pycom05g32640

anther development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010768
Physical Location & Seq
Reverse (-)
31971252 .. 31971575
324 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32640.1

Sequence Viewer

Length: 324 bp
ATGAATCGTATCGGCACGGCATGCTCAAAGGACGACATAGTAATATTCCAAGGCCAAACAGCCCCACTTCCCAATGGAATTCCAACCTACACGGTTCAGATTCTCAACGCCTGCGTTTCAGGTTGCAGCATATCCGACATTCACGTCAGATGTGGATGGTTTAGCTCCGCCCGCCTGGTGAATCCCAGAGTTTTCAGGCGCAATGACTACGATGACTGCCTAGTCAATGATGGTGAGGCTCTTGGCCCCGGAGAAACCCTATCTTTCCAGTATGCCAACAGTTTCCGTTACCCTTTATCCGTTTCATCTGTAGTTTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.68

Weight (kDa)

5.6

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 9 - 107 3.2e-43 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32583 AT1G32583
fragaria_vesca FvH4_3g00520
malus_domestica MD00G1057600.v1.1
prunus_persica Prupe.4G006300_v2.0.a1
pyrus_communis pycom05g32640
rosa_chinensis RchiOBHm_Chr5g0000721
rosa_laevigata RLG00000030889
rosa_multiflora Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii Rroxscaffold_1G00075510
rosa_rugosa Rorug04G0386100 Rorug04G0386100
rosa_samantha Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana Rw5G000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 143, 221
AciI CCGC 2 cut(s) 168, 172
AcsI RAATTY 1 cut(s) 78
AjiI CACGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
AoxI GGCC 2 cut(s) 52, 244
ApeKI GCWGC 2 cut(s) 126, 318
ApoI RAATTY 1 cut(s) 78
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 2 cut(s) 190, 245
BbvI GCAGC 2 cut(s) 138, 305
BccI CCATC 2 cut(s) 150, 224
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 1 cut(s) 249
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 127, 319
BlsI GCNGC 2 cut(s) 128, 320
Bme1390I CCNGG 2 cut(s) 176, 249
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 176, 249
BpuMI CCSGG 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 49, 247
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 49, 247
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 2 cut(s) 138, 305
BshFI GGCC 2 cut(s) 54, 246
BsiSI CCGG 1 cut(s) 249
BsnI GGCC 2 cut(s) 54, 246
BspACI CCGC 2 cut(s) 168, 172
BspANI GGCC 2 cut(s) 54, 246
BspLI GGNNCC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 49, 247
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 94, 281
BstAPI GCANNNNNTGC 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 22, 112, 172
BstF5I GGATG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 21, 171
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 174, 247
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 138, 305
BsuRI GGCC 2 cut(s) 54, 246
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 22, 112, 172
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 245
CviAII CATG 1 cut(s) 21
CviJI RGCY 5 cut(s) 54, 62, 165, 239, 246
CviKI_1 RGCY 5 cut(s) 54, 62, 165, 239, 246
DrdI GACNNNNNNGTC 2 cut(s) 143, 221
DseDI GACNNNNNNGTC 2 cut(s) 143, 221
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 24
FaiI YATR 4 cut(s) 22, 38, 131, 273
FatI CATG 1 cut(s) 20
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 2 cut(s) 127, 319
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 127, 319
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 200
GluI GCNGC 2 cut(s) 127, 319
HaeIII GGCC 2 cut(s) 54, 246
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 24
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 3 cut(s) 4, 100, 181
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 190, 245
Hpy188I TCNGA 3 cut(s) 99, 136, 149
HpyCH4III ACNGT 2 cut(s) 94, 281
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 171
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 24
HspAI GCGC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 8 cut(s) 105, 124, 161, 181, 188, 199, 262, 281
Lsp1109I GCAGC 2 cut(s) 138, 305
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 287
MluCI AATT 1 cut(s) 78
MmeI TCCRAC 2 cut(s) 107, 159
MnlI CCTC 1 cut(s) 229
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 176, 249
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 21, 171
NciI CCSGG 1 cut(s) 249
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 247
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PfeI GAWTC 3 cut(s) 4, 100, 181
PkrI GCNGC 2 cut(s) 128, 320
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 245
SatI GCNGC 2 cut(s) 127, 319
Sau96I GGNCC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 176, 249
SetI ASST 4 cut(s) 89, 124, 147, 167
SfcI CTRYAG 1 cut(s) 309
SphI GCATGC 1 cut(s) 24
Sse9I AATT 1 cut(s) 78
SsiI CCGC 2 cut(s) 168, 172
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 174, 247
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 94, 281
TaiI ACGT 1 cut(s) 147
TasI AATT 1 cut(s) 78
TfiI GAWTC 3 cut(s) 4, 100, 181
TseI GCWGC 2 cut(s) 126, 318
TspDTI ATGAA 2 cut(s) 17, 294
TspGWI ACGGA 2 cut(s) 275, 289
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 24
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.