AT1G32583

anther development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010768
Physical Location & Seq
Forward (+)
11785806 .. 11788286
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32583.2

Sequence Viewer

Length: 540 bp
ATGAGAATGGAACATATCTACAAATTCCAACATTGGCTCTTCTTCATAGGTCTTGGAGTGTTGCTGTCTCTTTCTCTGTCTGTGAAGGCCAATGACTTCGAAGGTTCCAATGATAGAAGAAGCATTGCTCTCAAGGCTAGAAGCTTCGTTTCCATAAACGAAAACCGCACCGCTCTTTCCAGAAAGCTACTACTCTCTCCCGACATTGGCGATGGGACCAACAGAATCGGACAAGATTGCTCAAAAGATGATATTGTTCTCTTTCAAGGCTCAACAAATCCACTTCCTAGTGGAGTTCCTTCATATACAGTTGAGATCTTCAACTCTTGTGTCTCGGATTGCAATATAGCAGAGATCCACGTCAGTTGTGGCTGGTTCAGCTCAGTCAGACTGGTTAACCCTCGAGTTTTCAGGCGACTCGACTACGACGATTGTCTGGTTAACGATGGTCAACCTCTTGGTCCTGGACAGTCACTCTCCTTTCAATATGCTAACAGCTTCTCTTACCCTCTCTCTGTTGCTTCAGTCTCTTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.88

Weight (kDa)

6.27

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 81 - 178 1.9e-41 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32583 AT1G32583
fragaria_vesca FvH4_3g00520
malus_domestica MD00G1057600.v1.1
prunus_persica Prupe.4G006300_v2.0.a1
pyrus_communis pycom05g32640
rosa_chinensis RchiOBHm_Chr5g0000721
rosa_laevigata RLG00000030889
rosa_multiflora Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii Rroxscaffold_1G00075510
rosa_rugosa Rorug04G0386100 Rorug04G0386100
rosa_samantha Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana Rw5G000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 173
AciI CCGC 2 cut(s) 166, 171
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 507
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 3 cut(s) 266, 322, 485
AjiI CACGTC 1 cut(s) 361
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 4 cut(s) 144, 187, 381, 498
AluI AGCT 4 cut(s) 144, 187, 381, 498
Alw26I GTCTC 3 cut(s) 72, 337, 532
AlwI GGATC 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 216, 461
AsuII TTCGAA 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 2 cut(s) 216, 461
BccI CCATC 2 cut(s) 206, 440
BciT130I CCWGG 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 72, 337, 532
BfaI CTAG 2 cut(s) 138, 288
BglII AGATCT 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 2 cut(s) 216, 461
BmeT110I CYCGRG 1 cut(s) 402
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 216, 461
BmiI GGNNCC 2 cut(s) 106, 217
BmrFI CCNGG 1 cut(s) 465
BoxI GACNNNNGTC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 396
BshFI GGCC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 3 cut(s) 72, 337, 532
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 2 cut(s) 315, 354
BspACI CCGC 2 cut(s) 166, 171
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 395
BspLI GGNNCC 2 cut(s) 106, 217
BspPI GGATC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 396
BssMI GATC 2 cut(s) 315, 354
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 310, 471
Bst6I CTCTTC 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 382
BstKTI GATC 2 cut(s) 318, 357
BstMAI GTCTC 3 cut(s) 72, 337, 532
BstMBI GATC 2 cut(s) 315, 354
BstMWI GCNNNNNNNGC 2 cut(s) 134, 378
BstNI CCWGG 1 cut(s) 465
BstPAI GACNNNNGTC 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 463
BstX2I RGATCY 2 cut(s) 315, 354
BstYI RGATCY 2 cut(s) 315, 354
BsuRI GGCC 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 216, 461
CspCI CAANNNNNGTGG 2 cut(s) 347, 382
CviJI RGCY 9 cut(s) 37, 89, 137, 144, 187, 270, 372, 381, 498
CviKI_1 RGCY 9 cut(s) 37, 89, 137, 144, 187, 270, 372, 381, 498
DdeI CTNAG 1 cut(s) 382
DpnI GATC 2 cut(s) 317, 356
DpnII GATC 2 cut(s) 315, 354
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco47I GGWCC 2 cut(s) 216, 461
Eco57I CTGAAG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 463
FaiI YATR 7 cut(s) 15, 47, 155, 304, 306, 347, 489
FaqI GGGAC 1 cut(s) 229
FspBI CTAG 2 cut(s) 138, 288
HaeIII GGCC 1 cut(s) 89
HincII GTYRAC 3 cut(s) 397, 442, 452
HindII GTYRAC 3 cut(s) 397, 442, 452
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 2 cut(s) 225, 417
HpaI GTTAAC 2 cut(s) 397, 442
Hpy166II GTNNAC 3 cut(s) 397, 442, 452
Hpy188I TCNGA 4 cut(s) 230, 337, 389, 539
Hpy188III TCNNGA 2 cut(s) 180, 200
Hpy8I GTNNAC 3 cut(s) 397, 442, 452
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 3 cut(s) 79, 95, 309
HpyCH4III ACNGT 2 cut(s) 310, 471
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 378
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 1 cut(s) 360
KspAI GTTAAC 2 cut(s) 397, 442
Kzo9I GATC 2 cut(s) 315, 354
LguI GCTCTTC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 193, 358, 377, 397, 422, 450, 477
MaeI CTAG 2 cut(s) 138, 288
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 471
MalI GATC 2 cut(s) 317, 356
MbiI CCGCTC 1 cut(s) 173
MboI GATC 2 cut(s) 315, 354
MboII GAAGA 4 cut(s) 31, 34, 129, 310
MflI RGATCY 2 cut(s) 315, 354
MluCI AATT 1 cut(s) 23
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 411, 465, 519
MseI TTAA 2 cut(s) 396, 441
MspR9I CCNGG 1 cut(s) 465
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 134, 378
NdeII GATC 2 cut(s) 315, 354
NlaIV GGNNCC 2 cut(s) 106, 217
NmuCI GTSAC 1 cut(s) 471
NspV TTCGAA 1 cut(s) 99
PaeR7I CTCGAG 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PfeI GAWTC 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 463
PleI GAGTC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 411
PshAI GACNNNNGTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 2 cut(s) 106, 217
PspPI GGNCC 2 cut(s) 216, 461
PspXI VCTCGAGB 1 cut(s) 402
PsuI RGATCY 2 cut(s) 315, 354
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 396, 441
Sau3AI GATC 2 cut(s) 315, 354
Sau96I GGNCC 2 cut(s) 216, 461
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 1 cut(s) 465
SetI ASST 8 cut(s) 52, 106, 146, 189, 363, 383, 457, 500
Sfr274I CTCGAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 99
SinI GGWCC 2 cut(s) 216, 461
SlaI CTCGAG 1 cut(s) 402
SmlI CTYRAG 2 cut(s) 131, 402
SmoI CTYRAG 2 cut(s) 131, 402
Sse9I AATT 1 cut(s) 23
SsiI CCGC 2 cut(s) 166, 171
SspMI CTAG 2 cut(s) 138, 288
StyD4I CCNGG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 310, 471
TaiI ACGT 1 cut(s) 363
TaqI TCGA 3 cut(s) 99, 403, 420
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 2 cut(s) 396, 441
Tru9I TTAA 2 cut(s) 396, 441
TseFI GTSAC 1 cut(s) 471
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 2 cut(s) 34, 291
VpaK11BI GGWCC 2 cut(s) 216, 461
XapI RAATTY 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 402
XspI CTAG 2 cut(s) 138, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.