Rw5G000600

cell fate commitment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010768
Physical Location & Seq
Forward (+)
425949 .. 427774
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G000600.1

Sequence Viewer

Length: 645 bp
ATGAGTTCAGGAGGAGTACTGAAAAGAGTGAATGGCAGATGGAGATCAGTTTGCATAGCTTCTTTGGCTCTCTGTTTCGTTTTTATGCTTCCTTTGCTCTTCGTAGTGGAGGACTTGCTTCACATGGGAGGAACTCAGGGTACTGCAGCAGCTGGGGAAATAGATGGCATTAAGAGACTAGTGGTCTTTACCAAGAAAAACACCAACACTGCCGCCCTATTTGGACCTCGACCTGGTCGGAAGCTGTTGCAGTCATCTGATGGAGATGGAGATGGGGAAGGATCAGATGGAAATGGAAATGGAGATGGATCAGATGGGGGTGACATGAATCGAGTTGGGAAAGCATGCTCAAAGGACGACATAACAATCTTCCAAGGGGAAACGGCTCCACTCCCAAGTGGAATTCCGGCTTACACAGTTCAGATCCTCAACACGTGCGTCTCAGGTTGCAGCATCTCTGACATTCACATCAACTGTGGATGGTTTAGCTCCGCCCGCCTTGTCAATCCTAGAGTCTTCAGGCGCATGGACTACAACGACTGCCTAGTCAATGATGGTCAGCCTCTTGGCCCTGGACAAACCCTCTCTTTCCAATATGCCAATAGCTTTCGTTACCCTCTTTCTGTTTCGTCTGTAGCTTGTTAG

Protein Analysis

214

Amino Acids

22.66

Weight (kDa)

6.7

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 117 - 214 1.5e-42 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32583 AT1G32583
fragaria_vesca FvH4_3g00520
malus_domestica MD00G1057600.v1.1
prunus_persica Prupe.4G006300_v2.0.a1
pyrus_communis pycom05g32640
rosa_chinensis RchiOBHm_Chr5g0000721
rosa_laevigata RLG00000030889
rosa_multiflora Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii Rroxscaffold_1G00075510
rosa_rugosa Rorug04G0386100 Rorug04G0386100
rosa_samantha Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana Rw5G000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
AciI CCGC 3 cut(s) 213, 492, 496
AclWI GGATC 3 cut(s) 289, 316, 418
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 502
AcvI CACGTG 1 cut(s) 435
AfaI GTAC 2 cut(s) 18, 142
AfiI CCNNNNNNNGG 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 432
AhdI GACNNNNNGTC 1 cut(s) 182
AhlI ACTAGT 1 cut(s) 178
AjnI CCWGG 2 cut(s) 232, 571
AluBI AGCT 6 cut(s) 59, 152, 244, 489, 606, 638
AluI AGCT 6 cut(s) 59, 152, 244, 489, 606, 638
Alw26I GTCTC 2 cut(s) 169, 445
AlwI GGATC 3 cut(s) 289, 316, 418
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 1 cut(s) 568
ApeKI GCWGC 3 cut(s) 146, 149, 450
ApoI RAATTY 1 cut(s) 402
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 224, 569
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 224
BbrPI CACGTG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 508
BbvI GCAGC 3 cut(s) 158, 161, 462
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 2 cut(s) 234, 573
BcoDI GTCTC 2 cut(s) 169, 445
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 3 cut(s) 179, 510, 545
BfmI CTRYAG 2 cut(s) 144, 633
BisI GCNGC 4 cut(s) 147, 150, 213, 451
BlsI GCNGC 4 cut(s) 148, 151, 214, 452
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 234, 573
Bme18I GGWCC 1 cut(s) 224
BmeRI GACNNNNNGTC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 224, 569
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 2 cut(s) 234, 573
BmsI GCATC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 508
BsaAI YACGTR 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 373, 571
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 43
BseBI CCWGG 2 cut(s) 234, 573
BseDI CCNNGG 2 cut(s) 373, 571
BseGI GGATG 1 cut(s) 485
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 149, 456
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 158, 161, 462
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 570
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 169, 445
BsmBI CGTCTC 1 cut(s) 445
BsnI GGCC 1 cut(s) 570
Bsp143I GATC 4 cut(s) 44, 281, 308, 423
BspACI CCGC 3 cut(s) 213, 492, 496
BspANI GGCC 1 cut(s) 570
BspCNI CTCAG 2 cut(s) 148, 455
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 3 cut(s) 289, 316, 418
BspQI GCTCTTC 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 373, 571
BssMI GATC 4 cut(s) 44, 281, 308, 423
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 2 cut(s) 234, 573
Bst4CI ACNGT 2 cut(s) 418, 476
Bst6I CTCTTC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 346, 496
BstDEI CTNAG 2 cut(s) 135, 442
BstF5I GGATG 1 cut(s) 485
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 4 cut(s) 47, 284, 311, 426
BstMAI GTCTC 2 cut(s) 169, 445
BstMBI GATC 4 cut(s) 44, 281, 308, 423
BstMWI GCNNNNNNNGC 3 cut(s) 65, 94, 495
BstNI CCWGG 2 cut(s) 234, 573
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 232, 571
BstSFI CTRYAG 2 cut(s) 144, 633
BstV1I GCAGC 3 cut(s) 158, 161, 462
BstV2I GAAGAC 1 cut(s) 508
BstX2I RGATCY 1 cut(s) 423
BstYI RGATCY 1 cut(s) 423
BsuRI GGCC 1 cut(s) 570
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 346, 496
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 224, 569
CseI GACGC 1 cut(s) 427
CsiI ACCWGGT 1 cut(s) 232
Csp6I GTAC 2 cut(s) 17, 141
CviAII CATG 4 cut(s) 124, 325, 345, 526
CviQI GTAC 2 cut(s) 17, 141
DdeI CTNAG 2 cut(s) 135, 442
DpnI GATC 4 cut(s) 46, 283, 310, 425
DpnII GATC 4 cut(s) 44, 281, 308, 423
DrdI GACNNNNNNGTC 1 cut(s) 545
DriI GACNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 545
Eam1104I CTCTTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 502
Eco72I CACGTG 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 232, 571
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 445
FaeI CATG 4 cut(s) 127, 328, 348, 529
FaiI YATR 8 cut(s) 56, 86, 125, 326, 346, 362, 527, 597
FatI CATG 4 cut(s) 123, 324, 344, 525
FauI CCCGC 1 cut(s) 503
Fnu4HI GCNGC 4 cut(s) 147, 150, 213, 451
FokI GGATG 1 cut(s) 492
Fsp4HI GCNGC 4 cut(s) 147, 150, 213, 451
FspBI CTAG 3 cut(s) 179, 510, 545
GlaI GCGC 1 cut(s) 524
GluI GCNGC 4 cut(s) 147, 150, 213, 451
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 570
HapII CCGG 1 cut(s) 407
HgaI GACGC 1 cut(s) 427
HhaI GCGC 1 cut(s) 525
Hin1II CATG 4 cut(s) 127, 328, 348, 529
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 2 cut(s) 328, 513
HpaII CCGG 1 cut(s) 407
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 6 cut(s) 240, 259, 286, 313, 423, 460
Hpy188III TCNNGA 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 2 cut(s) 418, 476
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 54, 146, 250, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 94, 495
HpyF3I CTNAG 2 cut(s) 135, 442
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 4 cut(s) 127, 328, 348, 529
HspAI GCGC 1 cut(s) 523
Kzo9I GATC 4 cut(s) 44, 281, 308, 423
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 391, 494
LpnPI CCDG 9 cut(s) 122, 138, 219, 246, 420, 429, 505, 558, 585
Lsp1109I GCAGC 3 cut(s) 158, 161, 462
LweI GCATC 1 cut(s) 462
MabI ACCWGGT 1 cut(s) 232
MaeI CTAG 3 cut(s) 179, 510, 545
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 2 cut(s) 320, 611
MalI GATC 4 cut(s) 46, 283, 310, 425
MboI GATC 4 cut(s) 44, 281, 308, 423
MboII GAAGA 3 cut(s) 91, 361, 508
MflI RGATCY 1 cut(s) 423
MluCI AATT 1 cut(s) 402
MlyI GAGTC 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 8 cut(s) 5, 103, 122, 237, 437, 573, 593, 627
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 2 cut(s) 234, 573
MvaI CCWGG 2 cut(s) 234, 573
MwoI GCNNNNNNNGC 3 cut(s) 65, 94, 495
NdeII GATC 4 cut(s) 44, 281, 308, 423
NlaIII CATG 4 cut(s) 127, 328, 348, 529
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 1 cut(s) 348
PaeI GCATGC 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 234
PkrI GCNGC 4 cut(s) 148, 151, 214, 452
PleI GAGTC 1 cut(s) 521
PmaCI CACGTG 1 cut(s) 435
PmlI CACGTG 1 cut(s) 435
PpsI GAGTC 1 cut(s) 521
Ppu21I YACGTR 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 232, 571
PspCI CACGTG 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 232, 571
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 2 cut(s) 224, 569
PsrI GAACNNNNNNTAC 2 cut(s) 124, 156
PstI CTGCAG 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 1 cut(s) 423
PsyI GACNNNGTC 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 18, 142
RsaNI GTAC 2 cut(s) 17, 141
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 4 cut(s) 147, 150, 213, 451
Sau3AI GATC 4 cut(s) 44, 281, 308, 423
Sau96I GGNCC 2 cut(s) 224, 569
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 2 cut(s) 234, 573
SexAI ACCWGGT 1 cut(s) 232
SfaNI GCATC 1 cut(s) 462
SfcI CTRYAG 2 cut(s) 144, 633
SinI GGWCC 1 cut(s) 224
SpeI ACTAGT 1 cut(s) 178
SphI GCATGC 1 cut(s) 348
Sse9I AATT 1 cut(s) 402
SsiI CCGC 3 cut(s) 213, 492, 496
SspMI CTAG 3 cut(s) 179, 510, 545
StyD4I CCNGG 2 cut(s) 232, 571
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 418, 476
TaiI ACGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 229, 331
TasI AATT 1 cut(s) 402
TatI WGTACW 1 cut(s) 16
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 3 cut(s) 146, 149, 450
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 402
XceI RCATGY 1 cut(s) 348
XspI CTAG 3 cut(s) 179, 510, 545
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.