Rroxscaffold_3G00250280

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009863
Physical Location & Seq
Forward (+)
44083698 .. 44088030
4333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250280.1

Sequence Viewer

Length: 1020 bp
ATGGCTGCCTCGCTCGTCATGCCGTCGCCTGCGTCGTCTTCCACGGCGGCGATGGCTGCGTCTCGTTCGTCTCTGTTCGCTCGCGGCCATAGAAATTGGCTCGGCGCGAGTGAATTTGGCTCCCGAATCTACGCTCCTGACTGTGTTAAATGTGAAATGGCTGAACCAATAAACGGAAATGGGAAGCCGATTATTCCTGTTGTGAACGAGCGGACACTGCCCAAGTTCTTGGAATCGGCACGGTTGGCGAAATCGGTTAACAGAAGTAGTTCCAGGCTCAAATTGTTTTCTGGCACAGCAAATCCTGCTCTTTCCCAGGAAATCGCTTGGTACATGGGTTTGGAGCTTGGAAAGATCAACATAAAGAGGTTTGCTGATGGTGAAGTATATGTTCAGTTGGGAGAGAGTGTTAGAGGATGTGATGTATTCTTATTGCAGCCAACCTGCCCTCCTGTAAATGAGAACCTCATGGAGCTACAAATTATAATTGATGCATGTCGGAGGGCATCGGCCAGAAATATTACTGCAACTCAAGGGCGTGAATCCATAGCAGCCAAACTGGTTGCAAACCTCGTCACTATGGCAGGTGCAGACCGTGTTCTTGCTTGTGACATTCATTCTGGGCAGTCAATAGGTTACTTTGATATACCAGTGGATCATGTATATTGTGAGCATGTTATCCTTGATTACCTAGCCAGCAAGGCAATTTGTTCTGATGATTTGGTGGTGGTATCCCCTGATGTTGGGGGAGTTGCAAGAGCACGTGCTTTTGCAAAAAAACTGTCTGATGCACCTTTAGCCATAATAGACAAAGGCGTCATGGACACAATATTGCGGAGCCCTCCTGCAATTGAAAGGTTATCGAGTGGCCTGTTTCAAGAGGTGATTGTAACGAACACAATCCCTGTTGCAGAGAAGAATTACTTCCCTCAGCTGACTATCCTTTCAGTAGCTAACCTGTTGGGTGAGACCATTTGGCGTGTTCATGATGATTCTTCTGTGAGTAGCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

339

Amino Acids

36.58

Weight (kDa)

6.53

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 93 - 196 1.7e-33 N-terminal domain of ribose phosphate pyrophosphokinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AarI CACCTGC 1 cut(s) 575
AasI GACNNNNNNGTC 1 cut(s) 815
Acc36I ACCTGC 2 cut(s) 452, 575
AccBSI CCGCTC 1 cut(s) 211
AccII CGCG 2 cut(s) 84, 107
AciI CCGC 4 cut(s) 47, 84, 211, 835
AclWI GGATC 1 cut(s) 663
AcoI YGGCCR 2 cut(s) 85, 510
AcsI RAATTY 1 cut(s) 113
AcvI CACGTG 1 cut(s) 764
AcyI GRCGYC 1 cut(s) 816
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 173, 743
AgsI TTSAA 2 cut(s) 854, 878
AjnI CCWGG 2 cut(s) 272, 315
AluBI AGCT 4 cut(s) 346, 475, 934, 953
AluI AGCT 4 cut(s) 346, 475, 934, 953
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 3 cut(s) 66, 75, 962
AlwI GGATC 1 cut(s) 663
AoxI GGCC 3 cut(s) 85, 510, 868
ApeKI GCWGC 4 cut(s) 5, 56, 436, 551
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
Asp700I GAANNNNTTC 2 cut(s) 268, 923
AspLEI GCGC 1 cut(s) 107
AsuHPI GGTGA 3 cut(s) 392, 895, 977
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BanII GRGCYC 1 cut(s) 842
BbrPI CACGTG 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 763
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 3 cut(s) 43, 448, 563
BccI CCATC 2 cut(s) 46, 371
BceAI ACGGC 2 cut(s) 7, 60
BciT130I CCWGG 2 cut(s) 274, 317
BciVI GTATCC 1 cut(s) 742
BcoDI GTCTC 3 cut(s) 66, 75, 962
BfaI CTAG 1 cut(s) 692
BfuAI ACCTGC 2 cut(s) 452, 575
BfuI GTATCC 1 cut(s) 742
BglI GCCNNNNNGGC 1 cut(s) 701
BisI GCNGC 6 cut(s) 6, 48, 57, 85, 437, 552
BlsI GCNGC 6 cut(s) 7, 49, 58, 86, 438, 553
Bme1390I CCNGG 2 cut(s) 274, 317
BmiI GGNNCC 2 cut(s) 121, 839
BmrFI CCNGG 2 cut(s) 274, 317
BmsI GCATC 3 cut(s) 481, 515, 778
BpiI GAAGAC 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 930
BpuEI CTTGAG 1 cut(s) 516
BsaAI YACGTR 1 cut(s) 764
BsaHI GRCGYC 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 962
BsaJI CCNNGG 2 cut(s) 42, 315
BsaXI ACNNNNNCTCC 4 cut(s) 393, 423, 433, 463
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 743
Bse1I ACTGG 2 cut(s) 564, 650
BseBI CCWGG 2 cut(s) 274, 317
BseDI CCNNGG 2 cut(s) 42, 315
BseGI GGATG 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 173, 743
BseMII CTCAG 1 cut(s) 944
BseNI ACTGG 2 cut(s) 564, 650
BseXI GCAGC 3 cut(s) 43, 448, 563
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 2 cut(s) 84, 107
BshFI GGCC 3 cut(s) 87, 512, 870
BsiHKAI GWGCWC 1 cut(s) 763
BslI CCNNNNNNNGG 2 cut(s) 173, 743
BsmAI GTCTC 3 cut(s) 66, 75, 962
BsmBI CGTCTC 2 cut(s) 66, 75
BsnI GGCC 3 cut(s) 87, 512, 870
Bso31I GGTCTC 1 cut(s) 962
Bsp1286I GDGCHC 2 cut(s) 763, 842
Bsp143I GATC 2 cut(s) 354, 655
BspACI CCGC 4 cut(s) 47, 84, 211, 835
BspANI GGCC 3 cut(s) 87, 512, 870
BspCNI CTCAG 1 cut(s) 943
BspFNI CGCG 2 cut(s) 84, 107
BspHI TCATGA 1 cut(s) 985
BspLI GGNNCC 2 cut(s) 121, 839
BspMI ACCTGC 2 cut(s) 452, 575
BspPI GGATC 1 cut(s) 663
BspTNI GGTCTC 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 211
BsrI ACTGG 2 cut(s) 564, 650
BssECI CCNNGG 2 cut(s) 42, 315
BssMI GATC 2 cut(s) 354, 655
BssNI GRCGYC 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 274, 317
Bst4CI ACNGT 4 cut(s) 143, 243, 596, 783
BstACI GRCGYC 1 cut(s) 816
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 764
BstC8I GCNNGC 3 cut(s) 30, 82, 697
BstDEI CTNAG 1 cut(s) 930
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 2 cut(s) 84, 107
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 357, 658
BstMAI GTCTC 3 cut(s) 66, 75, 962
BstMBI GATC 2 cut(s) 354, 655
BstMWI GCNNNNNNNGC 8 cut(s) 19, 53, 56, 217, 245, 305, 701, 797
BstNI CCWGG 2 cut(s) 274, 317
BstNSI RCATGY 2 cut(s) 498, 677
BstSCI CCNGG 2 cut(s) 272, 315
BstUI CGCG 2 cut(s) 84, 107
BstV1I GCAGC 3 cut(s) 43, 448, 563
BstV2I GAAGAC 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 3 cut(s) 87, 512, 870
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 422
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 2 cut(s) 215, 657
BveI ACCTGC 2 cut(s) 452, 575
Cac8I GCNNGC 3 cut(s) 30, 82, 697
CciI TCATGA 1 cut(s) 985
CfoI GCGC 1 cut(s) 107
CseI GACGC 3 cut(s) 21, 48, 805
Csp6I GTAC 1 cut(s) 331
CviAII CATG 8 cut(s) 19, 334, 469, 495, 659, 674, 820, 986
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 930
DpnI GATC 2 cut(s) 356, 657
DpnII GATC 2 cut(s) 354, 655
DrdI GACNNNNNNGTC 1 cut(s) 815
DseDI GACNNNNNNGTC 1 cut(s) 815
EaeI YGGCCR 2 cut(s) 85, 510
Eco24I GRGCYC 1 cut(s) 842
Eco31I GGTCTC 1 cut(s) 962
Eco72I CACGTG 1 cut(s) 764
EcoRII CCWGG 2 cut(s) 272, 315
EcoT22I ATGCAT 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 842
Esp3I CGTCTC 2 cut(s) 66, 75
FaeI CATG 8 cut(s) 22, 337, 472, 498, 662, 677, 823, 989
FalI AAGNNNNNCTT 2 cut(s) 908, 940
FatI CATG 8 cut(s) 18, 333, 468, 494, 658, 673, 819, 985
Fnu4HI GCNGC 6 cut(s) 6, 48, 57, 85, 437, 552
FokI GGATG 1 cut(s) 429
FriOI GRGCYC 1 cut(s) 842
Fsp4HI GCNGC 6 cut(s) 6, 48, 57, 85, 437, 552
FspBI CTAG 1 cut(s) 692
GlaI GCGC 1 cut(s) 106
GluI GCNGC 6 cut(s) 6, 48, 57, 85, 437, 552
HaeIII GGCC 3 cut(s) 87, 512, 870
HgaI GACGC 3 cut(s) 21, 48, 805
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 816
Hin1II CATG 8 cut(s) 22, 337, 472, 498, 662, 677, 823, 989
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 126, 233, 542, 992
HpaI GTTAAC 1 cut(s) 259
HphI GGTGA 3 cut(s) 392, 895, 977
Hpy166II GTNNAC 2 cut(s) 205, 259
Hpy188I TCNGA 3 cut(s) 501, 715, 787
Hpy188III TCNNGA 4 cut(s) 123, 137, 878, 986
Hpy8I GTNNAC 2 cut(s) 205, 259
Hpy99I CGWCG 2 cut(s) 28, 37
HpyCH4III ACNGT 4 cut(s) 143, 243, 596, 783
HpyCH4IV ACGT 1 cut(s) 763
HpyF10VI GCNNNNNNNGC 8 cut(s) 19, 53, 56, 217, 245, 305, 701, 797
HpyF3I CTNAG 1 cut(s) 930
HpySE526I ACGT 1 cut(s) 763
Hsp92I GRCGYC 1 cut(s) 816
Hsp92II CATG 8 cut(s) 22, 337, 472, 498, 662, 677, 823, 989
HspAI GCGC 1 cut(s) 105
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 354, 655
LmnI GCTCC 5 cut(s) 125, 139, 343, 472, 837
Lsp1109I GCAGC 3 cut(s) 43, 448, 563
LweI GCATC 3 cut(s) 481, 515, 778
MaeI CTAG 1 cut(s) 692
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 4 cut(s) 574, 608, 635, 889
MalI GATC 2 cut(s) 356, 657
MbiI CCGCTC 1 cut(s) 211
MboI GATC 2 cut(s) 354, 655
MboII GAAGA 3 cut(s) 30, 928, 987
MfeI CAATTG 1 cut(s) 849
MhlI GDGCHC 2 cut(s) 763, 842
MluCI AATT 8 cut(s) 94, 113, 281, 480, 486, 705, 849, 919
MmeI TCCRAC 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 496
MroXI GAANNNNTTC 2 cut(s) 268, 923
MseI TTAA 2 cut(s) 147, 258
MspA1I CMGCKG 1 cut(s) 934
MspR9I CCNGG 2 cut(s) 274, 317
MunI CAATTG 1 cut(s) 849
MvaI CCWGG 2 cut(s) 274, 317
MvnI CGCG 2 cut(s) 84, 107
MwoI GCNNNNNNNGC 8 cut(s) 19, 53, 56, 217, 245, 305, 701, 797
NdeII GATC 2 cut(s) 354, 655
NlaIII CATG 8 cut(s) 22, 337, 472, 498, 662, 677, 823, 989
NlaIV GGNNCC 2 cut(s) 121, 839
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 574, 608
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 2 cut(s) 498, 677
PagI TCATGA 1 cut(s) 985
PaqCI CACCTGC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 2 cut(s) 268, 923
PfeI GAWTC 4 cut(s) 126, 233, 542, 992
PkrI GCNGC 6 cut(s) 7, 49, 58, 86, 438, 553
PmaCI CACGTG 1 cut(s) 764
PmlI CACGTG 1 cut(s) 764
Ppu21I YACGTR 1 cut(s) 764
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 272, 315
PspCI CACGTG 1 cut(s) 764
PspGI CCWGG 2 cut(s) 272, 315
PspN4I GGNNCC 2 cut(s) 121, 839
PvuII CAGCTG 1 cut(s) 934
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 2 cut(s) 147, 258
SatI GCNGC 6 cut(s) 6, 48, 57, 85, 437, 552
Sau3AI GATC 2 cut(s) 354, 655
ScrFI CCNGG 2 cut(s) 274, 317
SduI GDGCHC 2 cut(s) 763, 842
SfaNI GCATC 3 cut(s) 481, 515, 778
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
Sse9I AATT 8 cut(s) 94, 113, 281, 480, 486, 705, 849, 919
SsiI CCGC 4 cut(s) 47, 84, 211, 835
SspI AATATT 2 cut(s) 520, 831
SspMI CTAG 1 cut(s) 692
StyD4I CCNGG 2 cut(s) 272, 315
TaaI ACNGT 4 cut(s) 143, 243, 596, 783
TaiI ACGT 1 cut(s) 766
TaqI TCGA 1 cut(s) 863
TasI AATT 8 cut(s) 94, 113, 281, 480, 486, 705, 849, 919
TauI GCSGC 2 cut(s) 50, 87
TfiI GAWTC 4 cut(s) 126, 233, 542, 992
Tru1I TTAA 2 cut(s) 147, 258
Tru9I TTAA 2 cut(s) 147, 258
TscAI CASTG 2 cut(s) 222, 657
TseFI GTSAC 2 cut(s) 574, 608
TseI GCWGC 4 cut(s) 5, 56, 436, 551
Tsp45I GTSAC 2 cut(s) 574, 608
TspDTI ATGAA 2 cut(s) 605, 974
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 222, 657
XapI RAATTY 1 cut(s) 113
XceI RCATGY 2 cut(s) 498, 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 2 cut(s) 268, 923
XspI CTAG 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.