pycom06g02270

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009863
Physical Location & Seq
Reverse (-)
2746355 .. 2750261
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02270.5

Sequence Viewer

Length: 1191 bp
ATGGCTGCCTCATCGTCTTCAATGTCCTCGTCGTTTTCGTCTCTCTTCTCTCGCTGCTCCGTCAGCCATAGAACTCTGCTGCCCAATGACTCTGCCTCTCGAATCTACGCTCCTAATAGCGTCAAATGTGGTATGCCGGAACCAATTAAATACGGAAATGGGAAGCCAATCATTCCGATTGTTAACGAACCAACACTGCCTAAGTTCTTGGAATCGGCACGCTTGGAGAAATCGGTGAACAGAGATAGTTCCCGGCTCAAACTGTTTTCTGGAACAGCAAATCCTGCTCTTTCTCAGGAAATTGCTTGGTACATGGGATTGGAGCTTGGTAAGATCAACATAAAGCGATTTGCTGATGGTGAAGTTTATGTTCAATTGGGAGAGAGTGTTAGAGGATGTGATGTCTTCTTACTGCAGCCAACCTGCCCTCCTGTAAATGAGAACTTCATGGAGCTACAGATAGTAATTGATGCTTGCCGGAGGGCATCGGCCAAAAACATTACTGCAGTAATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCAGCCAAACTGGTTGCTAACCTCATAACCATAGCAGGTGCAGACCGCGTTCTTGCTTGTGACATTCATTCTGGGCAGTCAATAGGTTACTTTGATATACCAGTGGATCATGTATATTGTGAGCATGTGATCCTTGATTATCTTGCAAGCAAGACAATTTGTTCAGATGATTTGGTAGTGGTGTCCCCTGATGTTGGGGGAGTTGCAAGAGCACGTGCTTTTGCAAAAAAGTTATCTGATGCACCTTTAGCCATTGTAGACAAAAGGCGTCACGGACATAATGTTGCTGAGGTGATGAACCTGATTGGCGATGTAAAAGGAAAAGTTGCGGTTATGGTGGATGATATGATTGACACTGCTGGGACAATTTCAAAAGGTGCAGCTCTATTACATCAGGAGGGGGCAAGAGAAGTCTATGCTTGCAGTACCCATGCTGTGTTTAGCCCTCCTGCAATCGAAAGGTTGTCAAATGGCCTGTTTCAAGAGGTGATTGTGACAAACACAATCCCTGTTGCAGAGAAGAATTACTTTCCCCAGTTGACGGTCCTTTCAGTAGCAAACCTTTTGGGTGAAACTATATGGCGCGTGCATGATGATTGTTCTGTGAGTAGCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

397

Amino Acids

42.96

Weight (kDa)

6.75

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 593
Acc36I ACCTGC 2 cut(s) 431, 593
AccB7I CCANNNNNTGG 1 cut(s) 521
AccI GTMKAC 1 cut(s) 825
AccII CGCG 2 cut(s) 615, 1152
AciI CCGC 2 cut(s) 613, 896
AclWI GGATC 2 cut(s) 681, 691
AcoI YGGCCR 1 cut(s) 489
AcvI CACGTG 1 cut(s) 782
AcyI GRCGYC 1 cut(s) 835
AfaI GTAC 2 cut(s) 311, 994
AfiI CCNNNNNNNGG 3 cut(s) 521, 761, 1108
AgsI TTSAA 4 cut(s) 21, 374, 939, 1049
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
AluBI AGCT 4 cut(s) 325, 454, 536, 950
AluI AGCT 4 cut(s) 325, 454, 536, 950
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 2 cut(s) 681, 691
AoxI GGCC 2 cut(s) 489, 1039
ApeKI GCWGC 6 cut(s) 5, 54, 79, 415, 569, 947
AspLEI GCGC 1 cut(s) 1152
AspS9I GGNCC 1 cut(s) 1111
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 5 cut(s) 247, 371, 871, 1066, 1148
AvaII GGWCC 1 cut(s) 1111
BbrPI CACGTG 1 cut(s) 782
BbsI GAAGAC 2 cut(s) 9, 397
Bbv12I GWGCWC 1 cut(s) 781
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 5 cut(s) 41, 66, 427, 581, 959
BccI CCATC 1 cut(s) 350
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 45
BfmI CTRYAG 3 cut(s) 413, 455, 504
BfuAI ACCTGC 2 cut(s) 431, 593
BisI GCNGC 6 cut(s) 6, 55, 80, 416, 570, 948
BlsI GCNGC 6 cut(s) 7, 56, 81, 417, 571, 949
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 1111
BmgT120I GGNCC 1 cut(s) 1111
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 1096
BmsI GCATC 3 cut(s) 460, 494, 796
BmuI ACTGGG 1 cut(s) 1096
BpiI GAAGAC 2 cut(s) 9, 397
Bpu10I CCTNAGC 1 cut(s) 855
BpuEI CTTGAG 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 782
BsaHI GRCGYC 1 cut(s) 835
BsaXI ACNNNNNCTCC 4 cut(s) 372, 402, 412, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 521, 761, 1108
Bse1I ACTGG 3 cut(s) 582, 668, 1102
Bse3DI GCAATG 1 cut(s) 564
BseGI GGATG 2 cut(s) 401, 913
BseLI CCNNNNNNNGG 3 cut(s) 521, 761, 1108
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 2 cut(s) 308, 846
BseNI ACTGG 3 cut(s) 582, 668, 1102
BseXI GCAGC 5 cut(s) 41, 66, 427, 581, 959
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 2 cut(s) 627, 966
Bsh1236I CGCG 2 cut(s) 615, 1152
BshFI GGCC 2 cut(s) 491, 1041
BsiHKAI GWGCWC 1 cut(s) 781
BsiSI CCGG 3 cut(s) 137, 253, 478
BslFI GGGAC 2 cut(s) 736, 943
BslI CCNNNNNNNGG 3 cut(s) 521, 761, 1108
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 2 cut(s) 736, 943
BsnI GGCC 2 cut(s) 491, 1041
Bsp1286I GDGCHC 1 cut(s) 781
Bsp143I GATC 3 cut(s) 333, 673, 696
BspACI CCGC 2 cut(s) 613, 896
BspANI GGCC 2 cut(s) 491, 1041
BspCNI CTCAG 2 cut(s) 307, 847
BspFNI CGCG 2 cut(s) 615, 1152
BspLI GGNNCC 1 cut(s) 141
BspMAI CTGCAG 2 cut(s) 417, 508
BspMI ACCTGC 2 cut(s) 431, 593
BspPI GGATC 2 cut(s) 681, 691
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 3 cut(s) 582, 668, 1102
BssMI GATC 3 cut(s) 333, 673, 696
BssNI GRCGYC 1 cut(s) 835
Bst4CI ACNGT 2 cut(s) 264, 1111
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 835
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBAI YACGTR 1 cut(s) 782
BstC8I GCNNGC 5 cut(s) 220, 475, 715, 988, 1154
BstDEI CTNAG 3 cut(s) 201, 294, 855
BstF5I GGATG 2 cut(s) 401, 913
BstFNI CGCG 2 cut(s) 615, 1152
BstHHI GCGC 1 cut(s) 1152
BstKTI GATC 3 cut(s) 336, 676, 699
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 3 cut(s) 333, 673, 696
BstMWI GCNNNNNNNGC 3 cut(s) 63, 284, 815
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 3 cut(s) 413, 455, 504
BstUI CGCG 2 cut(s) 615, 1152
BstV1I GCAGC 5 cut(s) 41, 66, 427, 581, 959
BstV2I GAAGAC 2 cut(s) 9, 397
BsuRI GGCC 2 cut(s) 491, 1041
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 401, 913
BtsI GCAGTG 2 cut(s) 194, 921
BtsIMutI CAGTG 3 cut(s) 194, 675, 921
BveI ACCTGC 2 cut(s) 431, 593
Cac8I GCNNGC 5 cut(s) 220, 475, 715, 988, 1154
CfoI GCGC 1 cut(s) 1152
Cfr13I GGNCC 1 cut(s) 1111
CseI GACGC 2 cut(s) 109, 824
Csp6I GTAC 2 cut(s) 310, 993
CviAII CATG 6 cut(s) 313, 448, 677, 692, 998, 1157
CviQI GTAC 2 cut(s) 310, 993
DdeI CTNAG 3 cut(s) 201, 294, 855
DpnI GATC 3 cut(s) 335, 675, 698
DpnII GATC 3 cut(s) 333, 673, 696
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 1111
Eco72I CACGTG 1 cut(s) 782
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 6 cut(s) 316, 451, 680, 695, 1001, 1160
FalI AAGNNNNNCTT 2 cut(s) 1079, 1111
FaqI GGGAC 2 cut(s) 736, 943
FatI CATG 6 cut(s) 312, 447, 676, 691, 997, 1156
FblI GTMKAC 1 cut(s) 825
Fnu4HI GCNGC 6 cut(s) 6, 55, 80, 416, 570, 948
FokI GGATG 2 cut(s) 408, 920
Fsp4HI GCNGC 6 cut(s) 6, 55, 80, 416, 570, 948
GlaI GCGC 1 cut(s) 1151
GluI GCNGC 6 cut(s) 6, 55, 80, 416, 570, 948
GsaI CCCAGC 1 cut(s) 930
HaeIII GGCC 2 cut(s) 491, 1041
HapII CCGG 3 cut(s) 137, 253, 478
HgaI GACGC 2 cut(s) 109, 824
HhaI GCGC 1 cut(s) 1152
Hin1I GRCGYC 1 cut(s) 835
Hin1II CATG 6 cut(s) 316, 451, 680, 695, 1001, 1160
Hin6I GCGC 1 cut(s) 1150
HinP1I GCGC 1 cut(s) 1150
HincII GTYRAC 2 cut(s) 184, 1107
HindII GTYRAC 2 cut(s) 184, 1107
HinfI GANTC 5 cut(s) 89, 102, 212, 547, 560
HpaI GTTAAC 1 cut(s) 184
HpaII CCGG 3 cut(s) 137, 253, 478
HphI GGTGA 5 cut(s) 247, 371, 871, 1066, 1148
Hpy166II GTNNAC 4 cut(s) 184, 238, 826, 1107
Hpy188I TCNGA 3 cut(s) 177, 733, 805
Hpy188III TCNNGA 5 cut(s) 99, 270, 296, 962, 1049
Hpy8I GTNNAC 4 cut(s) 184, 238, 826, 1107
Hpy99I CGWCG 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 264, 1111
HpyCH4IV ACGT 1 cut(s) 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 284, 815
HpyF3I CTNAG 3 cut(s) 201, 294, 855
HpySE526I ACGT 1 cut(s) 781
Hsp92I GRCGYC 1 cut(s) 835
Hsp92II CATG 6 cut(s) 316, 451, 680, 695, 1001, 1160
HspAI GCGC 1 cut(s) 1150
KspAI GTTAAC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 333, 673, 696
LmnI GCTCC 4 cut(s) 62, 115, 322, 451
Lsp1109I GCAGC 5 cut(s) 41, 66, 427, 581, 959
LweI GCATC 3 cut(s) 460, 494, 796
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 4 cut(s) 626, 653, 836, 1060
MalI GATC 3 cut(s) 335, 675, 698
MboI GATC 3 cut(s) 333, 673, 696
MboII GAAGA 4 cut(s) 9, 37, 397, 1099
MfeI CAATTG 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 781
MluCI AATT 8 cut(s) 144, 300, 374, 465, 510, 723, 933, 1090
MlyI GAGTC 2 cut(s) 83, 541
MseI TTAA 2 cut(s) 147, 183
MspI CCGG 3 cut(s) 137, 253, 478
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 374
MvnI CGCG 2 cut(s) 615, 1152
MwoI GCNNNNNNNGC 3 cut(s) 63, 284, 815
NciI CCSGG 1 cut(s) 253
NdeII GATC 3 cut(s) 333, 673, 696
NlaIII CATG 6 cut(s) 316, 451, 680, 695, 1001, 1160
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 3 cut(s) 626, 836, 1060
NspI RCATGY 1 cut(s) 695
PaqCI CACCTGC 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 3 cut(s) 102, 212, 560
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 6 cut(s) 7, 56, 81, 417, 571, 949
PleI GAGTC 2 cut(s) 83, 541
PmaCI CACGTG 1 cut(s) 782
PmlI CACGTG 1 cut(s) 782
PpsI GAGTC 2 cut(s) 83, 541
Ppu21I YACGTR 1 cut(s) 782
PspCI CACGTG 1 cut(s) 782
PspFI CCCAGC 1 cut(s) 926
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 1111
PstI CTGCAG 2 cut(s) 417, 508
RsaI GTAC 2 cut(s) 311, 994
RsaNI GTAC 2 cut(s) 310, 993
SaqAI TTAA 2 cut(s) 147, 183
SatI GCNGC 6 cut(s) 6, 55, 80, 416, 570, 948
Sau3AI GATC 3 cut(s) 333, 673, 696
Sau96I GGNCC 1 cut(s) 1111
SchI GAGTC 2 cut(s) 83, 541
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 3 cut(s) 460, 494, 796
SfcI CTRYAG 3 cut(s) 413, 455, 504
SinI GGWCC 1 cut(s) 1111
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 8 cut(s) 144, 300, 374, 465, 510, 723, 933, 1090
SsiI CCGC 2 cut(s) 613, 896
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 264, 1111
TaiI ACGT 1 cut(s) 784
TaqI TCGA 2 cut(s) 100, 1023
TasI AATT 8 cut(s) 144, 300, 374, 465, 510, 723, 933, 1090
TfiI GAWTC 3 cut(s) 102, 212, 560
Tru1I TTAA 2 cut(s) 147, 183
Tru9I TTAA 2 cut(s) 147, 183
TscAI CASTG 3 cut(s) 201, 675, 928
TseFI GTSAC 3 cut(s) 626, 836, 1060
TseI GCWGC 6 cut(s) 5, 54, 79, 415, 569, 947
Tsp45I GTSAC 3 cut(s) 626, 836, 1060
TspDTI ATGAA 3 cut(s) 436, 623, 878
TspGWI ACGGA 3 cut(s) 49, 168, 855
TspRI CASTG 3 cut(s) 201, 675, 928
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 1111
XceI RCATGY 1 cut(s) 695
XmiI GTMKAC 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.