Rh7BG235800

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009863
Physical Location & Seq
Reverse (-)
20692919 .. 20697374
4456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG235800.1

Sequence Viewer

Length: 1002 bp
ATGGCTGCCTCGCTCGTCATGCCGTCGCCTGCTTCGTCGTCGTCCACGGCGGCGATGGCTGCGTCTCTGTTCGCTCGCGGCCATAGAAATTTGCTCGGCGGGAGTGAATATGGCTCCCGAATCTACGCTCCTAACTGTGTTAAATGTGAAATGGCTGAACCAATAAACGGAAATGGGAAGCCGATTATTCCTGTTGTGAACGAGCGGACACTGCCCAAGTTCTTGGAATCGGCACGGTTGGCGAAATCGGTTAACAGGAGTAGTTCCAGGCTCAAATTGTTTTCTGGCACAGCAAATCCTGCTCTTTCACAGGAAATTGCTTGGTACATGGGTTTGGAGCTTGGAAAGATCAACATAAAGAGGTTTGCTGATGGTGAAGTATATGTTCATTTGGAAGAGAGTGTTAGAGGATGTGATGTGTTCTTACTGCAGCCAACCTGCCCTCCTGTCAATGAGAACCTCATGGAGCTACAAATTATAATTGATGCATGTCGGAGGGCATCGGCCAGAAATATTACTGCAGTTATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATAGCAGCCAAACTGGTTGCAAACCTCGTCACTATGGCAGGTGCAGACCGTGTTCTTGCTTGTGACATTCATTCCGGGCAGTCAATAGGTTACTTTGATATACCAGTGGATCATGTATATTGTGAGCATGTTATCCTTGATTACCTAGCCAGCAAGGCAATTTGTTCTGATGATTTGGTGGTGGTATCCCCTGATGTTGGGGGAGTTGCAAGAGCACGTGCTTTTGCAAAGAAACTATCTGATGCACCTTTAGCCATCATAGACAAAAGGCGTCATGGACACAATATTGCTGAGGTAATTTCTGTGTCAAACCCCTACTTATATTTTGTAAGGCATAGGATGCTTCACATGTTCATCATTAGGTCAAGTTGTACAATGCAGTTTGTGGTTATTCTGGCTGAAATCTTTATCATCATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

333

Amino Acids

36.45

Weight (kDa)

8.81

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 91 - 207 1.7e-50 N-terminal domain of ribose phosphate pyrophosphokinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AarI CACCTGC 1 cut(s) 608
Acc36I ACCTGC 2 cut(s) 446, 608
AccB7I CCANNNNNTGG 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 78
AciI CCGC 4 cut(s) 50, 78, 99, 205
AclWI GGATC 1 cut(s) 696
AcoI YGGCCR 2 cut(s) 79, 504
AcsI RAATTY 1 cut(s) 88
AcvI CACGTG 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 850
AfaI GTAC 2 cut(s) 326, 952
AfiI CCNNNNNNNGG 3 cut(s) 167, 536, 776
AflIII ACRYGT 1 cut(s) 927
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 3 cut(s) 340, 469, 551
AluI AGCT 3 cut(s) 340, 469, 551
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 696
AoxI GGCC 2 cut(s) 79, 504
ApeKI GCWGC 4 cut(s) 5, 59, 430, 584
ApoI RAATTY 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 1 cut(s) 386
BaeI ACNNNNGTAYC 2 cut(s) 316, 349
BbrPI CACGTG 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 796
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 3 cut(s) 46, 442, 596
BccI CCATC 3 cut(s) 49, 365, 842
BceAI ACGGC 2 cut(s) 7, 63
BciT130I CCWGG 1 cut(s) 268
BciVI GTATCC 1 cut(s) 775
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 1 cut(s) 725
BfmI CTRYAG 2 cut(s) 428, 519
BfuAI ACCTGC 2 cut(s) 446, 608
BfuI GTATCC 1 cut(s) 775
BglI GCCNNNNNGGC 1 cut(s) 734
BisI GCNGC 6 cut(s) 6, 51, 60, 79, 431, 585
BlsI GCNGC 6 cut(s) 7, 52, 61, 80, 432, 586
Bme1390I CCNGG 2 cut(s) 268, 655
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 2 cut(s) 268, 655
BmsI GCATC 4 cut(s) 475, 509, 811, 909
Bpu10I CCTNAGC 1 cut(s) 870
BpuEI CTTGAG 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 797
BsaHI GRCGYC 1 cut(s) 850
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 536, 776
Bse1I ACTGG 2 cut(s) 597, 683
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 416, 924
BseLI CCNNNNNNNGG 3 cut(s) 167, 536, 776
BseMII CTCAG 1 cut(s) 861
BseNI ACTGG 2 cut(s) 597, 683
BseXI GCAGC 3 cut(s) 46, 442, 596
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 81, 506
BsiHKAI GWGCWC 1 cut(s) 796
BsiSI CCGG 1 cut(s) 654
BslI CCNNNNNNNGG 3 cut(s) 167, 536, 776
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 2 cut(s) 81, 506
Bsp1286I GDGCHC 1 cut(s) 796
Bsp1407I TGTACA 1 cut(s) 950
Bsp143I GATC 2 cut(s) 348, 688
BspACI CCGC 4 cut(s) 50, 78, 99, 205
BspANI GGCC 2 cut(s) 81, 506
BspCNI CTCAG 1 cut(s) 862
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 2 cut(s) 432, 523
BspMI ACCTGC 2 cut(s) 446, 608
BspPI GGATC 1 cut(s) 696
BsrBI CCGCTC 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 950
BsrI ACTGG 2 cut(s) 597, 683
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 2 cut(s) 348, 688
BssNI GRCGYC 1 cut(s) 850
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 3 cut(s) 137, 237, 629
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 850
BstAPI GCANNNNNTGC 2 cut(s) 299, 919
BstAUI TGTACA 1 cut(s) 950
BstBAI YACGTR 1 cut(s) 797
BstC8I GCNNGC 3 cut(s) 30, 76, 730
BstDEI CTNAG 1 cut(s) 870
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 416, 924
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 2 cut(s) 351, 691
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 2 cut(s) 348, 688
BstMWI GCNNNNNNNGC 9 cut(s) 19, 56, 59, 211, 239, 299, 734, 830, 919
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 3 cut(s) 492, 710, 931
BstSCI CCNGG 2 cut(s) 266, 653
BstSFI CTRYAG 2 cut(s) 428, 519
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 46, 442, 596
BstXI CCANNNNNNTGG 1 cut(s) 223
BsuI GTATCC 1 cut(s) 775
BsuRI GGCC 2 cut(s) 81, 506
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 416, 924
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 2 cut(s) 209, 690
BveI ACCTGC 2 cut(s) 446, 608
Cac8I GCNNGC 3 cut(s) 30, 76, 730
CseI GACGC 2 cut(s) 51, 839
Csp6I GTAC 2 cut(s) 325, 951
CviAII CATG 8 cut(s) 19, 328, 463, 489, 692, 707, 854, 928
CviQI GTAC 2 cut(s) 325, 951
DdeI CTNAG 1 cut(s) 870
DpnI GATC 2 cut(s) 350, 690
DpnII GATC 2 cut(s) 348, 688
EaeI YGGCCR 2 cut(s) 79, 504
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco72I CACGTG 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 490
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 8 cut(s) 22, 331, 466, 492, 695, 710, 857, 931
FatI CATG 8 cut(s) 18, 327, 462, 488, 691, 706, 853, 927
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 6 cut(s) 6, 51, 60, 79, 431, 585
FokI GGATG 2 cut(s) 423, 931
Fsp4HI GCNGC 6 cut(s) 6, 51, 60, 79, 431, 585
FspBI CTAG 1 cut(s) 725
GluI GCNGC 6 cut(s) 6, 51, 60, 79, 431, 585
HaeIII GGCC 2 cut(s) 81, 506
HapII CCGG 1 cut(s) 654
HgaI GACGC 2 cut(s) 51, 839
Hin1I GRCGYC 1 cut(s) 850
Hin1II CATG 8 cut(s) 22, 331, 466, 492, 695, 710, 857, 931
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 4 cut(s) 120, 227, 562, 575
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 1 cut(s) 654
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 3 cut(s) 45, 199, 253
Hpy188I TCNGA 3 cut(s) 495, 748, 820
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 3 cut(s) 45, 199, 253
Hpy99I CGWCG 3 cut(s) 28, 40, 43
HpyCH4III ACNGT 3 cut(s) 137, 237, 629
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 9 cut(s) 430, 488, 521, 599, 623, 788, 806, 824, 958
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 56, 59, 211, 239, 299, 734, 830, 919
HpyF3I CTNAG 1 cut(s) 870
HpySE526I ACGT 1 cut(s) 796
Hsp92I GRCGYC 1 cut(s) 850
Hsp92II CATG 8 cut(s) 22, 331, 466, 492, 695, 710, 857, 931
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 348, 688
LmnI GCTCC 4 cut(s) 119, 133, 337, 466
Lsp1109I GCAGC 3 cut(s) 46, 442, 596
LweI GCATC 4 cut(s) 475, 509, 811, 909
MaeI CTAG 1 cut(s) 725
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 3 cut(s) 607, 641, 668
MalI GATC 2 cut(s) 350, 690
MbiI CCGCTC 1 cut(s) 205
MboI GATC 2 cut(s) 348, 688
MboII GAAGA 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 796
MluCI AATT 7 cut(s) 88, 275, 315, 474, 480, 738, 876
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 8 cut(s) 19, 354, 401, 453, 470, 489, 614, 865
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 2 cut(s) 141, 252
MspI CCGG 1 cut(s) 654
MspR9I CCNGG 2 cut(s) 268, 655
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 9 cut(s) 19, 56, 59, 211, 239, 299, 734, 830, 919
NciI CCSGG 1 cut(s) 655
NdeII GATC 2 cut(s) 348, 688
NlaIII CATG 8 cut(s) 22, 331, 466, 492, 695, 710, 857, 931
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 607, 641
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 3 cut(s) 492, 710, 931
PaqCI CACCTGC 1 cut(s) 608
PciI ACATGT 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 3 cut(s) 120, 227, 575
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 6 cut(s) 7, 52, 61, 80, 432, 586
PleI GAGTC 1 cut(s) 556
PmaCI CACGTG 1 cut(s) 797
PmlI CACGTG 1 cut(s) 797
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 797
PscI ACATGT 1 cut(s) 927
PsiI TTATAA 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 266
PspCI CACGTG 1 cut(s) 797
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 115
PstI CTGCAG 2 cut(s) 432, 523
RsaI GTAC 2 cut(s) 326, 952
RsaNI GTAC 2 cut(s) 325, 951
SaqAI TTAA 2 cut(s) 141, 252
SatI GCNGC 6 cut(s) 6, 51, 60, 79, 431, 585
Sau3AI GATC 2 cut(s) 348, 688
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 2 cut(s) 268, 655
SduI GDGCHC 1 cut(s) 796
SfaNI GCATC 4 cut(s) 475, 509, 811, 909
SfcI CTRYAG 2 cut(s) 428, 519
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 7 cut(s) 88, 275, 315, 474, 480, 738, 876
SsiI CCGC 4 cut(s) 50, 78, 99, 205
SspI AATATT 2 cut(s) 514, 865
SspMI CTAG 1 cut(s) 725
StyD4I CCNGG 2 cut(s) 266, 653
TaaI ACNGT 3 cut(s) 137, 237, 629
TaiI ACGT 1 cut(s) 799
TasI AATT 7 cut(s) 88, 275, 315, 474, 480, 738, 876
TatI WGTACW 1 cut(s) 950
TauI GCSGC 2 cut(s) 53, 81
TfiI GAWTC 3 cut(s) 120, 227, 575
Tru1I TTAA 2 cut(s) 141, 252
Tru9I TTAA 2 cut(s) 141, 252
TscAI CASTG 2 cut(s) 216, 690
TseFI GTSAC 2 cut(s) 607, 641
TseI GCWGC 4 cut(s) 5, 59, 430, 584
Tsp45I GTSAC 2 cut(s) 607, 641
TspDTI ATGAA 3 cut(s) 377, 638, 922
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 2 cut(s) 216, 690
Van91I CCANNNNNTGG 1 cut(s) 536
XapI RAATTY 1 cut(s) 88
XceI RCATGY 3 cut(s) 492, 710, 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 1 cut(s) 725
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.