MD00G1057600.v1.1

anther development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0010768
Physical Location & Seq
Forward (+)
10612735 .. 10613127
393 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1057600.v1.1.491

Sequence Viewer

Length: 393 bp
ATGACAGATAAAATTTGCATAAAATTACTTGATGCAGACGAGGGTGGTGATGGAGGACCAGGAGGAGACGTGAATCGTATCGGCACGTCATGCTCAAAGGACGACATAGTAATATTCCAAGGCCAAACAGCCCCACTTCCCAATGGAATTCCAACCTACACGGTTCAGATTCTCAACGCCTGCGTTTCAGGTTGCAGCATATCCGACATTCACGTCAGATGTGGATGGTTTAGCTCCGCCCGCCTGGTGAATCCCAGAGTGTTCAGGCGCAATGACTACGATGACTGCCTGGTCAATGATGGTGAGGCTCTTGGCCCCGGAGAAACCCTATCTTTCCAGTATGCCAACAGTTTCCGTTACCCTTTATCCGTTTCATCTGTAGTTTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.93

Weight (kDa)

4.59

Isoelectric Point (pI)

28.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 32 - 130 6.3e-43 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32583 AT1G32583
fragaria_vesca FvH4_3g00520
malus_domestica MD00G1057600.v1.1
prunus_persica Prupe.4G006300_v2.0.a1
pyrus_communis pycom05g32640
rosa_chinensis RchiOBHm_Chr5g0000721
rosa_laevigata RLG00000030889
rosa_multiflora Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii Rroxscaffold_1G00075510
rosa_rugosa Rorug04G0386100 Rorug04G0386100
rosa_samantha Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana Rw5G000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 212, 290
AciI CCGC 2 cut(s) 237, 241
AcsI RAATTY 2 cut(s) 12, 147
AjiI CACGTC 3 cut(s) 70, 87, 214
AjnI CCWGG 3 cut(s) 58, 243, 288
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 60
AoxI GGCC 2 cut(s) 121, 313
ApeKI GCWGC 2 cut(s) 195, 387
ApoI RAATTY 2 cut(s) 12, 147
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 56, 314
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 3 cut(s) 59, 259, 314
AvaII GGWCC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 207, 374
BccI CCATC 3 cut(s) 44, 219, 293
BciT130I CCWGG 3 cut(s) 60, 245, 290
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 2 cut(s) 196, 388
BlsI GCNGC 2 cut(s) 197, 389
Bme1390I CCNGG 4 cut(s) 60, 245, 290, 318
Bme18I GGWCC 1 cut(s) 56
BmgBI CACGTC 3 cut(s) 70, 87, 214
BmgT120I GGNCC 2 cut(s) 56, 314
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 4 cut(s) 60, 245, 290, 318
BmsI GCATC 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 118, 316
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 3 cut(s) 60, 245, 290
BseDI CCNNGG 2 cut(s) 118, 316
BseGI GGATG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 207, 374
BshFI GGCC 2 cut(s) 123, 315
BsiSI CCGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsnI GGCC 2 cut(s) 123, 315
BspACI CCGC 2 cut(s) 237, 241
BspANI GGCC 2 cut(s) 123, 315
BspLI GGNNCC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 118, 316
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 60, 245, 290
Bst4CI ACNGT 2 cut(s) 163, 350
BstAPI GCANNNNNTGC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 181, 241
BstF5I GGATG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 90, 240
BstNI CCWGG 3 cut(s) 60, 245, 290
BstSCI CCNGG 4 cut(s) 58, 243, 288, 316
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 207, 374
BsuRI GGCC 2 cut(s) 123, 315
BtrI CACGTC 3 cut(s) 70, 87, 214
BtsCI GGATG 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 181, 241
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 56, 314
CviAII CATG 1 cut(s) 90
CviJI RGCY 5 cut(s) 123, 131, 234, 308, 315
CviKI_1 RGCY 5 cut(s) 123, 131, 234, 308, 315
DrdI GACNNNNNNGTC 2 cut(s) 212, 290
DseDI GACNNNNNNGTC 2 cut(s) 212, 290
EciI GGCGGA 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 3 cut(s) 58, 243, 288
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 1 cut(s) 93
FaiI YATR 5 cut(s) 20, 91, 107, 200, 342
FatI CATG 1 cut(s) 89
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 196, 388
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 196, 388
GlaI GCGC 1 cut(s) 269
GluI GCNGC 2 cut(s) 196, 388
HaeIII GGCC 2 cut(s) 123, 315
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 93
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 3 cut(s) 73, 169, 250
HpaII CCGG 1 cut(s) 318
HphI GGTGA 3 cut(s) 59, 259, 314
Hpy188I TCNGA 3 cut(s) 168, 205, 218
HpyCH4III ACNGT 2 cut(s) 163, 350
HpyCH4IV ACGT 3 cut(s) 69, 86, 213
HpyCH4V TGCA 3 cut(s) 18, 35, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 240
HpySE526I ACGT 3 cut(s) 69, 86, 213
Hsp92II CATG 1 cut(s) 93
HspAI GCGC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 2 cut(s) 207, 374
LweI GCATC 1 cut(s) 22
MaeII ACGT 3 cut(s) 69, 86, 213
MaeIII GTNAC 1 cut(s) 356
MluCI AATT 3 cut(s) 12, 23, 147
MmeI TCCRAC 2 cut(s) 176, 228
MnlI CCTC 4 cut(s) 34, 47, 56, 298
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 4 cut(s) 60, 245, 290, 318
MvaI CCWGG 3 cut(s) 60, 245, 290
MwoI GCNNNNNNNGC 2 cut(s) 90, 240
NciI CCSGG 1 cut(s) 318
NlaIII CATG 1 cut(s) 93
NlaIV GGNNCC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 73, 169, 250
PkrI GCNGC 2 cut(s) 197, 389
Psp6I CCWGG 3 cut(s) 58, 243, 288
PspGI CCWGG 3 cut(s) 58, 243, 288
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 56, 314
SatI GCNGC 2 cut(s) 196, 388
Sau96I GGNCC 2 cut(s) 56, 314
ScrFI CCNGG 4 cut(s) 60, 245, 290, 318
SetI ASST 6 cut(s) 72, 89, 158, 193, 216, 236
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 56
Sse9I AATT 3 cut(s) 12, 23, 147
SsiI CCGC 2 cut(s) 237, 241
SspI AATATT 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 58, 243, 288, 316
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 163, 350
TaiI ACGT 3 cut(s) 72, 89, 216
TasI AATT 3 cut(s) 12, 23, 147
TfiI GAWTC 3 cut(s) 73, 169, 250
TseI GCWGC 2 cut(s) 195, 387
TspDTI ATGAA 1 cut(s) 363
TspGWI ACGGA 2 cut(s) 344, 358
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 2 cut(s) 12, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.