Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010768

Physical Location & Seq

Genomic Coordinates Forward (+)

450971 .. 453455

Gene Structure 2485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030889

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCATCTGGGATCATCATGAGTTCAGGAGGAGTACTGAAAAGTGTGAATGGCAGATGGAGATCAGTTTGCATAGCTTCTTTGGCTCTCTGTTTCGTTTTTATGCTTCCTTTGCACTTCGTGAAGGACTTGTTTCACATGGAAGGAACTCAGGGTACTGCAGGAGCTGGGGAAATAGATGACATAAAGAGACTAGTGGTCTTTACCAAGAAAAACACCAACACTGCCGCCCTATTTGGACCTCGACCTGGTCGGAAGCTGTTGCAGTCATCTGATGGAGATGGAGATGGATCAGATGGAGATGGGAATGGAGAAGGATCAGATGGAGATGGAGATGGGGATGGATCAGATGGAAATGGAAATGGAGATGGATCAGATGGGGGTGACATGAATCGAGTTGGGAAAGCATGCTCAAAGGACGACATAACAATCTTCCAAGGGGAAACGGCTCCACTCCCAAGTGGAATTCCGGCTTACACAGTTCAGATCCTCAACACGTGCGTCTCAGGTTGTAGCATCTCTGACATTCACATCAACTGTGGATGGTTTAGCTCCGCCCGCCTTGTCAATCCTAGAGTCTTCAGGCGCATGGACTACAACGACTGCCTAGTCAATGATGGTCAGCCTCTTGGCCCTGGACAAACCCTCACTTTCCAATATGCCAATAGCTTTCGTTACCCTCTTTCTGTTTCATCTATAGCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

24.65

Weight (kDa)

4.85

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	138 - 235	4.9e-42	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32583 AT1G32583
fragaria_vesca	FvH4_3g00520
malus_domestica	MD00G1057600.v1.1
prunus_persica	Prupe.4G006300_v2.0.a1
pyrus_communis	pycom05g32640
rosa_chinensis	RchiOBHm_Chr5g0000721
rosa_laevigata	RLG00000030889
rosa_multiflora	Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075510
rosa_rugosa	Rorug04G0386100 Rorug04G0386100
rosa_samantha	Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana	Rw5G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	608
AciI	CCGC	3 cut(s)	228, 555, 559
AclWI	GGATC	6 cut(s)	20, 298, 325, 352, 379, 481
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	565
AcvI	CACGTG	1 cut(s)	498
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	2 cut(s)	36, 157
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	495
AhdI	GACNNNNNGTC	1 cut(s)	197
AhlI	ACTAGT	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	247, 634
AluBI	AGCT	6 cut(s)	77, 167, 259, 552, 669, 701
AluI	AGCT	6 cut(s)	77, 167, 259, 552, 669, 701
Alw26I	GTCTC	2 cut(s)	184, 508
AlwI	GGATC	6 cut(s)	20, 298, 325, 352, 379, 481
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	631
ApoI	RAATTY	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	2 cut(s)	239, 632
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	239
BbrPI	CACGTG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	571
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	2 cut(s)	249, 636
BcoDI	GTCTC	2 cut(s)	184, 508
BcuI	ACTAGT	1 cut(s)	193
BfaI	CTAG	3 cut(s)	194, 573, 608
BfmI	CTRYAG	2 cut(s)	159, 696
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	249, 636
Bme18I	GGWCC	1 cut(s)	239
BmeRI	GACNNNNNGTC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	239, 632
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	249, 636
BmsI	GCATC	2 cut(s)	14, 525
BpiI	GAAGAC	1 cut(s)	571
BsaAI	YACGTR	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	436, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	249, 636
BseDI	CCNNGG	2 cut(s)	436, 634
BseGI	GGATG	2 cut(s)	346, 548
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	164, 519
BseRI	GAGGAG	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	184, 508
BsmBI	CGTCTC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	633
Bsp143I	GATC	7 cut(s)	12, 62, 290, 317, 344, 371, 486
BspACI	CCGC	3 cut(s)	228, 555, 559
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	2 cut(s)	163, 518
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	450
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	6 cut(s)	20, 298, 325, 352, 379, 481
BssECI	CCNNGG	2 cut(s)	436, 634
BssMI	GATC	7 cut(s)	12, 62, 290, 317, 344, 371, 486
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	249, 636
Bst4CI	ACNGT	2 cut(s)	481, 539
BstBAI	YACGTR	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	409, 559
BstDEI	CTNAG	2 cut(s)	150, 505
BstF5I	GGATG	2 cut(s)	346, 548
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	7 cut(s)	15, 65, 293, 320, 347, 374, 489
BstMAI	GTCTC	2 cut(s)	184, 508
BstMBI	GATC	7 cut(s)	12, 62, 290, 317, 344, 371, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 112, 558
BstNI	CCWGG	2 cut(s)	249, 636
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	247, 634
BstSFI	CTRYAG	2 cut(s)	159, 696
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	346, 548
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	409, 559
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	588
Cfr13I	GGNCC	2 cut(s)	239, 632
CseI	GACGC	1 cut(s)	490
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	35, 156
CviAII	CATG	5 cut(s)	19, 139, 388, 408, 589
CviQI	GTAC	2 cut(s)	35, 156
DdeI	CTNAG	2 cut(s)	150, 505
DpnI	GATC	7 cut(s)	14, 64, 292, 319, 346, 373, 488
DpnII	GATC	7 cut(s)	12, 62, 290, 317, 344, 371, 486
DraIII	CACNNNGTG	1 cut(s)	121
DrdI	GACNNNNNNGTC	1 cut(s)	608
DriI	GACNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	608
Eam1105I	GACNNNNNGTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	565
Eco72I	CACGTG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	247, 634
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	5 cut(s)	22, 142, 391, 411, 592
FatI	CATG	5 cut(s)	18, 138, 387, 407, 588
FauI	CCCGC	1 cut(s)	566
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	353, 555
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	3 cut(s)	194, 573, 608
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	490
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	5 cut(s)	22, 142, 391, 411, 592
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HinfI	GANTC	2 cut(s)	391, 576
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	8 cut(s)	255, 274, 295, 322, 349, 376, 486, 523
Hpy188III	TCNNGA	3 cut(s)	19, 27, 121
HpyAV	CCTTC	3 cut(s)	118, 137, 308
HpyCH4III	ACNGT	2 cut(s)	481, 539
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	4 cut(s)	72, 115, 161, 265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 112, 558
HpyF3I	CTNAG	2 cut(s)	150, 505
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	5 cut(s)	22, 142, 391, 411, 592
HspAI	GCGC	1 cut(s)	586
Kzo9I	GATC	7 cut(s)	12, 62, 290, 317, 344, 371, 486
LmnI	GCTCC	3 cut(s)	164, 454, 557
LweI	GCATC	2 cut(s)	14, 525
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	3 cut(s)	194, 573, 608
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	2 cut(s)	383, 674
MalI	GATC	7 cut(s)	14, 64, 292, 319, 346, 373, 488
MboI	GATC	7 cut(s)	12, 62, 290, 317, 344, 371, 486
MboII	GAAGA	2 cut(s)	424, 571
MflI	RGATCY	1 cut(s)	486
MluCI	AATT	1 cut(s)	465
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	6 cut(s)	23, 252, 500, 636, 656, 690
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	249, 636
MvaI	CCWGG	2 cut(s)	249, 636
MwoI	GCNNNNNNNGC	3 cut(s)	83, 112, 558
NdeII	GATC	7 cut(s)	12, 62, 290, 317, 344, 371, 486
NlaIII	CATG	5 cut(s)	22, 142, 391, 411, 592
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	411
PagI	TCATGA	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	391
PflFI	GACNNNGTC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	584
PmaCI	CACGTG	1 cut(s)	498
PmlI	CACGTG	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	584
Ppu21I	YACGTR	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	247, 634
PspCI	CACGTG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	247, 634
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	2 cut(s)	239, 632
PsrI	GAACNNNNNNTAC	2 cut(s)	139, 171
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	486
PsyI	GACNNNGTC	1 cut(s)	249
RsaI	GTAC	2 cut(s)	36, 157
RsaNI	GTAC	2 cut(s)	35, 156
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	7 cut(s)	12, 62, 290, 317, 344, 371, 486
Sau96I	GGNCC	2 cut(s)	239, 632
ScaI	AGTACT	1 cut(s)	36
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	2 cut(s)	249, 636
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	14, 525
SfcI	CTRYAG	2 cut(s)	159, 696
SinI	GGWCC	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	193
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	1 cut(s)	465
SsiI	CCGC	3 cut(s)	228, 555, 559
SspMI	CTAG	3 cut(s)	194, 573, 608
StyD4I	CCNGG	2 cut(s)	247, 634
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	481, 539
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	2 cut(s)	244, 394
TasI	AATT	1 cut(s)	465
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	391
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	404, 681
TspRI	CASTG	1 cut(s)	229
Tth111I	GACNNNGTC	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	465
XceI	RCATGY	1 cut(s)	411
XspI	CTAG	3 cut(s)	194, 573, 608
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.