RLG00000003197

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009863
Physical Location & Seq
Forward (+)
45513562 .. 45517472
3911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003197

Sequence Viewer

Length: 1212 bp
ATGGCTGCCTCGCTCGTCATGCCGTCGCCTGCGACGTCGTCCACGGCGGCGATGGCTTCGTCTCGTTCGTCTCTCTTCGCTCGCGGCCATGGAAATTTGCTCGGCGGGAGTGAATATGGCTCCCGAATCTACGCTCCTGACTGTGTTAAATGTGAAATGGCTGAACCAATAAACGGAAATGGGAAGCCGATTATTCCTGTTGTGAACGAGCGGACACTGCCCAAGTTCTTGGAATCGGCACGGTTGGCGAAATCGGTTAACAGAAGTAGTTCCAGGCTCAAATTGTTTTCTGGCACAGCAAATCCTGCTCTTTCCCAGGAAATCGCTTGGTACATGGGTTTGGAGCTTGGAAAGATCAACATAAAGAGGTTTGCTGATGGTGAAGTATATGTTCAGTTGGGAGAGAGTGTTAGAGGGTGTGATGTATTCTTATTGCAGCCAACCTGCCCTCCTGTCAATGAGAACCTCATGGAGCTACAAATTATAATTGATGCATGTCGGAGGGCATCGGCCAGAAATATTACTACAGTTATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATAGCAGCCAAACTGGTTGCAAACCTCGTCACTATGGCAGGTGCAGACCGTGTTCTTGCTTGTGACATTCATTCTGGGCAGTCAATAGGTTACTTTGATATACCAGTGGATCATGTCTATTGTGAGCATGTTATCCTTGATTACCTAGCCAGCAAGGCAATTTGTTCTGATGATTTGGTGGTGGTATCCCCTGATGTTGGGGGAGTTGCAAGAGCACGTGCTTTTGCAAAGAAACTATCTGATGCACCTTTAGCCATCATAGACAAAAGGCGTCATGGACACAATATTGCTGAGGTGATGAACTTGATTGGCGATGTAAAAGGAAAGGTTGCAGTGATGGTGGATGATATGATTGACACTGCTGGGACAATCTCAAAAGGCGCAGCCCTGTTACATGAAGAGGGGGCAAGGGAAGTCTATGCATGCTGTACCCATGCTGTGTTTAGCCCTCCTGCAATTGAAAGGTTATCAAGTGGCCTGTTTCAAGAGGTGATTGTAACGAACACAATCCCTGTTGCAGAGAAGAATTACTTCCCTCAGTTGACTATCCTTTCAGTAGCTAACCTGTTGGGTGAGACCATTTGGCGTGTTCACGATGATTCTTCTGTGAGTAGCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

404

Amino Acids

43.43

Weight (kDa)

6.51

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 93 - 209 9.1e-50 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 253 - 341 1.4e-16 Phosphoribosyl transferase domain
Pribosyl_synth PF14572 295 - 402 2.5e-24 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AarI CACCTGC 1 cut(s) 614
AatII GACGTC 1 cut(s) 38
Acc36I ACCTGC 2 cut(s) 452, 614
AccB7I CCANNNNNTGG 1 cut(s) 542
AccBSI CCGCTC 1 cut(s) 211
AccII CGCG 1 cut(s) 84
AciI CCGC 4 cut(s) 47, 84, 105, 211
AclWI GGATC 1 cut(s) 702
AcoI YGGCCR 2 cut(s) 85, 510
AcsI RAATTY 1 cut(s) 94
AcvI CACGTG 1 cut(s) 803
AcyI GRCGYC 2 cut(s) 35, 856
AfaI GTAC 2 cut(s) 332, 1015
AfiI CCNNNNNNNGG 3 cut(s) 173, 542, 782
AgsI TTSAA 2 cut(s) 1046, 1070
AjnI CCWGG 2 cut(s) 272, 315
AluBI AGCT 4 cut(s) 346, 475, 557, 1145
AluI AGCT 4 cut(s) 346, 475, 557, 1145
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 3 cut(s) 66, 75, 1154
AlwI GGATC 1 cut(s) 702
AoxI GGCC 3 cut(s) 85, 510, 1060
ApeKI GCWGC 4 cut(s) 5, 436, 590, 968
ApoI RAATTY 1 cut(s) 94
Asp700I GAANNNNTTC 2 cut(s) 268, 1115
AspLEI GCGC 1 cut(s) 968
AsuHPI GGTGA 4 cut(s) 392, 892, 1087, 1169
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BbrPI CACGTG 1 cut(s) 803
Bbv12I GWGCWC 1 cut(s) 802
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 3 cut(s) 448, 602, 980
BccI CCATC 4 cut(s) 46, 371, 848, 916
BceAI ACGGC 2 cut(s) 7, 60
BciT130I CCWGG 2 cut(s) 274, 317
BciVI GTATCC 1 cut(s) 781
BcoDI GTCTC 3 cut(s) 66, 75, 1154
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 525
BfuAI ACCTGC 2 cut(s) 452, 614
BfuI GTATCC 1 cut(s) 781
BglI GCCNNNNNGGC 1 cut(s) 740
BisI GCNGC 6 cut(s) 6, 48, 85, 437, 591, 969
BlsI GCNGC 6 cut(s) 7, 49, 86, 438, 592, 970
Bme1390I CCNGG 2 cut(s) 274, 317
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 274, 317
BmsI GCATC 3 cut(s) 481, 515, 817
Bpu10I CCTNAGC 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 803
BsaHI GRCGYC 2 cut(s) 35, 856
BsaI GGTCTC 1 cut(s) 1154
BsaJI CCNNGG 3 cut(s) 42, 88, 315
BsaXI ACNNNNNCTCC 4 cut(s) 393, 423, 433, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 542, 782
Bse1I ACTGG 2 cut(s) 603, 689
BseBI CCWGG 2 cut(s) 274, 317
BseDI CCNNGG 3 cut(s) 42, 88, 315
BseGI GGATG 1 cut(s) 934
BseLI CCNNNNNNNGG 3 cut(s) 173, 542, 782
BseMII CTCAG 2 cut(s) 867, 1136
BseNI ACTGG 2 cut(s) 603, 689
BseXI GCAGC 3 cut(s) 448, 602, 980
BseYI CCCAGC 1 cut(s) 947
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 3 cut(s) 87, 512, 1062
BsiHKAI GWGCWC 1 cut(s) 802
BslFI GGGAC 1 cut(s) 964
BslI CCNNNNNNNGG 3 cut(s) 173, 542, 782
BsmAI GTCTC 3 cut(s) 66, 75, 1154
BsmBI CGTCTC 2 cut(s) 66, 75
BsmFI GGGAC 1 cut(s) 964
BsnI GGCC 3 cut(s) 87, 512, 1062
Bso31I GGTCTC 1 cut(s) 1154
Bsp1286I GDGCHC 1 cut(s) 802
Bsp143I GATC 2 cut(s) 354, 694
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 4 cut(s) 47, 84, 105, 211
BspANI GGCC 3 cut(s) 87, 512, 1062
BspCNI CTCAG 2 cut(s) 868, 1135
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 121
BspMI ACCTGC 2 cut(s) 452, 614
BspPI GGATC 1 cut(s) 702
BspTNI GGTCTC 1 cut(s) 1154
BsrBI CCGCTC 1 cut(s) 211
BsrI ACTGG 2 cut(s) 603, 689
BssECI CCNNGG 3 cut(s) 42, 88, 315
BssMI GATC 2 cut(s) 354, 694
BssNI GRCGYC 2 cut(s) 35, 856
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 274, 317
Bst4CI ACNGT 4 cut(s) 143, 243, 529, 635
Bst6I CTCTTC 2 cut(s) 80, 978
BstACI GRCGYC 2 cut(s) 35, 856
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 4 cut(s) 30, 82, 736, 1009
BstDEI CTNAG 2 cut(s) 876, 1122
BstDSI CCRYGG 2 cut(s) 42, 88
BstF5I GGATG 1 cut(s) 934
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 968
BstKTI GATC 2 cut(s) 357, 697
BstMAI GTCTC 3 cut(s) 66, 75, 1154
BstMBI GATC 2 cut(s) 354, 694
BstMWI GCNNNNNNNGC 7 cut(s) 19, 53, 217, 245, 305, 740, 836
BstNI CCWGG 2 cut(s) 274, 317
BstNSI RCATGY 3 cut(s) 498, 716, 1011
BstSCI CCNGG 2 cut(s) 272, 315
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 448, 602, 980
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 781
BsuRI GGCC 3 cut(s) 87, 512, 1062
BtgI CCRYGG 2 cut(s) 42, 88
BtgZI GCGATG 2 cut(s) 65, 912
BtsCI GGATG 1 cut(s) 934
BtsI GCAGTG 3 cut(s) 215, 924, 942
BtsIMutI CAGTG 4 cut(s) 215, 696, 924, 942
BveI ACCTGC 2 cut(s) 452, 614
Cac8I GCNNGC 4 cut(s) 30, 82, 736, 1009
CfoI GCGC 1 cut(s) 968
CseI GACGC 1 cut(s) 845
Csp6I GTAC 2 cut(s) 331, 1014
CviQI GTAC 2 cut(s) 331, 1014
DdeI CTNAG 2 cut(s) 876, 1122
DpnI GATC 2 cut(s) 356, 696
DpnII GATC 2 cut(s) 354, 694
EaeI YGGCCR 2 cut(s) 85, 510
Eam1104I CTCTTC 2 cut(s) 80, 978
EarI CTCTTC 2 cut(s) 80, 978
Eco130I CCWWGG 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 1154
Eco72I CACGTG 1 cut(s) 803
EcoRII CCWGG 2 cut(s) 272, 315
EcoT14I CCWWGG 1 cut(s) 88
EcoT22I ATGCAT 2 cut(s) 496, 1009
ErhI CCWWGG 1 cut(s) 88
Esp3I CGTCTC 2 cut(s) 66, 75
FalI AAGNNNNNCTT 2 cut(s) 1100, 1132
FaqI GGGAC 1 cut(s) 964
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 6 cut(s) 6, 48, 85, 437, 591, 969
FokI GGATG 1 cut(s) 941
Fsp4HI GCNGC 6 cut(s) 6, 48, 85, 437, 591, 969
FspBI CTAG 1 cut(s) 731
GlaI GCGC 1 cut(s) 967
GluI GCNGC 6 cut(s) 6, 48, 85, 437, 591, 969
GsaI CCCAGC 1 cut(s) 951
HaeIII GGCC 3 cut(s) 87, 512, 1062
HgaI GACGC 1 cut(s) 845
HhaI GCGC 1 cut(s) 968
Hin1I GRCGYC 2 cut(s) 35, 856
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HincII GTYRAC 2 cut(s) 259, 1128
HindII GTYRAC 2 cut(s) 259, 1128
HinfI GANTC 5 cut(s) 126, 233, 568, 581, 1184
HpaI GTTAAC 1 cut(s) 259
HphI GGTGA 4 cut(s) 392, 892, 1087, 1169
Hpy166II GTNNAC 5 cut(s) 42, 205, 259, 1128, 1177
Hpy188I TCNGA 3 cut(s) 501, 754, 826
Hpy188III TCNNGA 4 cut(s) 123, 137, 1070, 1178
Hpy8I GTNNAC 5 cut(s) 42, 205, 259, 1128, 1177
Hpy99I CGWCG 3 cut(s) 28, 37, 40
HpyCH4III ACNGT 4 cut(s) 143, 243, 529, 635
HpyCH4IV ACGT 2 cut(s) 35, 802
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 53, 217, 245, 305, 740, 836
HpyF3I CTNAG 2 cut(s) 876, 1122
HpySE526I ACGT 2 cut(s) 35, 802
Hsp92I GRCGYC 2 cut(s) 35, 856
HspAI GCGC 1 cut(s) 966
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 354, 694
LmnI GCTCC 4 cut(s) 125, 139, 343, 472
Lsp1109I GCAGC 3 cut(s) 448, 602, 980
LweI GCATC 3 cut(s) 481, 515, 817
MaeI CTAG 1 cut(s) 731
MaeII ACGT 2 cut(s) 35, 802
MaeIII GTNAC 5 cut(s) 613, 647, 674, 975, 1081
MalI GATC 2 cut(s) 356, 696
MbiI CCGCTC 1 cut(s) 211
MboI GATC 2 cut(s) 354, 694
MboII GAAGA 4 cut(s) 67, 995, 1120, 1179
MfeI CAATTG 1 cut(s) 1041
MhlI GDGCHC 1 cut(s) 802
MluCI AATT 7 cut(s) 94, 281, 480, 486, 744, 1041, 1111
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 1 cut(s) 479
Mph1103I ATGCAT 2 cut(s) 496, 1009
MroXI GAANNNNTTC 2 cut(s) 268, 1115
MseI TTAA 2 cut(s) 147, 258
MspR9I CCNGG 2 cut(s) 274, 317
MunI CAATTG 1 cut(s) 1041
MvaI CCWGG 2 cut(s) 274, 317
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 7 cut(s) 19, 53, 217, 245, 305, 740, 836
NcoI CCATGG 1 cut(s) 88
NdeII GATC 2 cut(s) 354, 694
NlaIV GGNNCC 1 cut(s) 121
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 613, 647
NsiI ATGCAT 2 cut(s) 496, 1009
NspI RCATGY 3 cut(s) 498, 716, 1011
PaeI GCATGC 1 cut(s) 1011
PaqCI CACCTGC 1 cut(s) 614
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 65
PdmI GAANNNNTTC 2 cut(s) 268, 1115
PfeI GAWTC 4 cut(s) 126, 233, 581, 1184
PflFI GACNNNGTC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 6 cut(s) 7, 49, 86, 438, 592, 970
PleI GAGTC 1 cut(s) 562
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
PpsI GAGTC 1 cut(s) 562
Ppu21I YACGTR 1 cut(s) 803
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 272, 315
PspCI CACGTG 1 cut(s) 803
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 2 cut(s) 272, 315
PspN4I GGNNCC 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 37
RsaI GTAC 2 cut(s) 332, 1015
RsaNI GTAC 2 cut(s) 331, 1014
SaqAI TTAA 2 cut(s) 147, 258
SatI GCNGC 6 cut(s) 6, 48, 85, 437, 591, 969
Sau3AI GATC 2 cut(s) 354, 694
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 2 cut(s) 274, 317
SduI GDGCHC 1 cut(s) 802
SfaNI GCATC 3 cut(s) 481, 515, 817
SfcI CTRYAG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
SphI GCATGC 1 cut(s) 1011
Sse9I AATT 7 cut(s) 94, 281, 480, 486, 744, 1041, 1111
SsiI CCGC 4 cut(s) 47, 84, 105, 211
SspI AATATT 2 cut(s) 520, 871
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 2 cut(s) 272, 315
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 4 cut(s) 143, 243, 529, 635
TaiI ACGT 2 cut(s) 38, 805
TasI AATT 7 cut(s) 94, 281, 480, 486, 744, 1041, 1111
TauI GCSGC 2 cut(s) 50, 87
TfiI GAWTC 4 cut(s) 126, 233, 581, 1184
Tru1I TTAA 2 cut(s) 147, 258
Tru9I TTAA 2 cut(s) 147, 258
TscAI CASTG 4 cut(s) 222, 696, 924, 949
TseFI GTSAC 2 cut(s) 613, 647
TseI GCWGC 4 cut(s) 5, 436, 590, 968
Tsp45I GTSAC 2 cut(s) 613, 647
TspDTI ATGAA 3 cut(s) 644, 899, 996
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 4 cut(s) 222, 696, 924, 949
Tth111I GACNNNGTC 1 cut(s) 37
Van91I CCANNNNNTGG 1 cut(s) 542
XapI RAATTY 1 cut(s) 94
XceI RCATGY 3 cut(s) 498, 716, 1011
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 2 cut(s) 268, 1115
XspI CTAG 1 cut(s) 731
ZraI GACGTC 1 cut(s) 36
Zsp2I ATGCAT 2 cut(s) 496, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.