Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8445915.1

Orthogroup ID

OG0009863

Physical Location & Seq

Genomic Coordinates Forward (+)

653 .. 1643

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8445915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgggtttggagcttggaaagatcaacataaagaggtttgctgatggtgaagtatatgttcagttgggagagagtgttagaggatgtgatgtattcttgttgcagccaacctgccctcctgtcaatgagaacctcatggagctacaaattataattgatgcatgtcggagggcatcggccagaaatattactgcagttattccatattttggatatgccagagctgatagaaagactcaagggcgtgaatccatagcagccaaactggttgcaaacctcgtcactatggcaggtgcagaccgtgttcttgcttgtgacattcattccgggcagtcaataggttactttgatataccagtggatcatgtatattgtgagcatgttatccttgattacctagccagcaaggcaatttgttctgatgatttggtggtggtatcccctgatgttgggggagttgcaagagcacgtgcttttgcaaagaaactatctgatgcacctttagccatcatagacaaaaggcgtcatggacacaatattgctgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Pribosyl_synth Pribosyltran_N

Protein Analysis

182

Amino Acids

19.82

Weight (kDa)

6.51

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca	FvH4_5g21390
malus_domestica	MD06G1028600.v1.1
prunus_persica	Prupe.5G043200_v2.0.a1
pyrus_communis	pycom06g02270
rosa_chinensis	RchiOBHm_Chr7g0208781
rosa_laevigata	RLG00000003197
rosa_multiflora	Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250280
rosa_rugosa	Rorug07G0105700
rosa_samantha	Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana	Rw7G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	2 cut(s)	119, 281
AccB7I	CCANNNNNTGG	1 cut(s)	209
AclWI	GGATC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	523
AfiI	CCNNNNNNNGG	2 cut(s)	209, 449
AluBI	AGCT	3 cut(s)	13, 142, 224
AluI	AGCT	3 cut(s)	13, 142, 224
Alw21I	GWGCWC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	103, 257
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	59
BbrPI	CACGTG	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	115, 269
BccI	CCATC	2 cut(s)	38, 515
BciVI	GTATCC	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	328
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	2 cut(s)	119, 281
BfuI	GTATCC	1 cut(s)	448
BglI	GCCNNNNNGGC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	104, 258
BlsI	GCNGC	2 cut(s)	105, 259
Bme1390I	CCNGG	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	148, 182, 484
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	523
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 100, 130
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 449
Bse1I	ACTGG	2 cut(s)	270, 356
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	209, 449
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	270, 356
BseXI	GCAGC	2 cut(s)	115, 269
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	209, 449
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	21, 361
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	535
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	2 cut(s)	119, 281
BspPI	GGATC	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	270, 356
BssMI	GATC	2 cut(s)	21, 361
BssNI	GRCGYC	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	523
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	2 cut(s)	24, 364
BstMBI	GATC	2 cut(s)	21, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 503
BstNSI	RCATGY	2 cut(s)	165, 383
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	115, 269
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	363
BveI	ACCTGC	2 cut(s)	119, 281
Cac8I	GCNNGC	1 cut(s)	403
CseI	GACGC	1 cut(s)	512
CviAII	CATG	5 cut(s)	136, 162, 365, 380, 527
CviJI	RGCY	8 cut(s)	13, 106, 142, 179, 224, 260, 401, 506
CviKI_1	RGCY	8 cut(s)	13, 106, 142, 179, 224, 260, 401, 506
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	2 cut(s)	23, 363
DpnII	GATC	2 cut(s)	21, 361
EaeI	YGGCCR	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	163
FaeI	CATG	5 cut(s)	139, 165, 368, 383, 530
FatI	CATG	5 cut(s)	135, 161, 364, 379, 526
Fnu4HI	GCNGC	2 cut(s)	104, 258
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	104, 258
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	2 cut(s)	104, 258
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	512
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	5 cut(s)	139, 165, 368, 383, 530
HinfI	GANTC	2 cut(s)	235, 248
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	3 cut(s)	168, 421, 493
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	8 cut(s)	103, 161, 194, 272, 296, 461, 479, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 503
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	1 cut(s)	469
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	5 cut(s)	139, 165, 368, 383, 530
Kzo9I	GATC	2 cut(s)	21, 361
LmnI	GCTCC	2 cut(s)	10, 139
Lsp1109I	GCAGC	2 cut(s)	115, 269
LweI	GCATC	3 cut(s)	148, 182, 484
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	3 cut(s)	280, 314, 341
MalI	GATC	2 cut(s)	23, 363
MboI	GATC	2 cut(s)	21, 361
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	3 cut(s)	147, 153, 411
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	27, 74, 126, 143, 162, 287
Mph1103I	ATGCAT	1 cut(s)	163
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	407, 503
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	2 cut(s)	21, 361
NlaIII	CATG	5 cut(s)	139, 165, 368, 383, 530
NmuCI	GTSAC	2 cut(s)	280, 314
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	2 cut(s)	165, 383
PaqCI	CACCTGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	105, 259
PleI	GAGTC	1 cut(s)	229
PmaCI	CACGTG	1 cut(s)	470
PmlI	CACGTG	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	152
PspCI	CACGTG	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	196
SatI	GCNGC	2 cut(s)	104, 258
Sau3AI	GATC	2 cut(s)	21, 361
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	3 cut(s)	148, 182, 484
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	3 cut(s)	147, 153, 411
SspI	AATATT	2 cut(s)	187, 538
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	472
TasI	AATT	3 cut(s)	147, 153, 411
TfiI	GAWTC	1 cut(s)	248
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	2 cut(s)	280, 314
TseI	GCWGC	2 cut(s)	103, 257
Tsp45I	GTSAC	2 cut(s)	280, 314
TspDTI	ATGAA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	209
XceI	RCATGY	2 cut(s)	165, 383
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.