Rh5BG007600

cell fate commitment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010768
Physical Location & Seq
Forward (+)
533229 .. 533784
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG007600.1

Sequence Viewer

Length: 237 bp
ATGGCAGTAGTACTGGAGGACTTGTTTCACATGGGAGGAACTCAGGGTACTGCAGCAGCTGGGGAAATAGATGACATTAAGAGACTAGTGGTCTTTACCAAGAAAAACACCAACACTGCCGCCCTATTTGGACCTCGACCTGGTCGGAAGCTGTTGCAGTCATCTGGTAATTACATAGAAGTACATAGTGGAAGACTGGAGGTTCAGACAAGATTGGGCCTTGTGTCCCGAGATTAA

Protein Analysis

78

Amino Acids

8.45

Weight (kDa)

9.39

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32583 AT1G32583
fragaria_vesca FvH4_3g00520
malus_domestica MD00G1057600.v1.1
prunus_persica Prupe.4G006300_v2.0.a1
pyrus_communis pycom05g32640
rosa_chinensis RchiOBHm_Chr5g0000721
rosa_laevigata RLG00000030889
rosa_multiflora Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii Rroxscaffold_1G00075510
rosa_rugosa Rorug04G0386100 Rorug04G0386100
rosa_samantha Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana Rw5G000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 120
AfaI GTAC 3 cut(s) 12, 49, 183
AfiI CCNNNNNNNGG 1 cut(s) 140
AhdI GACNNNNNGTC 1 cut(s) 89
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 59, 151
AluI AGCT 2 cut(s) 59, 151
Alw26I GTCTC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 53, 56
AspS9I GGNCC 2 cut(s) 131, 217
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 65, 68
BciT130I CCWGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 76
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 3 cut(s) 54, 57, 120
BlsI GCNGC 3 cut(s) 55, 58, 121
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 131, 217
BmrFI CCNGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 2 cut(s) 35, 218
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 18, 201
BseBI CCWGG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 18, 201
BseXI GCAGC 2 cut(s) 65, 68
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 228
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 55
BsrI ACTGG 2 cut(s) 18, 201
Bst2UI CCWGG 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 65, 68
BstV2I GAAGAC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
CaiI CAGNNNCTG 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 131, 217
CsiI ACCWGGT 1 cut(s) 139
Csp6I GTAC 3 cut(s) 11, 48, 182
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 59, 151, 219
CviKI_1 RGCY 3 cut(s) 59, 151, 219
CviQI GTAC 3 cut(s) 11, 48, 182
DdeI CTNAG 1 cut(s) 42
DriI GACNNNNNGTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 176, 186
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 54, 57, 120
Fsp4HI GCNGC 3 cut(s) 54, 57, 120
FspBI CTAG 1 cut(s) 86
GluI GCNGC 3 cut(s) 54, 57, 120
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 2 cut(s) 35, 218
HaeIII GGCC 1 cut(s) 219
Hin1II CATG 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 147, 207
Hpy188III TCNNGA 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 53, 157
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 1 cut(s) 34
LpnPI CCDG 6 cut(s) 29, 45, 126, 150, 153, 182
Lsp1109I GCAGC 2 cut(s) 65, 68
MabI ACCWGGT 1 cut(s) 139
MaeI CTAG 1 cut(s) 86
MboII GAAGA 1 cut(s) 204
MluCI AATT 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 4 cut(s) 10, 29, 144, 193
MseI TTAA 2 cut(s) 78, 235
MspA1I CMGCKG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
NlaIII CATG 1 cut(s) 34
PflFI GACNNNGTC 1 cut(s) 141
PkrI GCNGC 3 cut(s) 55, 58, 121
Psp6I CCWGG 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 139
PspPI GGNCC 2 cut(s) 131, 217
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
PstI CTGCAG 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 3 cut(s) 12, 49, 183
RsaNI GTAC 3 cut(s) 11, 48, 182
SaqAI TTAA 2 cut(s) 78, 235
SatI GCNGC 3 cut(s) 54, 57, 120
Sau96I GGNCC 2 cut(s) 131, 217
ScaI AGTACT 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 141
SetI ASST 5 cut(s) 61, 136, 142, 153, 204
SexAI ACCWGGT 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 139
TaqI TCGA 1 cut(s) 136
TasI AATT 1 cut(s) 169
TatI WGTACW 2 cut(s) 10, 181
TauI GCSGC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 78, 235
Tru9I TTAA 2 cut(s) 78, 235
TscAI CASTG 1 cut(s) 121
TseI GCWGC 2 cut(s) 53, 56
TspRI CASTG 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 131
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.