Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010768

Physical Location & Seq

Genomic Coordinates Forward (+)

534139 .. 534459

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAATCGAGTTGGGAAAGCATGCTCAAAGGACGACATAACAATCTTCCAAGGGGAAACGGCTCCACTCCCAAGTGGAATTCCGGCTTACACAGTTCAGATCCTCAACACGTGCGTCTCAGGTTGCAGCATCTCTGACATTCACATCAACTGTGGATGGTTTAGCTCCGCCCGCCTTGTCAATCCTAGAGTCTTCAGGCGCATGGACTACAACGACTGCCTAGTCAATGATGGTCAGCCTCTTGGCCCTGGACAAACCCTCTCTTTCCAATATGCCAATAGCTTTCGTTACTCTCTTTCTGTTTCATCTGTAGCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.54

Weight (kDa)

7.57

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	9 - 106	6e-43	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32583 AT1G32583
fragaria_vesca	FvH4_3g00520
malus_domestica	MD00G1057600.v1.1
prunus_persica	Prupe.4G006300_v2.0.a1
pyrus_communis	pycom05g32640
rosa_chinensis	RchiOBHm_Chr5g0000721
rosa_laevigata	RLG00000030889
rosa_multiflora	Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075510
rosa_rugosa	Rorug04G0386100 Rorug04G0386100
rosa_samantha	Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana	Rw5G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AciI	CCGC	2 cut(s)	168, 172
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	178
AcvI	CACGTG	1 cut(s)	111
AflIII	ACRYGT	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	3 cut(s)	165, 282, 314
AluI	AGCT	3 cut(s)	165, 282, 314
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	245
BbrPI	CACGTG	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	2 cut(s)	150, 224
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	186, 221
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	49, 247
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	49, 247
BseGI	GGATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	138
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	2 cut(s)	168, 172
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	49, 247
BssMI	GATC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	94, 152
BstBAI	YACGTR	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	22, 172
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	22, 172
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	103
CviAII	CATG	2 cut(s)	21, 202
CviJI	RGCY	7 cut(s)	62, 86, 165, 238, 246, 282, 314
CviKI_1	RGCY	7 cut(s)	62, 86, 165, 238, 246, 282, 314
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	178
Eco72I	CACGTG	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	2 cut(s)	24, 205
FaiI	YATR	4 cut(s)	22, 38, 203, 273
FatI	CATG	2 cut(s)	20, 201
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	2 cut(s)	186, 221
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	24, 205
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	4, 189
HpaII	CCGG	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	99, 136
HpyCH4III	ACNGT	2 cut(s)	94, 152
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	24, 205
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	67, 170
LpnPI	CCDG	5 cut(s)	96, 105, 181, 234, 261
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	186, 221
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	2 cut(s)	37, 184
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	3 cut(s)	113, 249, 269
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	24, 205
NlaIV	GGNNCC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	197
PmaCI	CACGTG	1 cut(s)	111
PmlI	CACGTG	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	247
PspCI	CACGTG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	99
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	5 cut(s)	113, 124, 167, 284, 316
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	2 cut(s)	168, 172
SspMI	CTAG	2 cut(s)	186, 221
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	94, 152
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	7
TasI	AATT	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	17, 294
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	2 cut(s)	186, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.