Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010768

Physical Location & Seq

Genomic Coordinates Forward (+)

396768 .. 396947

Gene Structure 180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG006300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGCAGTAGTGGAGGACTCGTTTCACATGGGAGGAACTCAGGGTACTGCAGCAGCTGGAGAAATAGATGACATTAAGAGACTAGTGGTCTTTACCAAGAAAAACACCAACACTGCCGCCCTATTTGGACCTCGACCTGGTCGGAAGCTGTTGCAGTCATCTGGTAATGTAATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

59

Amino Acids

6.23

Weight (kDa)

9.52

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32583 AT1G32583
fragaria_vesca	FvH4_3g00520
malus_domestica	MD00G1057600.v1.1
prunus_persica	Prupe.4G006300_v2.0.a1
pyrus_communis	pycom05g32640
rosa_chinensis	RchiOBHm_Chr5g0000721
rosa_laevigata	RLG00000030889
rosa_multiflora	Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075510
rosa_rugosa	Rorug04G0386100 Rorug04G0386100
rosa_samantha	Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana	Rw5G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	137
AhdI	GACNNNNNGTC	1 cut(s)	86
AhlI	ACTAGT	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	56, 148
AluI	AGCT	2 cut(s)	56, 148
Alw26I	GTCTC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	50, 53
AspS9I	GGNCC	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	62, 65
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	73
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	3 cut(s)	51, 54, 117
BlsI	GCNGC	3 cut(s)	52, 55, 118
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	62, 65
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	62, 65
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	128
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	2 cut(s)	56, 148
CviKI_1	RGCY	2 cut(s)	56, 148
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	39
DriI	GACNNNNNGTC	1 cut(s)	86
Eam1105I	GACNNNNNGTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	31
FaiI	YATR	1 cut(s)	29
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	51, 54, 117
Fsp4HI	GCNGC	3 cut(s)	51, 54, 117
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	3 cut(s)	51, 54, 117
GsuI	CTGGAG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	50, 154
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	31
LpnPI	CCDG	5 cut(s)	26, 42, 123, 147, 150
Lsp1109I	GCAGC	2 cut(s)	62, 65
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	1 cut(s)	83
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	3 cut(s)	7, 26, 141
MseI	TTAA	2 cut(s)	75, 178
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
NlaIII	CATG	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	52, 55, 118
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	28, 60
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	75, 178
SatI	GCNGC	3 cut(s)	51, 54, 117
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	4 cut(s)	58, 133, 139, 150
SexAI	ACCWGGT	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	136
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	75, 178
Tru9I	TTAA	2 cut(s)	75, 178
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	2 cut(s)	50, 53
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	128
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.