Rroxscaffold_1G00075510

cell fate commitment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010768
Physical Location & Seq
Reverse (-)
96233170 .. 96234301
1132 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00075510.1

Sequence Viewer

Length: 537 bp
ATGGGAGGAACTCAGGGTACTGCAGCAGCTGGGGAAATAGATGACATTAAGAGACTAGTGGTCTTTACCAAGGAAAACACCAACACTGCCGCCCTATTTGGACCTCGACCTGGTCGGAAGCTGTTGCAGTCATCTGATGGAGATGGAGATGGATCAGATGGAAATGGGGATGGAGAAGGATCTGATGGAGATGGAGATGGATCAGATGGGGGTGACATGAATCGAGTTGGGAAAGCATGCTCAAAGGACGACATAACAATCTTCCAAGGGGAAACGGCTCCACTCCCAAGTGGAATTCCGGCTTACACAGTTCAGATCCTCAACACGTGCGTCTCAGGTTGCAGCATCTCTGACATTCACATCAACTGTGGATGGTTTAGCTCCGCCCGCCTTGTCAATCCTAGAGTCTTCAGGCGCATGGACTACAACGACTGCCTAGTCAATGATGGTCAGCCTCTTGGCCCTGGACAAACCCTCTCTTTCCAATATGCCAATAGCTTTCGTTACCCTCTTTCTGTTTCGTCTGTAGCTTGTTAG

Protein Analysis

178

Amino Acids

18.59

Weight (kDa)

4.47

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 81 - 178 9.5e-43 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32583 AT1G32583
fragaria_vesca FvH4_3g00520
malus_domestica MD00G1057600.v1.1
prunus_persica Prupe.4G006300_v2.0.a1
pyrus_communis pycom05g32640
rosa_chinensis RchiOBHm_Chr5g0000721
rosa_laevigata RLG00000030889
rosa_multiflora Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii Rroxscaffold_1G00075510
rosa_rugosa Rorug04G0386100 Rorug04G0386100
rosa_samantha Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana Rw5G000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
AciI CCGC 3 cut(s) 90, 384, 388
AclWI GGATC 4 cut(s) 160, 187, 208, 310
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 394
AcvI CACGTG 1 cut(s) 327
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 324
AhdI GACNNNNNGTC 1 cut(s) 59
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 2 cut(s) 109, 463
AluBI AGCT 5 cut(s) 29, 121, 381, 498, 530
AluI AGCT 5 cut(s) 29, 121, 381, 498, 530
Alw26I GTCTC 2 cut(s) 46, 337
AlwI GGATC 4 cut(s) 160, 187, 208, 310
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 3 cut(s) 23, 26, 342
ApoI RAATTY 1 cut(s) 294
AspLEI GCGC 1 cut(s) 417
AspS9I GGNCC 2 cut(s) 101, 461
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 400
BbvI GCAGC 3 cut(s) 35, 38, 354
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 2 cut(s) 111, 465
BcoDI GTCTC 2 cut(s) 46, 337
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 3 cut(s) 56, 402, 437
BfmI CTRYAG 2 cut(s) 21, 525
BisI GCNGC 4 cut(s) 24, 27, 90, 343
BlsI GCNGC 4 cut(s) 25, 28, 91, 344
Bme1390I CCNGG 2 cut(s) 111, 465
Bme18I GGWCC 1 cut(s) 101
BmeRI GACNNNNNGTC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 101, 461
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 2 cut(s) 111, 465
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 69, 265, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 2 cut(s) 111, 465
BseDI CCNNGG 3 cut(s) 69, 265, 463
BseGI GGATG 2 cut(s) 175, 377
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 26, 348
BseXI GCAGC 3 cut(s) 35, 38, 354
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 46, 337
BsmBI CGTCTC 1 cut(s) 337
BsnI GGCC 1 cut(s) 462
Bsp143I GATC 4 cut(s) 152, 179, 200, 315
BspACI CCGC 3 cut(s) 90, 384, 388
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 2 cut(s) 25, 347
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 4 cut(s) 160, 187, 208, 310
BssECI CCNNGG 3 cut(s) 69, 265, 463
BssMI GATC 4 cut(s) 152, 179, 200, 315
BssT1I CCWWGG 2 cut(s) 69, 265
Bst2UI CCWGG 2 cut(s) 111, 465
Bst4CI ACNGT 2 cut(s) 310, 368
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 238, 388
BstDEI CTNAG 2 cut(s) 12, 334
BstF5I GGATG 2 cut(s) 175, 377
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 4 cut(s) 155, 182, 203, 318
BstMAI GTCTC 2 cut(s) 46, 337
BstMBI GATC 4 cut(s) 152, 179, 200, 315
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 2 cut(s) 111, 465
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 109, 463
BstSFI CTRYAG 2 cut(s) 21, 525
BstV1I GCAGC 3 cut(s) 35, 38, 354
BstV2I GAAGAC 1 cut(s) 400
BstX2I RGATCY 2 cut(s) 179, 315
BstYI RGATCY 2 cut(s) 179, 315
BsuRI GGCC 1 cut(s) 462
BtsCI GGATG 2 cut(s) 175, 377
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 238, 388
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 417
Cfr13I GGNCC 2 cut(s) 101, 461
CseI GACGC 1 cut(s) 319
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 217, 237, 418
CviJI RGCY 9 cut(s) 29, 121, 278, 302, 381, 454, 462, 498, 530
CviKI_1 RGCY 9 cut(s) 29, 121, 278, 302, 381, 454, 462, 498, 530
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 2 cut(s) 12, 334
DpnI GATC 4 cut(s) 154, 181, 202, 317
DpnII GATC 4 cut(s) 152, 179, 200, 315
DrdI GACNNNNNNGTC 1 cut(s) 437
DriI GACNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 437
Eam1105I GACNNNNNGTC 1 cut(s) 59
EciI GGCGGA 1 cut(s) 373
Eco130I CCWWGG 2 cut(s) 69, 265
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 394
Eco72I CACGTG 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 109, 463
EcoT14I CCWWGG 2 cut(s) 69, 265
ErhI CCWWGG 2 cut(s) 69, 265
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 3 cut(s) 220, 240, 421
FaiI YATR 5 cut(s) 218, 238, 254, 419, 489
FatI CATG 3 cut(s) 216, 236, 417
FauI CCCGC 1 cut(s) 395
Fnu4HI GCNGC 4 cut(s) 24, 27, 90, 343
FokI GGATG 2 cut(s) 182, 384
Fsp4HI GCNGC 4 cut(s) 24, 27, 90, 343
FspBI CTAG 3 cut(s) 56, 402, 437
GlaI GCGC 1 cut(s) 416
GluI GCNGC 4 cut(s) 24, 27, 90, 343
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 462
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 417
Hin1II CATG 3 cut(s) 220, 240, 421
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HinfI GANTC 2 cut(s) 220, 405
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 7 cut(s) 117, 136, 157, 184, 205, 315, 352
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 310, 368
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 3 cut(s) 23, 127, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 2 cut(s) 12, 334
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 3 cut(s) 220, 240, 421
HspAI GCGC 1 cut(s) 415
Kzo9I GATC 4 cut(s) 152, 179, 200, 315
LmnI GCTCC 2 cut(s) 283, 386
LpnPI CCDG 8 cut(s) 15, 96, 123, 312, 321, 397, 450, 477
Lsp1109I GCAGC 3 cut(s) 35, 38, 354
LweI GCATC 1 cut(s) 354
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 3 cut(s) 56, 402, 437
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 212, 503
MalI GATC 4 cut(s) 154, 181, 202, 317
MboI GATC 4 cut(s) 152, 179, 200, 315
MboII GAAGA 2 cut(s) 253, 400
MflI RGATCY 2 cut(s) 179, 315
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 414
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 5 cut(s) 114, 329, 465, 485, 519
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 111, 465
MvaI CCWGG 2 cut(s) 111, 465
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 4 cut(s) 152, 179, 200, 315
NlaIII CATG 3 cut(s) 220, 240, 421
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 240
PaeI GCATGC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 111
PkrI GCNGC 4 cut(s) 25, 28, 91, 344
PleI GAGTC 1 cut(s) 413
PmaCI CACGTG 1 cut(s) 327
PmlI CACGTG 1 cut(s) 327
PpsI GAGTC 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 109, 463
PspCI CACGTG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 2 cut(s) 109, 463
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 101, 461
PsrI GAACNNNNNNTAC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 2 cut(s) 179, 315
PsyI GACNNNGTC 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 4 cut(s) 24, 27, 90, 343
Sau3AI GATC 4 cut(s) 152, 179, 200, 315
Sau96I GGNCC 2 cut(s) 101, 461
SchI GAGTC 1 cut(s) 414
ScrFI CCNGG 2 cut(s) 111, 465
SetI ASST 9 cut(s) 31, 106, 112, 123, 329, 340, 383, 500, 532
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 2 cut(s) 21, 525
SinI GGWCC 1 cut(s) 101
SpeI ACTAGT 1 cut(s) 55
SphI GCATGC 1 cut(s) 240
Sse9I AATT 1 cut(s) 294
SsiI CCGC 3 cut(s) 90, 384, 388
SspMI CTAG 3 cut(s) 56, 402, 437
StyD4I CCNGG 2 cut(s) 109, 463
StyI CCWWGG 2 cut(s) 69, 265
TaaI ACNGT 2 cut(s) 310, 368
TaiI ACGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 106, 223
TasI AATT 1 cut(s) 294
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 23, 26, 342
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 294
XceI RCATGY 1 cut(s) 240
XspI CTAG 3 cut(s) 56, 402, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.