Prupe.5G043200_v2.0.a1

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009863
Physical Location & Seq
Forward (+)
4755636 .. 4759836
4201 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G043200.1

Sequence Viewer

Length: 1221 bp
ATGGCGGCCTCACCACTCATTATGCCCACGTCTTCTTCGTCGTCGTCGTCAATGGCGTCGTCTTTTTCGTCTCTCTTCTCTCGCTGCTCTGTCAGCCATAAAACTCTGCTCCCCAACGACTCCGGCTCTCGAATCTACGCTCCTAATAGCGTCAAATGTGATATGGCTGAGCCAATTAAATACGGAAATGGGAAGCCAATCATTCCTATTGTTAACGAACGGACGCTGCCCAAGTTCTTGGAATCAGCACGCTTGGAGAAGTCAGTTAACAGAAGTAGTCCTAGGATCAAACTGTTTTCTGGCACAGCAAATCCTGCTCTCTCGCAGGAAATTGCTTGGTACATGGGATTGGAGCTTGGGAAGATCAACATAAAGCGCTTTGCAGATGGTGAAGTTTACGTCCAATTGGGAGAGAGTGTTAGAGGATGTGATGTATTCTTACTGCAGCCAACTTGCCCTCCTGTGAATGAGAACTTCATGGAGCTACAGATAGTAATTGATGCTTGTCGGAGGGCATCGGCTAAAAATATTACTGCAGTAATTCCATATTTCGGATATTCCAGAGCTGATAGAAAGACTCAAGGGCGTGAGTCCATTGCAGCCAAGCTGGCTGCAAACCTCATCACTGTAGCAGGTGCAGATCGTGTTCTTGCTTGTGACATTCACTCTGGGCAGTCAATAGGTTACTTTGATATACCAGTAGATCATGTATATTGCGAGCATGTGATCCTTGATTATCTTGCCAGCAAGACAATTTGTTCTGATGATTTGGTAGTGGTGTCCCCTGATGTTGGGGGAGTTGCAAGAGCACGTGCTTTTGCAAAAAAATTATCTGATGCACCTTTAGCCATTGTTGACAAAAGACGTCAAGGACACAATATTGCTGAGGTGATGAACTTGATTGGCGATGTAAAAGGAAAAGTTGCAGTTATGGTGGATGATATGATCGACACTGCTGGGACAATTTCAAAAGGTGCAGCTCTATTGCATCAAGAAGGGGCAAGGGAAGTCTATGCATGCTGTACTCATGCTGTGTTTAGCCCTCCTGCAATTGAAAGGTTGTCAAATGGCCTGTTTCAAGAGGTGATTGTAACGAACACAATTCCTGTTGCGGAGAAGAATTACTTTCCCCAGTTGACTGTGCTTTCAGTTGCAAACCTGTTGGGTGAAACTATTTGGCGTGTTCATGATGATACTTCTGTGAGTAGCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

407

Amino Acids

43.97

Weight (kDa)

7.06

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32380 AT1G32380 AT2G35390 AT2G35390 AT2G35390 AT2G35390
fragaria_vesca FvH4_5g21390
malus_domestica MD06G1028600.v1.1
prunus_persica Prupe.5G043200_v2.0.a1
pyrus_communis pycom06g02270
rosa_chinensis RchiOBHm_Chr7g0208781
rosa_laevigata RLG00000003197
rosa_multiflora Rmu_co8445915.1_g000001 Rmu_sc0013928.1_g000004 Rmu_sc0014960.1_g000001
rosa_roxburghii Rroxscaffold_3G00250280
rosa_rugosa Rorug07G0105700
rosa_samantha Rh7AG240800 Rh7BG235800 Rh7CG255400
rosa_wichuraiana Rw7G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
AatII GACGTC 1 cut(s) 868
Acc36I ACCTGC 1 cut(s) 623
AciI CCGC 2 cut(s) 5, 1112
AclWI GGATC 2 cut(s) 293, 721
AcvI CACGTG 1 cut(s) 812
AcyI GRCGYC 2 cut(s) 56, 865
AfaI GTAC 2 cut(s) 341, 1024
AfeI AGCGCT 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 551, 791
AgsI TTSAA 3 cut(s) 969, 1055, 1079
AjiI CACGTC 1 cut(s) 30
AluBI AGCT 5 cut(s) 355, 484, 566, 607, 980
AluI AGCT 5 cut(s) 355, 484, 566, 607, 980
Alw21I GWGCWC 1 cut(s) 811
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 2 cut(s) 293, 721
Aor51HI AGCGCT 1 cut(s) 377
AoxI GGCC 2 cut(s) 6, 1069
ApeKI GCWGC 6 cut(s) 84, 226, 445, 599, 611, 977
AspA2I CCTAGG 1 cut(s) 281
AspLEI GCGC 1 cut(s) 378
AsuHPI GGTGA 5 cut(s) 3, 401, 901, 1096, 1178
AvrII CCTAGG 1 cut(s) 281
BaeI ACNNNNGTAYC 2 cut(s) 1185, 1218
BbrPI CACGTG 1 cut(s) 812
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 811
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 6 cut(s) 71, 213, 457, 598, 611, 989
BccI CCATC 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 4 cut(s) 443, 485, 534, 627
BfoI RGCGCY 1 cut(s) 379
BfuAI ACCTGC 1 cut(s) 623
BglI GCCNNNNNGGC 1 cut(s) 608
BisI GCNGC 7 cut(s) 6, 85, 227, 446, 600, 612, 978
BlnI CCTAGG 1 cut(s) 281
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 7 cut(s) 7, 86, 228, 447, 601, 613, 979
BmgBI CACGTC 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 1126
BmsI GCATC 4 cut(s) 490, 524, 826, 997
BmuI ACTGGG 1 cut(s) 1126
BpiI GAAGAC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 885
Bpu1102I GCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 812
BsaHI GRCGYC 2 cut(s) 56, 865
BsaJI CCNNGG 1 cut(s) 281
BsaXI ACNNNNNCTCC 4 cut(s) 402, 432, 442, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 551, 791
Bse1I ACTGG 2 cut(s) 698, 1132
Bse3DI GCAATG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 431, 943
BseLI CCNNNNNNNGG 2 cut(s) 551, 791
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 2 cut(s) 159, 876
BseNI ACTGG 2 cut(s) 698, 1132
BseXI GCAGC 6 cut(s) 71, 213, 457, 598, 611, 989
BseYI CCCAGC 1 cut(s) 956
BsgI GTGCAG 2 cut(s) 657, 996
BshFI GGCC 2 cut(s) 8, 1071
BsiHKAI GWGCWC 1 cut(s) 811
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 766, 973
BslI CCNNNNNNNGG 2 cut(s) 551, 791
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 766, 973
BsnI GGCC 2 cut(s) 8, 1071
Bsp1286I GDGCHC 1 cut(s) 811
Bsp143I GATC 6 cut(s) 285, 363, 640, 703, 726, 945
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 2 cut(s) 5, 1112
BspANI GGCC 2 cut(s) 8, 1071
BspCNI CTCAG 2 cut(s) 160, 877
BspHI TCATGA 1 cut(s) 1186
BspMAI CTGCAG 2 cut(s) 447, 538
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 2 cut(s) 293, 721
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 2 cut(s) 698, 1132
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 6 cut(s) 285, 363, 640, 703, 726, 945
BssNI GRCGYC 2 cut(s) 56, 865
BssT1I CCWWGG 1 cut(s) 281
Bst4CI ACNGT 3 cut(s) 294, 628, 1141
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 2 cut(s) 56, 865
BstAPI GCANNNNNTGC 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 5 cut(s) 250, 609, 719, 745, 1018
BstDEI CTNAG 2 cut(s) 168, 885
BstF5I GGATG 2 cut(s) 431, 943
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 6 cut(s) 288, 366, 643, 706, 729, 948
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 6 cut(s) 285, 363, 640, 703, 726, 945
BstMWI GCNNNNNNNGC 4 cut(s) 93, 314, 608, 845
BstNSI RCATGY 2 cut(s) 725, 1020
BstSFI CTRYAG 4 cut(s) 443, 485, 534, 627
BstV1I GCAGC 6 cut(s) 71, 213, 457, 598, 611, 989
BstV2I GAAGAC 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 238
BsuRI GGCC 2 cut(s) 8, 1071
BtgZI GCGATG 1 cut(s) 921
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 2 cut(s) 431, 943
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 2 cut(s) 624, 951
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 5 cut(s) 250, 609, 719, 745, 1018
CciI TCATGA 1 cut(s) 1186
CfoI GCGC 1 cut(s) 378
CseI GACGC 3 cut(s) 45, 139, 232
Csp6I GTAC 2 cut(s) 340, 1023
CviAII CATG 7 cut(s) 343, 478, 707, 722, 1017, 1028, 1187
CviQI GTAC 2 cut(s) 340, 1023
DdeI CTNAG 2 cut(s) 168, 885
DpnI GATC 6 cut(s) 287, 365, 642, 705, 728, 947
DpnII GATC 6 cut(s) 285, 363, 640, 703, 726, 945
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 281
Eco47III AGCGCT 1 cut(s) 377
Eco72I CACGTG 1 cut(s) 812
EcoT14I CCWWGG 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 1018
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 7 cut(s) 346, 481, 710, 725, 1020, 1031, 1190
FalI AAGNNNNNCTT 2 cut(s) 1109, 1141
FaqI GGGAC 2 cut(s) 766, 973
FatI CATG 7 cut(s) 342, 477, 706, 721, 1016, 1027, 1186
Fnu4HI GCNGC 7 cut(s) 6, 85, 227, 446, 600, 612, 978
FokI GGATG 2 cut(s) 438, 950
Fsp4HI GCNGC 7 cut(s) 6, 85, 227, 446, 600, 612, 978
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 377
GluI GCNGC 7 cut(s) 6, 85, 227, 446, 600, 612, 978
GsaI CCCAGC 1 cut(s) 960
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 2 cut(s) 8, 1071
HapII CCGG 1 cut(s) 123
HgaI GACGC 3 cut(s) 45, 139, 232
HhaI GCGC 1 cut(s) 378
Hin1I GRCGYC 2 cut(s) 56, 865
Hin1II CATG 7 cut(s) 346, 481, 710, 725, 1020, 1031, 1190
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 4 cut(s) 214, 268, 856, 1137
HindII GTYRAC 4 cut(s) 214, 268, 856, 1137
HinfI GANTC 5 cut(s) 119, 132, 242, 577, 590
HpaI GTTAAC 2 cut(s) 214, 268
HpaII CCGG 1 cut(s) 123
HphI GGTGA 5 cut(s) 3, 401, 901, 1096, 1178
Hpy166II GTNNAC 5 cut(s) 214, 268, 397, 856, 1137
Hpy188I TCNGA 4 cut(s) 510, 554, 763, 835
Hpy188III TCNNGA 5 cut(s) 129, 561, 992, 1079, 1187
Hpy8I GTNNAC 5 cut(s) 214, 268, 397, 856, 1137
Hpy99I CGWCG 4 cut(s) 43, 46, 49, 61
HpyAV CCTTC 1 cut(s) 989
HpyCH4III ACNGT 3 cut(s) 294, 628, 1141
HpyCH4IV ACGT 4 cut(s) 29, 399, 811, 865
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 314, 608, 845
HpyF3I CTNAG 2 cut(s) 168, 885
HpySE526I ACGT 4 cut(s) 29, 399, 811, 865
Hsp92I GRCGYC 2 cut(s) 56, 865
Hsp92II CATG 7 cut(s) 346, 481, 710, 725, 1020, 1031, 1190
HspAI GCGC 1 cut(s) 376
KspAI GTTAAC 2 cut(s) 214, 268
Kzo9I GATC 6 cut(s) 285, 363, 640, 703, 726, 945
LmnI GCTCC 4 cut(s) 114, 145, 352, 481
Lsp1109I GCAGC 6 cut(s) 71, 213, 457, 598, 611, 989
LweI GCATC 4 cut(s) 490, 524, 826, 997
MaeI CTAG 1 cut(s) 282
MaeII ACGT 4 cut(s) 29, 399, 811, 865
MaeIII GTNAC 3 cut(s) 656, 683, 1090
MalI GATC 6 cut(s) 287, 365, 642, 705, 728, 947
MboI GATC 6 cut(s) 285, 363, 640, 703, 726, 945
MboII GAAGA 5 cut(s) 24, 27, 67, 373, 1129
MfeI CAATTG 2 cut(s) 404, 1050
MhlI GDGCHC 1 cut(s) 811
MlyI GAGTC 3 cut(s) 113, 571, 599
MmeI TCCRAC 1 cut(s) 488
MnlI CCTC 8 cut(s) 19, 416, 468, 504, 629, 880, 1053, 1075
Mph1103I ATGCAT 1 cut(s) 1018
MseI TTAA 3 cut(s) 177, 213, 267
MspI CCGG 1 cut(s) 123
MunI CAATTG 2 cut(s) 404, 1050
MwoI GCNNNNNNNGC 4 cut(s) 93, 314, 608, 845
NdeII GATC 6 cut(s) 285, 363, 640, 703, 726, 945
NlaIII CATG 7 cut(s) 346, 481, 710, 725, 1020, 1031, 1190
NmuCI GTSAC 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 1018
NspI RCATGY 2 cut(s) 725, 1020
PaeI GCATGC 1 cut(s) 1020
PagI TCATGA 1 cut(s) 1186
PaqCI CACCTGC 1 cut(s) 623
PcsI WCGNNNNNNNCGW 4 cut(s) 35, 44, 53, 65
PfeI GAWTC 2 cut(s) 132, 242
PkrI GCNGC 7 cut(s) 7, 86, 228, 447, 601, 613, 979
PleI GAGTC 3 cut(s) 113, 571, 598
PmaCI CACGTG 1 cut(s) 812
PmlI CACGTG 1 cut(s) 812
PpsI GAGTC 3 cut(s) 113, 571, 598
Ppu21I YACGTR 1 cut(s) 812
PspCI CACGTG 1 cut(s) 812
PspFI CCCAGC 1 cut(s) 956
PstI CTGCAG 2 cut(s) 447, 538
RsaI GTAC 2 cut(s) 341, 1024
RsaNI GTAC 2 cut(s) 340, 1023
SaqAI TTAA 3 cut(s) 177, 213, 267
SatI GCNGC 7 cut(s) 6, 85, 227, 446, 600, 612, 978
Sau3AI GATC 6 cut(s) 285, 363, 640, 703, 726, 945
SchI GAGTC 3 cut(s) 113, 571, 599
SduI GDGCHC 1 cut(s) 811
SfaNI GCATC 4 cut(s) 490, 524, 826, 997
SfcI CTRYAG 4 cut(s) 443, 485, 534, 627
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
SphI GCATGC 1 cut(s) 1020
SsiI CCGC 2 cut(s) 5, 1112
SspI AATATT 2 cut(s) 529, 880
SspMI CTAG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 3 cut(s) 294, 628, 1141
TaiI ACGT 4 cut(s) 32, 402, 814, 868
TaqI TCGA 2 cut(s) 130, 948
TatI WGTACW 1 cut(s) 1022
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 132, 242
Tru1I TTAA 3 cut(s) 177, 213, 267
Tru9I TTAA 3 cut(s) 177, 213, 267
TscAI CASTG 2 cut(s) 631, 958
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 6 cut(s) 84, 226, 445, 599, 611, 977
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 3 cut(s) 466, 908, 1175
TspGWI ACGGA 2 cut(s) 198, 235
TspRI CASTG 2 cut(s) 631, 958
XceI RCATGY 2 cut(s) 725, 1020
XmaJI CCTAGG 1 cut(s) 281
XspI CTAG 1 cut(s) 282
ZraI GACGTC 1 cut(s) 866
Zsp2I ATGCAT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.