Prupe.4G006300_v2.0.a1

anther development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010768
Physical Location & Seq
Forward (+)
342490 .. 344501
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G006300.1

Sequence Viewer

Length: 591 bp
ATGAGATTGAGAGGTGTACTGATGAATGGCTGCAGCAGGAGACTTTTCATAGCTAATTCTGTGGCCTTGATGATCATCTGTTTCGGTTTTATTATGATGCTTATTGCTTTGTTCTTCGTGATTGATCACTTGGGAAGTAGTGTTGGGGAAGCAGTTGGCATTAATAATAACAGGCTGGTCTTTTCCAATGAAAGCCACACTGCAGGCCTTGGTCATCGGAAGCTGTTGCAGTCAACTGGTGATGCAGATGATGATGGAGGAGGAGACATGAATCGTATTGGGGCAGCATGCTCAAAAGACGACATAGTGATATTGCAAGGCCAAACAGCCCCACTTCCCAATGGAATTCCAGCCTACACGGTTGAGATCCTGAACGCCTGCGTTCCGGGTTGCAGCATATCCAACATTCACGTCAGCTGTGGGTGGTTTAGCTCAGCCCGGCTGGTCAATCCAAAAGTGTTTAGACGCAAAGACTTTGATGACTGCCTAGTCAATGATGGTGAGGCTCTAGGCCCTGGAGAAACCCTCTCTTTCCAGTATGCCAACAGTTTCCGCTACCCTCTATCAGTTTCATCTGTAGTTTGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.04

Weight (kDa)

6.04

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32583 AT1G32583
fragaria_vesca FvH4_3g00520
malus_domestica MD00G1057600.v1.1
prunus_persica Prupe.4G006300_v2.0.a1
pyrus_communis pycom05g32640
rosa_chinensis RchiOBHm_Chr5g0000721
rosa_laevigata RLG00000030889
rosa_multiflora Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii Rroxscaffold_1G00075510
rosa_rugosa Rorug04G0386100 Rorug04G0386100
rosa_samantha Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana Rw5G000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 488
AciI CCGC 1 cut(s) 553
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 1 cut(s) 345
AfaI GTAC 1 cut(s) 18
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 4 cut(s) 53, 223, 417, 432
AluI AGCT 4 cut(s) 53, 223, 417, 432
Alw26I GTCTC 2 cut(s) 34, 258
AlwI GGATC 1 cut(s) 361
AoxI GGCC 4 cut(s) 63, 205, 319, 511
ApeKI GCWGC 5 cut(s) 30, 33, 284, 393, 585
ApoI RAATTY 1 cut(s) 345
AseI ATTAAT 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 2 cut(s) 387, 439
AsuHPI GGTGA 2 cut(s) 251, 512
BbvI GCAGC 5 cut(s) 17, 45, 296, 405, 572
BccI CCATC 2 cut(s) 248, 491
BciT130I CCWGG 1 cut(s) 516
BclI TGATCA 2 cut(s) 72, 124
BcnI CCSGG 2 cut(s) 387, 439
BcoDI GTCTC 2 cut(s) 34, 258
BfaI CTAG 2 cut(s) 488, 509
BfmI CTRYAG 3 cut(s) 31, 201, 576
BisI GCNGC 5 cut(s) 31, 34, 285, 394, 586
BlpI GCTNAGC 1 cut(s) 433
BlsI GCNGC 5 cut(s) 32, 35, 286, 395, 587
Bme1390I CCNGG 3 cut(s) 387, 439, 516
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 512
BmrFI CCNGG 3 cut(s) 387, 439, 516
BmsI GCATC 2 cut(s) 87, 232
BplI GAGNNNNNCTC 2 cut(s) 510, 542
BpmI CTGGAG 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 433
BpuMI CCSGG 2 cut(s) 387, 439
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 208, 514
Bse1I ACTGG 2 cut(s) 241, 535
Bse8I GATNNNNATC 1 cut(s) 74
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 208, 514
BseJI GATNNNNATC 1 cut(s) 74
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 241, 535
BseRI GAGGAG 2 cut(s) 273, 276
BseXI GCAGC 5 cut(s) 17, 45, 296, 405, 572
BshFI GGCC 4 cut(s) 65, 207, 321, 513
BsiSI CCGG 2 cut(s) 386, 439
BsmAI GTCTC 2 cut(s) 34, 258
BsnI GGCC 4 cut(s) 65, 207, 321, 513
Bsp143I GATC 3 cut(s) 72, 124, 366
Bsp1720I GCTNAGC 1 cut(s) 433
BspACI CCGC 1 cut(s) 553
BspANI GGCC 4 cut(s) 65, 207, 321, 513
BspCNI CTCAG 1 cut(s) 446
BspMAI CTGCAG 2 cut(s) 35, 205
BspPI GGATC 1 cut(s) 361
BsrI ACTGG 2 cut(s) 241, 535
BssECI CCNNGG 2 cut(s) 208, 514
BssMI GATC 3 cut(s) 72, 124, 366
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 2 cut(s) 361, 548
BstC8I GCNNGC 3 cut(s) 205, 289, 379
BstDEI CTNAG 1 cut(s) 433
BstKTI GATC 3 cut(s) 75, 127, 369
BstMAI GTCTC 2 cut(s) 34, 258
BstMBI GATC 3 cut(s) 72, 124, 366
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 3 cut(s) 385, 437, 514
BstSFI CTRYAG 3 cut(s) 31, 201, 576
BstV1I GCAGC 5 cut(s) 17, 45, 296, 405, 572
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 4 cut(s) 65, 207, 321, 513
BtrI CACGTC 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 3 cut(s) 205, 289, 379
Cfr13I GGNCC 1 cut(s) 512
CseI GACGC 1 cut(s) 474
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 268, 288
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 433
DpnI GATC 3 cut(s) 74, 126, 368
DpnII GATC 3 cut(s) 72, 124, 366
DrdI GACNNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 2 cut(s) 271, 291
FaiI YATR 7 cut(s) 50, 95, 269, 289, 305, 398, 540
FatI CATG 2 cut(s) 267, 287
FbaI TGATCA 2 cut(s) 72, 124
Fnu4HI GCNGC 5 cut(s) 31, 34, 285, 394, 586
Fsp4HI GCNGC 5 cut(s) 31, 34, 285, 394, 586
FspBI CTAG 2 cut(s) 488, 509
GluI GCNGC 5 cut(s) 31, 34, 285, 394, 586
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 4 cut(s) 65, 207, 321, 513
HapII CCGG 2 cut(s) 386, 439
HgaI GACGC 1 cut(s) 474
Hin1II CATG 2 cut(s) 271, 291
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 1 cut(s) 271
HpaII CCGG 2 cut(s) 386, 439
HphI GGTGA 2 cut(s) 251, 512
Hpy166II GTNNAC 2 cut(s) 17, 234
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 118, 370
Hpy8I GTNNAC 2 cut(s) 17, 234
HpyCH4III ACNGT 2 cut(s) 361, 548
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 6 cut(s) 33, 203, 229, 245, 316, 393
HpyF3I CTNAG 1 cut(s) 433
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 2 cut(s) 271, 291
Ksp22I TGATCA 2 cut(s) 72, 124
Kzo9I GATC 3 cut(s) 72, 124, 366
Lsp1109I GCAGC 5 cut(s) 17, 45, 296, 405, 572
LweI GCATC 2 cut(s) 87, 232
MaeI CTAG 2 cut(s) 488, 509
MaeII ACGT 1 cut(s) 411
MalI GATC 3 cut(s) 74, 126, 368
MboI GATC 3 cut(s) 72, 124, 366
MboII GAAGA 1 cut(s) 106
MflI RGATCY 1 cut(s) 366
MluCI AATT 2 cut(s) 55, 345
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 6 cut(s) 5, 251, 254, 496, 536, 570
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 2 cut(s) 386, 439
MspR9I CCNGG 3 cut(s) 387, 439, 516
MvaI CCWGG 1 cut(s) 516
NciI CCSGG 2 cut(s) 387, 439
NdeII GATC 3 cut(s) 72, 124, 366
NlaIII CATG 2 cut(s) 271, 291
NspI RCATGY 1 cut(s) 291
PaeI GCATGC 1 cut(s) 291
PceI AGGCCT 1 cut(s) 207
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 5 cut(s) 32, 35, 286, 395, 587
PshBI ATTAAT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspPI GGNCC 1 cut(s) 512
PstI CTGCAG 2 cut(s) 35, 205
PsuI RGATCY 1 cut(s) 366
PvuII CAGCTG 1 cut(s) 417
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 5 cut(s) 31, 34, 285, 394, 586
Sau3AI GATC 3 cut(s) 72, 124, 366
Sau96I GGNCC 1 cut(s) 512
ScrFI CCNGG 3 cut(s) 387, 439, 516
SetI ASST 6 cut(s) 16, 55, 225, 414, 419, 434
SfaNI GCATC 2 cut(s) 87, 232
SfcI CTRYAG 3 cut(s) 31, 201, 576
SphI GCATGC 1 cut(s) 291
Sse9I AATT 2 cut(s) 55, 345
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 1 cut(s) 553
SspMI CTAG 2 cut(s) 488, 509
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 385, 437, 514
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 361, 548
TaiI ACGT 1 cut(s) 414
TasI AATT 2 cut(s) 55, 345
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 205
TseI GCWGC 5 cut(s) 30, 33, 284, 393, 585
TspDTI ATGAA 5 cut(s) 37, 38, 204, 284, 561
TspRI CASTG 1 cut(s) 205
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 1 cut(s) 345
XceI RCATGY 1 cut(s) 291
XspI CTAG 2 cut(s) 488, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.