Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010768

Physical Location & Seq

Genomic Coordinates Forward (+)

271075 .. 272975

Gene Structure 1901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCATCTAGGATCATCATGAGTTCATGGGGAGTACTGAAAAATATGAATGGCAGATGGAGATCAGTTTGCATAGCTTCTTTGGCTCTCAGTTTCATTTTTATGCTTCCTTTGCTCTTCCGTACACACATACATTCCTTCAGCAATTTCCTCGTGGTGGAGGACTTGTTTCACATGGGAGGAACTCAGCTGGGAACTGCAGCAGCTGGGGAAGTAGCAGATGGCATGAAGAGAATACTGGTCTTTACCAAGAAAAACACCAACGGTGCTGCCCCATTTGGAAATGGACCTGCTGGACCTGGTCGGAAGCTTTTGCAGTCTTCTGATGGAGATAGAGATGGAAATGGATCAGATGGAGATGGAGGTGGAGATGGATCTGGAAATGGAGATGGAGATGGATCATCAGATGGGGGTGACATGAATCGAGTTGGGACAGGATGTTCAAAGGACGACATAACAATCTTCCAAGGGGAAACAGCTCCACTCCCAAATGGAATTCCGGCATACACGGTTCAGATTGTCAATATGTGCGTCTCAGGTTGCAGCATCTCCGACATTCACATCAACTGTGGATGGTTCAGCTCCGCCCGCCTCGTCAATCCTAGAGTCTTCCGGCGCATGGACTACAACGACTGCCTAGTCAATGATGGTCAGCCTCTTGGCCCTGGACAAACCCTCTCTTTCCAATATGCCAATACCTTTCCTTACCCTCTTTCTGTTTCATCTGTTGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

25.84

Weight (kDa)

5.74

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	148 - 245	3.4e-42	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32583 AT1G32583
fragaria_vesca	FvH4_3g00520
malus_domestica	MD00G1057600.v1.1
prunus_persica	Prupe.4G006300_v2.0.a1
pyrus_communis	pycom05g32640
rosa_chinensis	RchiOBHm_Chr5g0000721
rosa_laevigata	RLG00000030889
rosa_multiflora	Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075510
rosa_rugosa	Rorug04G0386100 Rorug04G0386100
rosa_samantha	Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana	Rw5G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	298
AciI	CCGC	2 cut(s)	585, 589
AclWI	GGATC	4 cut(s)	20, 355, 382, 406
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	36, 124
AfiI	CCNNNNNNNGG	2 cut(s)	157, 619
AgsI	TTSAA	1 cut(s)	444
AjnI	CCWGG	2 cut(s)	298, 664
AloI	GAACNNNNNNTCC	2 cut(s)	424, 456
AluBI	AGCT	6 cut(s)	77, 190, 206, 310, 479, 582
AluI	AGCT	6 cut(s)	77, 190, 206, 310, 479, 582
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	4 cut(s)	20, 355, 382, 406
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	661
ApeKI	GCWGC	4 cut(s)	200, 203, 269, 543
ApoI	RAATTY	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	3 cut(s)	287, 296, 662
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	287, 296
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	2 cut(s)	312, 601
BbvI	GCAGC	4 cut(s)	212, 215, 256, 555
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	2 cut(s)	300, 666
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	3 cut(s)	9, 603, 638
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	201, 204, 270, 544
BlsI	GCNGC	4 cut(s)	202, 205, 271, 545
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	300, 666
Bme18I	GGWCC	2 cut(s)	287, 296
BmgT120I	GGNCC	3 cut(s)	287, 296, 662
BmrFI	CCNGG	2 cut(s)	300, 666
BmsI	GCATC	2 cut(s)	14, 555
BpiI	GAAGAC	2 cut(s)	312, 601
BsaBI	GATNNNNATC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	466, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 619
Bse1I	ACTGG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	300, 666
BseDI	CCNNGG	2 cut(s)	466, 664
BseGI	GGATG	2 cut(s)	443, 578
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	157, 619
BseMII	CTCAG	3 cut(s)	103, 200, 549
BseNI	ACTGG	1 cut(s)	243
BseXI	GCAGC	4 cut(s)	212, 215, 256, 555
BseYI	CCCAGC	2 cut(s)	190, 206
BshFI	GGCC	1 cut(s)	663
BsiSI	CCGG	2 cut(s)	500, 613
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	157, 619
BsmAI	GTCTC	1 cut(s)	538
BsmBI	CGTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	663
Bsp143I	GATC	5 cut(s)	12, 62, 347, 374, 398
BspACI	CCGC	2 cut(s)	585, 589
BspANI	GGCC	1 cut(s)	663
BspCNI	CTCAG	3 cut(s)	102, 199, 548
BspHI	TCATGA	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	4 cut(s)	20, 355, 382, 406
BspQI	GCTCTTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	466, 664
BssMI	GATC	5 cut(s)	12, 62, 347, 374, 398
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	300, 666
Bst4CI	ACNGT	3 cut(s)	266, 511, 569
Bst6I	CTCTTC	2 cut(s)	122, 224
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	3 cut(s)	89, 186, 535
BstF5I	GGATG	2 cut(s)	443, 578
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	5 cut(s)	15, 65, 350, 377, 401
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	5 cut(s)	12, 62, 347, 374, 398
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 112, 588
BstNI	CCWGG	2 cut(s)	300, 666
BstSCI	CCNGG	2 cut(s)	298, 664
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	212, 215, 256, 555
BstV2I	GAAGAC	2 cut(s)	312, 601
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	663
BtsCI	GGATG	2 cut(s)	443, 578
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	589
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	618
Cfr13I	GGNCC	3 cut(s)	287, 296, 662
CseI	GACGC	1 cut(s)	520
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	35, 123
CviAII	CATG	6 cut(s)	19, 27, 175, 226, 418, 619
CviJI	RGCY	9 cut(s)	77, 86, 190, 206, 310, 479, 582, 655, 663
CviKI_1	RGCY	9 cut(s)	77, 86, 190, 206, 310, 479, 582, 655, 663
CviQI	GTAC	2 cut(s)	35, 123
DdeI	CTNAG	3 cut(s)	89, 186, 535
DpnI	GATC	5 cut(s)	14, 64, 349, 376, 400
DpnII	GATC	5 cut(s)	12, 62, 347, 374, 398
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	2 cut(s)	122, 224
EarI	CTCTTC	2 cut(s)	122, 224
EciI	GGCGGA	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	287, 296
Eco57I	CTGAAG	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	298, 664
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	538
FaeI	CATG	6 cut(s)	22, 30, 178, 229, 421, 622
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	6 cut(s)	18, 26, 174, 225, 417, 618
FauI	CCCGC	1 cut(s)	596
Fnu4HI	GCNGC	4 cut(s)	201, 204, 270, 544
FokI	GGATG	2 cut(s)	450, 585
Fsp4HI	GCNGC	4 cut(s)	201, 204, 270, 544
FspBI	CTAG	3 cut(s)	9, 603, 638
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	4 cut(s)	201, 204, 270, 544
GsaI	CCCAGC	2 cut(s)	194, 210
HaeIII	GGCC	1 cut(s)	663
HapII	CCGG	2 cut(s)	500, 613
HgaI	GACGC	1 cut(s)	520
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	6 cut(s)	22, 30, 178, 229, 421, 622
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	2 cut(s)	421, 606
HpaII	CCGG	2 cut(s)	500, 613
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	6 cut(s)	306, 325, 352, 406, 516, 553
Hpy188III	TCNNGA	2 cut(s)	19, 378
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	266, 511, 569
HpyCH4V	TGCA	4 cut(s)	72, 200, 316, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 112, 588
HpyF3I	CTNAG	3 cut(s)	89, 186, 535
Hsp92II	CATG	6 cut(s)	22, 30, 178, 229, 421, 622
HspAI	GCGC	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	12, 62, 347, 374, 398
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	484, 587
Lsp1109I	GCAGC	4 cut(s)	212, 215, 256, 555
LweI	GCATC	2 cut(s)	14, 555
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	3 cut(s)	9, 603, 638
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	5 cut(s)	14, 64, 349, 376, 400
MboI	GATC	5 cut(s)	12, 62, 347, 374, 398
MboII	GAAGA	5 cut(s)	109, 241, 312, 454, 601
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	2 cut(s)	145, 495
MlyI	GAGTC	1 cut(s)	615
MmeI	TCCRAC	2 cut(s)	284, 576
MnlI	CCTC	8 cut(s)	154, 161, 173, 356, 602, 666, 686, 720
MseI	TTAA	1 cut(s)	736
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	2 cut(s)	190, 206
MspI	CCGG	2 cut(s)	500, 613
MspR9I	CCNGG	2 cut(s)	300, 666
MvaI	CCWGG	2 cut(s)	300, 666
MwoI	GCNNNNNNNGC	3 cut(s)	83, 112, 588
NdeII	GATC	5 cut(s)	12, 62, 347, 374, 398
NlaIII	CATG	6 cut(s)	22, 30, 178, 229, 421, 622
NmuCI	GTSAC	1 cut(s)	413
PagI	TCATGA	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	421
PflFI	GACNNNGTC	1 cut(s)	300
PkrI	GCNGC	4 cut(s)	202, 205, 271, 545
PleI	GAGTC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	298, 664
PspFI	CCCAGC	2 cut(s)	190, 206
PspGI	CCWGG	2 cut(s)	298, 664
PspPI	GGNCC	3 cut(s)	287, 296, 662
PstI	CTGCAG	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	374
PsyI	GACNNNGTC	1 cut(s)	300
PvuII	CAGCTG	2 cut(s)	190, 206
RsaI	GTAC	2 cut(s)	36, 124
RsaNI	GTAC	2 cut(s)	35, 123
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	736
SatI	GCNGC	4 cut(s)	201, 204, 270, 544
Sau3AI	GATC	5 cut(s)	12, 62, 347, 374, 398
Sau96I	GGNCC	3 cut(s)	287, 296, 662
ScaI	AGTACT	1 cut(s)	36
SchI	GAGTC	1 cut(s)	615
ScrFI	CCNGG	2 cut(s)	300, 666
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	14, 555
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	287, 296
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	145, 495
SsiI	CCGC	2 cut(s)	585, 589
SspMI	CTAG	3 cut(s)	9, 603, 638
StyD4I	CCNGG	2 cut(s)	298, 664
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	266, 511, 569
TaqI	TCGA	1 cut(s)	424
TasI	AATT	2 cut(s)	145, 495
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	736
Tru9I	TTAA	1 cut(s)	736
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	4 cut(s)	200, 203, 269, 543
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	6 cut(s)	15, 62, 85, 242, 434, 711
TspGWI	ACGGA	1 cut(s)	110
Tth111I	GACNNNGTC	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	287, 296
XapI	RAATTY	1 cut(s)	495
XspI	CTAG	3 cut(s)	9, 603, 638
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.