 389, 629
AgsI TTSAA 2 cut(s) 16, 127
AjnI CCWGG 3 cut(s) 641, 828, 999
AluBI AGCT 7 cut(s) 244, 322, 359, 374, 404, 470, 818
AluI AGCT 7 cut(s) 244, 322, 359, 374, 404, 470, 818
Alw21I GWGCWC 1 cut(s) 841
Alw26I GTCTC 1 cut(s) 1001
AlwI GGATC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 840
AoxI GGCC 1 cut(s) 645
ApaI GGGCCC 1 cut(s) 649
ApeKI GCWGC 5 cut(s) 283, 437, 815, 858, 913
AseI ATTAAT 1 cut(s) 51
Asp700I GAANNNNTTC 2 cut(s) 131, 962
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 2 cut(s) 645, 646
AsuHPI GGTGA 3 cut(s) 574, 755, 1016
AsuNHI GCTAGC 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 840
BaeGI GKGCMC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 841
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 5 cut(s) 295, 424, 827, 845, 900
BccI CCATC 2 cut(s) 218, 511
BciT130I CCWGG 3 cut(s) 643, 830, 1001
BciVI GTATCC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 1001
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 1 cut(s) 945
BfuI GTATCC 1 cut(s) 50
BglII AGATCT 1 cut(s) 231
BisI GCNGC 5 cut(s) 284, 438, 816, 859, 914
BlsI GCNGC 5 cut(s) 285, 439, 817, 860, 915
Bme1390I CCNGG 3 cut(s) 643, 830, 1001
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 2 cut(s) 645, 646
BmiI GGNNCC 2 cut(s) 647, 799
BmrFI CCNGG 3 cut(s) 643, 830, 1001
BmsI GCATC 3 cut(s) 328, 362, 664
BmtI GCTAGC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 419
Bpu10I CCTNAGC 2 cut(s) 162, 723
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 2 cut(s) 642, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 389, 629
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 3 cut(s) 643, 830, 1001
BseDI CCNNGG 2 cut(s) 642, 1000
BseGI GGATG 2 cut(s) 269, 781
BseLI CCNNNNNNNGG 3 cut(s) 120, 389, 629
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 3 cut(s) 176, 612, 714
BseNI ACTGG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 5 cut(s) 295, 424, 827, 845, 900
BsgI GTGCAG 3 cut(s) 302, 495, 844
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 1 cut(s) 647
BsiHKAI GWGCWC 1 cut(s) 841
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 2 cut(s) 5, 560
BslI CCNNNNNNNGG 3 cut(s) 120, 389, 629
BsmAI GTCTC 1 cut(s) 1001
BsnI GGCC 1 cut(s) 647
Bso31I GGTCTC 1 cut(s) 1001
BsoBI CYCGRG 1 cut(s) 840
Bsp120I GGGCCC 1 cut(s) 645
Bsp1286I GDGCHC 2 cut(s) 649, 841
Bsp143I GATC 4 cut(s) 190, 231, 478, 496
BspACI CCGC 3 cut(s) 649, 881, 968
BspANI GGCC 1 cut(s) 647
BspCNI CTCAG 3 cut(s) 175, 611, 715
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 2 cut(s) 647, 799
BspOI GCTAGC 1 cut(s) 585
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 1001
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 559
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 642, 1000
BssMI GATC 4 cut(s) 190, 231, 478, 496
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 3 cut(s) 643, 830, 1001
Bst4CI ACNGT 1 cut(s) 513
Bst6I CTCTTC 1 cut(s) 343
BstACI GRCGYC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 683
BstC8I GCNNGC 7 cut(s) 343, 557, 583, 649, 856, 881, 885
BstDEI CTNAG 4 cut(s) 162, 360, 598, 723
BstF5I GGATG 2 cut(s) 269, 781
BstFNI CGCG 1 cut(s) 651
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 4 cut(s) 193, 234, 481, 499
BstMAI GTCTC 1 cut(s) 1001
BstMBI GATC 4 cut(s) 190, 231, 478, 496
BstMWI GCNNNNNNNGC 2 cut(s) 152, 683
BstNI CCWGG 3 cut(s) 643, 830, 1001
BstSCI CCNGG 3 cut(s) 641, 828, 999
BstSFI CTRYAG 1 cut(s) 945
BstSLI GKGCMC 1 cut(s) 649
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 5 cut(s) 295, 424, 827, 845, 900
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 2 cut(s) 190, 231
BstYI RGATCY 2 cut(s) 190, 231
BsuI GTATCC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 647
BtsCI GGATG 2 cut(s) 269, 781
BtsIMutI CAGTG 2 cut(s) 462, 993
Cac8I GCNNGC 7 cut(s) 343, 557, 583, 649, 856, 881, 885
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 653
Cfr10I RCCGGY 1 cut(s) 559
Cfr13I GGNCC 2 cut(s) 645, 646
Csp6I GTAC 2 cut(s) 141, 550
CspCI CAANNNNNGTGG 2 cut(s) 753, 788
CviAII CATG 4 cut(s) 316, 545, 730, 1025
CviQI GTAC 2 cut(s) 141, 550
DdeI CTNAG 4 cut(s) 162, 360, 598, 723
DpnI GATC 4 cut(s) 192, 233, 480, 498
DpnII GATC 4 cut(s) 190, 231, 478, 496
DrdI GACNNNNNNGTC 1 cut(s) 536
DseDI GACNNNNNNGTC 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 649
Eco31I GGTCTC 1 cut(s) 1001
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 645
EcoRII CCWGG 3 cut(s) 641, 828, 999
EcoT38I GRGCYC 1 cut(s) 649
FaeI CATG 4 cut(s) 319, 548, 733, 1028
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FatI CATG 4 cut(s) 315, 544, 729, 1024
FauI CCCGC 3 cut(s) 656, 888, 975
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 5 cut(s) 284, 438, 816, 859, 914
FokI GGATG 2 cut(s) 276, 788
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 5 cut(s) 284, 438, 816, 859, 914
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 652
GluI GCNGC 5 cut(s) 284, 438, 816, 859, 914
HaeIII GGCC 1 cut(s) 647
HapII CCGG 2 cut(s) 5, 560
HhaI GCGC 1 cut(s) 653
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 4 cut(s) 319, 548, 733, 1028
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HincII GTYRAC 2 cut(s) 541, 975
HindII GTYRAC 2 cut(s) 541, 975
HinfI GANTC 6 cut(s) 8, 31, 80, 310, 379, 428
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 2 cut(s) 5, 560
HphI GGTGA 3 cut(s) 574, 755, 1016
Hpy166II GTNNAC 3 cut(s) 541, 550, 975
Hpy188I TCNGA 2 cut(s) 601, 673
Hpy188III TCNNGA 6 cut(s) 164, 507, 623, 708, 730, 842
Hpy8I GTNNAC 3 cut(s) 541, 550, 975
HpyAV CCTTC 2 cut(s) 751, 827
HpyCH4III ACNGT 1 cut(s) 513
HpyCH4IV ACGT 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 683
HpyF3I CTNAG 4 cut(s) 162, 360, 598, 723
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 4 cut(s) 319, 548, 733, 1028
HspAI GCGC 1 cut(s) 651
KspAI GTTAAC 1 cut(s) 975
Kzo9I GATC 4 cut(s) 190, 231, 478, 496
LguI GCTCTTC 1 cut(s) 343
LmnI GCTCC 2 cut(s) 319, 812
Lsp1109I GCAGC 5 cut(s) 295, 424, 827, 845, 900
LweI GCATC 3 cut(s) 328, 362, 664
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 4 cut(s) 266, 367, 822, 928
MalI GATC 4 cut(s) 192, 233, 480, 498
MboI GATC 4 cut(s) 190, 231, 478, 496
MboII GAAGA 4 cut(s) 360, 424, 491, 967
MflI RGATCY 2 cut(s) 190, 231
MhlI GDGCHC 2 cut(s) 649, 841
MluCI AATT 7 cut(s) 45, 168, 443, 591, 665, 738, 958
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 7 cut(s) 51, 207, 595, 607, 718, 746, 838
MroXI GAANNNNTTC 2 cut(s) 131, 962
MseI TTAA 4 cut(s) 51, 204, 210, 974
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 2 cut(s) 5, 560
MspR9I CCNGG 3 cut(s) 643, 830, 1001
MvaI CCWGG 3 cut(s) 643, 830, 1001
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 2 cut(s) 152, 683
NdeII GATC 4 cut(s) 190, 231, 478, 496
NheI GCTAGC 1 cut(s) 581
NlaIII CATG 4 cut(s) 319, 548, 733, 1028
NlaIV GGNNCC 2 cut(s) 647, 799
NmuCI GTSAC 2 cut(s) 266, 928
PagI TCATGA 1 cut(s) 729
PciSI GCTCTTC 1 cut(s) 343
PdmI GAANNNNTTC 2 cut(s) 131, 962
PfeI GAWTC 5 cut(s) 31, 80, 310, 379, 428
PkrI GCNGC 5 cut(s) 285, 439, 817, 860, 915
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 641, 828, 999
PspGI CCWGG 3 cut(s) 641, 828, 999
PspN4I GGNNCC 2 cut(s) 647, 799
PspOMI GGGCCC 1 cut(s) 645
PspPI GGNCC 2 cut(s) 645, 646
PsuI RGATCY 2 cut(s) 190, 231
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 142, 551
RsaNI GTAC 2 cut(s) 141, 550
SalI GTCGAC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 343
SaqAI TTAA 4 cut(s) 51, 204, 210, 974
SatI GCNGC 5 cut(s) 284, 438, 816, 859, 914
Sau3AI GATC 4 cut(s) 190, 231, 478, 496
Sau96I GGNCC 2 cut(s) 645, 646
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 3 cut(s) 643, 830, 1001
SduI GDGCHC 2 cut(s) 649, 841
SfaNI GCATC 3 cut(s) 328, 362, 664
SfcI CTRYAG 1 cut(s) 945
Sse9I AATT 7 cut(s) 45, 168, 443, 591, 665, 738, 958
SsiI CCGC 3 cut(s) 649, 881, 968
SspI AATATT 2 cut(s) 208, 981
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 3 cut(s) 641, 828, 999
TaaI ACNGT 1 cut(s) 513
TaiI ACGT 1 cut(s) 273
TaqI TCGA 4 cut(s) 481, 515, 540, 693
TasI AATT 7 cut(s) 45, 168, 443, 591, 665, 738, 958
TatI WGTACW 1 cut(s) 549
TfiI GAWTC 5 cut(s) 31, 80, 310, 379, 428
Tru1I TTAA 4 cut(s) 51, 204, 210, 974
Tru9I TTAA 4 cut(s) 51, 204, 210, 974
TscAI CASTG 2 cut(s) 469, 993
TseFI GTSAC 2 cut(s) 266, 928
TseI GCWGC 5 cut(s) 283, 437, 815, 858, 913
Tsp45I GTSAC 2 cut(s) 266, 928
TspDTI ATGAA 2 cut(s) 491, 746
TspGWI ACGGA 2 cut(s) 372, 1027
TspRI CASTG 2 cut(s) 469, 993
VspI ATTAAT 1 cut(s) 51
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 2 cut(s) 131, 962
XspI CTAG 1 cut(s) 582
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.