Rmu_sc0013928.1_g000004

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013928.1
OG0009863
Physical Location & Seq
Reverse (-)
12877 .. 16657
3781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013928.1_g000004.1.cds

Sequence Viewer

Length: 1215 bp
atggctgcctcgctcgtcatgccgtcgcctgcgtcgtcgtcgtccacggcggcgatggcttcgtctcgttcgtctctcttcgctagcggccatagaaatttgctcggcggcagtgaatatggctcccgaatctacgctcctgactgtgttaaatgtgaaatggctgaaccaataaacggaaatgggaagccgattattcctgttgtgaacgagcggacactgcccaagttcttggaatcggcacggttggcgaaatcggttaacagaagtagttccaggctcaaattgttttctggcacagcaaatcctgctctttcccaggaaattgcttggtacatgggtttggagcttggaaagatcaacataaagaggtttgctgatggtgaagtatatgttcagttgggagagagtgttagaggatgtgatgtattcttattgcagccaacctgccctcctgtcaatgagaacctcatggagctacaaattataattgatgcatgtcggagggcatcggccagaaatattactgcagttattccatattttggatatgccagagctgatagaaagactcaagggcgtgaatccatagcagccaaactggttgcaaacctcgtcactatggcaggtgcagaccgtgttcttgcttgtgacattcattccgggcagtcaataggttactttgatataccagtggatcatgtatattgtgagcatgttatccttgattacctagccagcaaggcaatttgttctgatgatttggtggtggtatcccctgatgttgggggagttgcaagagcacgtgcttttgcaaagaaactatctgatgcacctttagccatcatagacaaaaggcgtcatggacacaatattgctgaggtgatgaacttgattggcgatgtaaaaggaaaagttgcagtgatggtggatgatatgattgacactgctgggacaatctcaaaaggcgcagccctgttacatgaagagggggcaagggaagtctatgcatgttgtacccatgctgtgtttagccctcctgcaattgaaaggttatcgagtggcctgtttcaagaggtgattgtaacaaacacaatccctgttgcagagaagaattacttccctcagttgactatactttcagtagctaacctgttgggtgagaccatttggcgtgttcacgatgattcttctgtgagtagcatatttcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

404

Amino Acids

43.5

Weight (kDa)

6.51

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AarI CACCTGC 1 cut(s) 617
Acc36I ACCTGC 2 cut(s) 455, 617
AccB7I CCANNNNNTGG 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 214
AciI CCGC 4 cut(s) 50, 87, 108, 214
AclWI GGATC 1 cut(s) 705
AcoI YGGCCR 2 cut(s) 88, 513
AcsI RAATTY 1 cut(s) 97
AcvI CACGTG 1 cut(s) 806
AcyI GRCGYC 1 cut(s) 859
AfaI GTAC 2 cut(s) 335, 1018
AfiI CCNNNNNNNGG 3 cut(s) 176, 545, 785
AgsI TTSAA 2 cut(s) 1049, 1073
AjnI CCWGG 2 cut(s) 275, 318
AluBI AGCT 4 cut(s) 349, 478, 560, 1148
AluI AGCT 4 cut(s) 349, 478, 560, 1148
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 3 cut(s) 69, 78, 1157
AlwI GGATC 1 cut(s) 705
AoxI GGCC 3 cut(s) 88, 513, 1063
ApeKI GCWGC 4 cut(s) 5, 439, 593, 971
ApoI RAATTY 1 cut(s) 97
Asp700I GAANNNNTTC 2 cut(s) 271, 1118
AspLEI GCGC 1 cut(s) 971
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 4 cut(s) 395, 895, 1090, 1172
AsuNHI GCTAGC 1 cut(s) 83
BaeI ACNNNNGTAYC 2 cut(s) 325, 358
BbrPI CACGTG 1 cut(s) 806
Bbv12I GWGCWC 1 cut(s) 805
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 3 cut(s) 451, 605, 983
BccI CCATC 4 cut(s) 49, 374, 851, 919
BceAI ACGGC 2 cut(s) 7, 63
BciT130I CCWGG 2 cut(s) 277, 320
BciVI GTATCC 1 cut(s) 784
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 3 cut(s) 69, 78, 1157
BfaI CTAG 2 cut(s) 84, 734
BfmI CTRYAG 1 cut(s) 528
BfuAI ACCTGC 2 cut(s) 455, 617
BfuI GTATCC 1 cut(s) 784
BglI GCCNNNNNGGC 1 cut(s) 743
BisI GCNGC 7 cut(s) 6, 51, 88, 109, 440, 594, 972
BlsI GCNGC 7 cut(s) 7, 52, 89, 110, 441, 595, 973
Bme1390I CCNGG 3 cut(s) 277, 320, 664
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 3 cut(s) 277, 320, 664
BmsI GCATC 3 cut(s) 484, 518, 820
BmtI GCTAGC 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 664
BsaAI YACGTR 1 cut(s) 806
BsaHI GRCGYC 1 cut(s) 859
BsaI GGTCTC 1 cut(s) 1157
BsaJI CCNNGG 2 cut(s) 45, 318
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 436, 466
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 545, 785
Bse1I ACTGG 2 cut(s) 606, 692
BseBI CCWGG 2 cut(s) 277, 320
BseDI CCNNGG 2 cut(s) 45, 318
BseGI GGATG 2 cut(s) 425, 937
BseLI CCNNNNNNNGG 3 cut(s) 176, 545, 785
BseMII CTCAG 2 cut(s) 870, 1139
BseNI ACTGG 2 cut(s) 606, 692
BseXI GCAGC 3 cut(s) 451, 605, 983
BseYI CCCAGC 1 cut(s) 950
BsgI GTGCAG 1 cut(s) 651
BshFI GGCC 3 cut(s) 90, 515, 1065
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 1 cut(s) 663
BslFI GGGAC 1 cut(s) 967
BslI CCNNNNNNNGG 3 cut(s) 176, 545, 785
BsmAI GTCTC 3 cut(s) 69, 78, 1157
BsmBI CGTCTC 2 cut(s) 69, 78
BsmFI GGGAC 1 cut(s) 967
BsnI GGCC 3 cut(s) 90, 515, 1065
Bso31I GGTCTC 1 cut(s) 1157
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 2 cut(s) 357, 697
BspACI CCGC 4 cut(s) 50, 87, 108, 214
BspANI GGCC 3 cut(s) 90, 515, 1065
BspCNI CTCAG 2 cut(s) 871, 1138
BspLI GGNNCC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 532
BspMI ACCTGC 2 cut(s) 455, 617
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 705
BspTNI GGTCTC 1 cut(s) 1157
BsrBI CCGCTC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 606, 692
BssECI CCNNGG 2 cut(s) 45, 318
BssMI GATC 2 cut(s) 357, 697
BssNI GRCGYC 1 cut(s) 859
Bst2UI CCWGG 2 cut(s) 277, 320
Bst4CI ACNGT 3 cut(s) 146, 246, 638
Bst6I CTCTTC 2 cut(s) 83, 981
BstACI GRCGYC 1 cut(s) 859
BstAPI GCANNNNNTGC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 806
BstC8I GCNNGC 3 cut(s) 30, 85, 739
BstDEI CTNAG 2 cut(s) 879, 1125
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 425, 937
BstHHI GCGC 1 cut(s) 971
BstKTI GATC 2 cut(s) 360, 700
BstMAI GTCTC 3 cut(s) 69, 78, 1157
BstMBI GATC 2 cut(s) 357, 697
BstMWI GCNNNNNNNGC 7 cut(s) 19, 56, 220, 248, 308, 743, 839
BstNI CCWGG 2 cut(s) 277, 320
BstNSI RCATGY 3 cut(s) 501, 719, 1014
BstSCI CCNGG 3 cut(s) 275, 318, 662
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 3 cut(s) 451, 605, 983
BstXI CCANNNNNNTGG 1 cut(s) 232
BsuI GTATCC 1 cut(s) 784
BsuRI GGCC 3 cut(s) 90, 515, 1065
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 2 cut(s) 68, 915
BtsCI GGATG 2 cut(s) 425, 937
BtsI GCAGTG 4 cut(s) 118, 218, 927, 945
BtsIMutI CAGTG 5 cut(s) 118, 218, 699, 927, 945
BveI ACCTGC 2 cut(s) 455, 617
Cac8I GCNNGC 3 cut(s) 30, 85, 739
CfoI GCGC 1 cut(s) 971
CseI GACGC 2 cut(s) 21, 848
Csp6I GTAC 2 cut(s) 334, 1017
CviQI GTAC 2 cut(s) 334, 1017
DdeI CTNAG 2 cut(s) 879, 1125
DpnI GATC 2 cut(s) 359, 699
DpnII GATC 2 cut(s) 357, 697
EaeI YGGCCR 2 cut(s) 88, 513
Eam1104I CTCTTC 2 cut(s) 83, 981
EarI CTCTTC 2 cut(s) 83, 981
Eco31I GGTCTC 1 cut(s) 1157
Eco72I CACGTG 1 cut(s) 806
EcoRII CCWGG 2 cut(s) 275, 318
EcoT22I ATGCAT 2 cut(s) 499, 1012
Esp3I CGTCTC 2 cut(s) 69, 78
FalI AAGNNNNNCTT 2 cut(s) 1103, 1135
FaqI GGGAC 1 cut(s) 967
Fnu4HI GCNGC 7 cut(s) 6, 51, 88, 109, 440, 594, 972
FokI GGATG 2 cut(s) 432, 944
Fsp4HI GCNGC 7 cut(s) 6, 51, 88, 109, 440, 594, 972
FspBI CTAG 2 cut(s) 84, 734
GlaI GCGC 1 cut(s) 970
GluI GCNGC 7 cut(s) 6, 51, 88, 109, 440, 594, 972
GsaI CCCAGC 1 cut(s) 954
HaeIII GGCC 3 cut(s) 90, 515, 1065
HapII CCGG 1 cut(s) 663
HgaI GACGC 2 cut(s) 21, 848
HhaI GCGC 1 cut(s) 971
Hin1I GRCGYC 1 cut(s) 859
Hin6I GCGC 1 cut(s) 969
HinP1I GCGC 1 cut(s) 969
HincII GTYRAC 2 cut(s) 262, 1131
HindII GTYRAC 2 cut(s) 262, 1131
HinfI GANTC 5 cut(s) 129, 236, 571, 584, 1187
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 1 cut(s) 663
HphI GGTGA 4 cut(s) 395, 895, 1090, 1172
Hpy166II GTNNAC 5 cut(s) 45, 208, 262, 1131, 1180
Hpy188I TCNGA 3 cut(s) 504, 757, 829
Hpy188III TCNNGA 4 cut(s) 126, 140, 1073, 1181
Hpy8I GTNNAC 5 cut(s) 45, 208, 262, 1131, 1180
Hpy99I CGWCG 4 cut(s) 28, 37, 40, 43
HpyCH4III ACNGT 3 cut(s) 146, 246, 638
HpyCH4IV ACGT 1 cut(s) 805
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 56, 220, 248, 308, 743, 839
HpyF3I CTNAG 2 cut(s) 879, 1125
HpySE526I ACGT 1 cut(s) 805
Hsp92I GRCGYC 1 cut(s) 859
HspAI GCGC 1 cut(s) 969
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 357, 697
LmnI GCTCC 4 cut(s) 128, 142, 346, 475
Lsp1109I GCAGC 3 cut(s) 451, 605, 983
LweI GCATC 3 cut(s) 484, 518, 820
MaeI CTAG 2 cut(s) 84, 734
MaeII ACGT 1 cut(s) 805
MaeIII GTNAC 5 cut(s) 616, 650, 677, 978, 1084
MalI GATC 2 cut(s) 359, 699
MbiI CCGCTC 1 cut(s) 214
MboI GATC 2 cut(s) 357, 697
MboII GAAGA 4 cut(s) 70, 998, 1123, 1182
MfeI CAATTG 1 cut(s) 1044
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 8 cut(s) 97, 284, 324, 483, 489, 747, 1044, 1114
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 482
Mph1103I ATGCAT 2 cut(s) 499, 1012
MroXI GAANNNNTTC 2 cut(s) 271, 1118
MseI TTAA 2 cut(s) 150, 261
MspI CCGG 1 cut(s) 663
MspR9I CCNGG 3 cut(s) 277, 320, 664
MunI CAATTG 1 cut(s) 1044
MvaI CCWGG 2 cut(s) 277, 320
MwoI GCNNNNNNNGC 7 cut(s) 19, 56, 220, 248, 308, 743, 839
NciI CCSGG 1 cut(s) 664
NdeII GATC 2 cut(s) 357, 697
NheI GCTAGC 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 616, 650
NsiI ATGCAT 2 cut(s) 499, 1012
NspI RCATGY 3 cut(s) 501, 719, 1014
PaqCI CACCTGC 1 cut(s) 617
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 68
PdmI GAANNNNTTC 2 cut(s) 271, 1118
PfeI GAWTC 4 cut(s) 129, 236, 584, 1187
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 7 cut(s) 7, 52, 89, 110, 441, 595, 973
PleI GAGTC 1 cut(s) 565
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
PpsI GAGTC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 806
PsiI TTATAA 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 275, 318
PspCI CACGTG 1 cut(s) 806
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 2 cut(s) 275, 318
PspN4I GGNNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 532
RsaI GTAC 2 cut(s) 335, 1018
RsaNI GTAC 2 cut(s) 334, 1017
SaqAI TTAA 2 cut(s) 150, 261
SatI GCNGC 7 cut(s) 6, 51, 88, 109, 440, 594, 972
Sau3AI GATC 2 cut(s) 357, 697
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 3 cut(s) 277, 320, 664
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 3 cut(s) 484, 518, 820
SfcI CTRYAG 1 cut(s) 528
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 8 cut(s) 97, 284, 324, 483, 489, 747, 1044, 1114
SsiI CCGC 4 cut(s) 50, 87, 108, 214
SspI AATATT 2 cut(s) 523, 874
SspMI CTAG 2 cut(s) 84, 734
StyD4I CCNGG 3 cut(s) 275, 318, 662
TaaI ACNGT 3 cut(s) 146, 246, 638
TaiI ACGT 1 cut(s) 808
TaqI TCGA 1 cut(s) 1058
TasI AATT 8 cut(s) 97, 284, 324, 483, 489, 747, 1044, 1114
TauI GCSGC 3 cut(s) 53, 90, 111
TfiI GAWTC 4 cut(s) 129, 236, 584, 1187
Tru1I TTAA 2 cut(s) 150, 261
Tru9I TTAA 2 cut(s) 150, 261
TscAI CASTG 5 cut(s) 118, 225, 699, 927, 952
TseFI GTSAC 2 cut(s) 616, 650
TseI GCWGC 4 cut(s) 5, 439, 593, 971
Tsp45I GTSAC 2 cut(s) 616, 650
TspDTI ATGAA 3 cut(s) 647, 902, 999
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 5 cut(s) 118, 225, 699, 927, 952
Van91I CCANNNNNTGG 1 cut(s) 545
XapI RAATTY 1 cut(s) 97
XceI RCATGY 3 cut(s) 501, 719, 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmnI GAANNNNTTC 2 cut(s) 271, 1118
XspI CTAG 2 cut(s) 84, 734
Zsp2I ATGCAT 2 cut(s) 499, 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.