Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010768

Physical Location & Seq

Genomic Coordinates Forward (+)

431057 .. 433268

Gene Structure 2212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCATCTGGGATCATCACGAGCTCAGGAGGAGTACTGAAAAGTGTGAACGGCAGATGGAGATCAGTTTGCATAGCTTCTTTGGCTCTCTGTTTCGTTTTTATGCTTCCTTTGCTCTTCGTAGTGGAGGACTTGTTTCACATGGGAGGAACTCAGGGTACTGCAGCAGCTGGGGAAATAGATGACATTAAGAGACTAGTGGTCTTTACCAAGAAAAACACCAACACTGCCGCCCTATTTGGACCTCGACCTGGTCGGAAGCTGTTGCAGTCATCTGATGGAGATGGAGATGGAGATGGAGATGGATCAGATGAAAATGGGGATGGAGAAGGATCAGATGGAGATGGGGATGGATCAGATGGAAATGGAAATGGAAATGGAGATGGATCAGATGGGGGTGACATGAATCGAGTTGGGAAAGCATGCTCAAAGGACGACATAACAATCTTCCAAGGGGAAACGGCTCCACTCCCAAGTGGAATTCCGGCTTACACAGTTCAGATCCTCAACACGTGCGTCTCAGGTTGCAGCATCTCTGACATTCACATCAACTGTGGATGGTTTAGCTCCGCCCGCCTTGTCAATCCTAGAGTCTTCAGGCGCATGGACTACAACGACTGCCTAGTCAATGATGGTCAGCCTCTTGGCCCTGGACAAACCCTCTCTTTCCAATATGCCAATAGCTTTCGTTACCCTCTTTCTGTTTCATCTGTAGCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

25.02

Weight (kDa)

4.53

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	143 - 240	2e-42	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32583 AT1G32583
fragaria_vesca	FvH4_3g00520
malus_domestica	MD00G1057600.v1.1
prunus_persica	Prupe.4G006300_v2.0.a1
pyrus_communis	pycom05g32640
rosa_chinensis	RchiOBHm_Chr5g0000721
rosa_laevigata	RLG00000030889
rosa_multiflora	Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075510
rosa_rugosa	Rorug04G0386100 Rorug04G0386100
rosa_samantha	Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana	Rw5G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	623
AciI	CCGC	3 cut(s)	231, 570, 574
AclWI	GGATC	6 cut(s)	20, 313, 340, 361, 394, 496
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	580
AcvI	CACGTG	1 cut(s)	513
AfaI	GTAC	2 cut(s)	36, 160
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	510
AhdI	GACNNNNNGTC	1 cut(s)	200
AhlI	ACTAGT	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	250, 649
AluBI	AGCT	7 cut(s)	24, 77, 170, 262, 567, 684, 716
AluI	AGCT	7 cut(s)	24, 77, 170, 262, 567, 684, 716
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	187, 523
AlwI	GGATC	6 cut(s)	20, 313, 340, 361, 394, 496
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	646
ApeKI	GCWGC	3 cut(s)	164, 167, 528
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	242, 647
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	19
BbrPI	CACGTG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	176, 179, 540
BceAI	ACGGC	2 cut(s)	67, 477
BciT130I	CCWGG	2 cut(s)	252, 651
BcoDI	GTCTC	2 cut(s)	187, 523
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	3 cut(s)	197, 588, 623
BfmI	CTRYAG	2 cut(s)	162, 711
BisI	GCNGC	4 cut(s)	165, 168, 231, 529
BlsI	GCNGC	4 cut(s)	166, 169, 232, 530
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	252, 651
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	242, 647
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	252, 651
BmsI	GCATC	2 cut(s)	14, 540
BpiI	GAAGAC	1 cut(s)	586
Bpu10I	CCTNAGC	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	451, 649
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	252, 651
BseDI	CCNNGG	2 cut(s)	451, 649
BseGI	GGATG	3 cut(s)	328, 355, 563
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	3 cut(s)	39, 167, 534
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	176, 179, 540
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	187, 523
BsmBI	CGTCTC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	648
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	7 cut(s)	12, 62, 305, 332, 353, 386, 501
BspACI	CCGC	3 cut(s)	231, 570, 574
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	3 cut(s)	38, 166, 533
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	6 cut(s)	20, 313, 340, 361, 394, 496
BspQI	GCTCTTC	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	451, 649
BssMI	GATC	7 cut(s)	12, 62, 305, 332, 353, 386, 501
BssSI	CACGAG	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	451
Bst2BI	CACGAG	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	252, 651
Bst4CI	ACNGT	2 cut(s)	496, 554
Bst6I	CTCTTC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	424, 574
BstDEI	CTNAG	3 cut(s)	25, 153, 520
BstF5I	GGATG	3 cut(s)	328, 355, 563
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	7 cut(s)	15, 65, 308, 335, 356, 389, 504
BstMAI	GTCTC	2 cut(s)	187, 523
BstMBI	GATC	7 cut(s)	12, 62, 305, 332, 353, 386, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 112, 573
BstNI	CCWGG	2 cut(s)	252, 651
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	2 cut(s)	250, 649
BstSFI	CTRYAG	2 cut(s)	162, 711
BstV1I	GCAGC	3 cut(s)	176, 179, 540
BstV2I	GAAGAC	1 cut(s)	586
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	648
BtsCI	GGATG	3 cut(s)	328, 355, 563
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	424, 574
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	242, 647
CseI	GACGC	1 cut(s)	505
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	35, 159
CviAII	CATG	4 cut(s)	142, 403, 423, 604
CviQI	GTAC	2 cut(s)	35, 159
DdeI	CTNAG	3 cut(s)	25, 153, 520
DpnI	GATC	7 cut(s)	14, 64, 307, 334, 355, 388, 503
DpnII	GATC	7 cut(s)	12, 62, 305, 332, 353, 386, 501
DrdI	GACNNNNNNGTC	1 cut(s)	623
DriI	GACNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	623
Eam1104I	CTCTTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	559
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	580
Eco72I	CACGTG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	250, 649
EcoT14I	CCWWGG	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	4 cut(s)	145, 406, 426, 607
FaiI	YATR	8 cut(s)	74, 104, 143, 404, 424, 440, 605, 675
FatI	CATG	4 cut(s)	141, 402, 422, 603
FauI	CCCGC	1 cut(s)	581
Fnu4HI	GCNGC	4 cut(s)	165, 168, 231, 529
FokI	GGATG	3 cut(s)	335, 362, 570
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	165, 168, 231, 529
FspBI	CTAG	3 cut(s)	197, 588, 623
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	4 cut(s)	165, 168, 231, 529
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	648
HapII	CCGG	1 cut(s)	485
HgaI	GACGC	1 cut(s)	505
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	4 cut(s)	145, 406, 426, 607
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HinfI	GANTC	2 cut(s)	406, 591
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	8 cut(s)	258, 277, 310, 337, 358, 391, 501, 538
Hpy188III	TCNNGA	2 cut(s)	19, 27
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	496, 554
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	4 cut(s)	72, 164, 268, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 112, 573
HpyF3I	CTNAG	3 cut(s)	25, 153, 520
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	4 cut(s)	145, 406, 426, 607
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	7 cut(s)	12, 62, 305, 332, 353, 386, 501
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	469, 572
Lsp1109I	GCAGC	3 cut(s)	176, 179, 540
LweI	GCATC	2 cut(s)	14, 540
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	3 cut(s)	197, 588, 623
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	2 cut(s)	398, 689
MalI	GATC	7 cut(s)	14, 64, 307, 334, 355, 388, 503
MboI	GATC	7 cut(s)	12, 62, 305, 332, 353, 386, 501
MboII	GAAGA	3 cut(s)	109, 439, 586
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	8 cut(s)	23, 121, 140, 255, 515, 651, 671, 705
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	252, 651
MvaI	CCWGG	2 cut(s)	252, 651
MwoI	GCNNNNNNNGC	3 cut(s)	83, 112, 573
NdeII	GATC	7 cut(s)	12, 62, 305, 332, 353, 386, 501
NlaIII	CATG	4 cut(s)	145, 406, 426, 607
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	398
NspI	RCATGY	1 cut(s)	426
PaeI	GCATGC	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	406
PflFI	GACNNNGTC	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	166, 169, 232, 530
PleI	GAGTC	1 cut(s)	599
PmaCI	CACGTG	1 cut(s)	513
PmlI	CACGTG	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	599
Ppu21I	YACGTR	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	250, 649
PspCI	CACGTG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	2 cut(s)	250, 649
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	2 cut(s)	242, 647
PsrI	GAACNNNNNNTAC	2 cut(s)	142, 174
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	501
PsyI	GACNNNGTC	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	36, 160
RsaNI	GTAC	2 cut(s)	35, 159
SacI	GAGCTC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	165, 168, 231, 529
Sau3AI	GATC	7 cut(s)	12, 62, 305, 332, 353, 386, 501
Sau96I	GGNCC	2 cut(s)	242, 647
ScaI	AGTACT	1 cut(s)	36
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	2 cut(s)	252, 651
SduI	GDGCHC	1 cut(s)	26
SexAI	ACCWGGT	1 cut(s)	250
SfaNI	GCATC	2 cut(s)	14, 540
SfcI	CTRYAG	2 cut(s)	162, 711
SinI	GGWCC	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	196
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	3 cut(s)	231, 570, 574
SspMI	CTAG	3 cut(s)	197, 588, 623
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	250, 649
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	496, 554
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	2 cut(s)	247, 409
TasI	AATT	1 cut(s)	480
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	3 cut(s)	164, 167, 528
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	3 cut(s)	327, 419, 696
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	3 cut(s)	197, 588, 623
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.