Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009547

Physical Location & Seq

Genomic Coordinates Forward (+)

11840910 .. 11843308

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGACTTCGTCACCGTCTCTGAGTAACAATGGTCTTTCCTCCGTCGTCACGCCTCCCAAAACTCTCCGTGGTCTCAATAAGCCTAAGTGTATTCAATGCGGCAATGTAGCTCGCTCCAGGTGCCCTTTTCAATCTTGTAAGGGTTGTTGTTCAAGAGCAGAGAATCCCTGCCCGATTCACGTTCTTAAAGTAGCTTCAACGTCTGGTGAGAAGACGCAGGCGCCAAGTACTCCATCTTCAGAGCAGAAAGCAACCGAGGGCACTCCCGGGAGTACCACTAGAGTTTCGTCAATCCGGCAACTTTCTAGCAACTTTGCTCAGTTTAATAACCTGAATGCTTCTTCCCGCCAGAGAAAACCTTTGACGATAAAGGATGCTCAAGCTTTAAACGAGTGGCGGTTTACAAAGCTAAAAGAGTACAGAGACAGAAACATTGAAGTAGAAAATGAAGCTTTTGATCGGTACATGAGTAATGTGAATTTACTCGAAGAAGCATTTTCATTTACATCTGTTCCTGATGAAGAGAGTCATGGAACAGCAGCTCCTGAGCAAAACAAAGAGGAAAATATTGTTTCAGAGCTTAAACTGAGGCTGAGATCGAACTCTGCAAGAACAGAGAGCTTTAAGAAGCGGATCGCGGAGACAGTCAAAGCCGGTTTGGTGAAGCTTAAGAGACTGGATTTAGGCAGTTCTTCAGATGATCAAGATGATATCAAAAGGCGGGTCAAAAGAAAGAAATGGGAAGAGAAAGGTTCAGCTTTGAATGAAATAATCGATAAACTGAACAAAGCAAGAACCGAAGAGGATCTCAAATCTTGCTTAGAGATGAAATCAAAGCTCTGTGGTCAAGTTTCTCCCACTGCTGCTTCCGAGAAGAACAAGATCTTTCCGGGTGTAGTCCGAAAAGTTGAGATGAGTGAAGAAGCACTTCAAAAAATCGCTGAGAATCTCCAATCTTTTGACAAAGTTGGAATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

327

Amino Acids

36.33

Weight (kDa)

9.31

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32730
fragaria_vesca	FvH4_5g20870
malus_domestica	MD06G1043400.v1.1 MD16G1267400.v1.1
prunus_persica	Prupe.5G050200_v2.0.a1
pyrus_communis	pycom06g03630 pycom06g03640 pycom16g23690
rosa_chinensis	RchiOBHm_Chr7g0207891
rosa_laevigata	RLG00000003278
rosa_multiflora	Rmu_co7991772.1_g000001 Rmu_sc0006577.1_g000002 Rmu_ssc0000451.1_g000023
rosa_roxburghii	Rroxscaffold_3G00251070
rosa_rugosa	Rorug07G0100100
rosa_samantha	Rh2CG132500 Rh7AG233300 Rh7AG233400 Rh7BG229000 Rh7CG248700 Rh7DG239400
rosa_wichuraiana	Rw7G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	123, 223
AccII	CGCG	1 cut(s)	641
AciI	CCGC	6 cut(s)	102, 349, 400, 634, 641, 724
AclWI	GGATC	2 cut(s)	644, 816
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	2 cut(s)	225, 681
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	4 cut(s)	232, 277, 422, 467
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	7 cut(s)	98, 134, 156, 201, 440, 766, 935
AjnI	CCWGG	1 cut(s)	119
AloI	GAACNNNNNNTCC	2 cut(s)	529, 561
Alw26I	GTCTC	5 cut(s)	24, 80, 420, 638, 670
AlwI	GGATC	2 cut(s)	644, 816
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	542, 866
ApoI	RAATTY	1 cut(s)	481
ArsI	GACNNNNNNTTYG	2 cut(s)	711, 743
Asp700I	GAANNNNTTC	1 cut(s)	930
AspLEI	GCGC	1 cut(s)	226
AsuC2I	CCSGG	3 cut(s)	270, 271, 894
AsuHPI	GGTGA	3 cut(s)	6, 221, 676
AvaI	CYCGRG	1 cut(s)	269
BaeGI	GKGCMC	2 cut(s)	128, 266
BaeI	ACNNNNGTAYC	2 cut(s)	457, 490
BanI	GGYRCC	2 cut(s)	123, 223
BarI	GAAGNNNNNNTAC	2 cut(s)	223, 255
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	554, 853
BccI	CCATC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	121
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	3 cut(s)	270, 271, 894
BcoDI	GTCTC	5 cut(s)	24, 80, 420, 638, 670
BfaI	CTAG	2 cut(s)	282, 309
BfoI	RGCGCY	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	671
BglII	AGATCT	1 cut(s)	885
BisI	GCNGC	3 cut(s)	103, 543, 867
BlsI	GCNGC	3 cut(s)	104, 544, 868
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	4 cut(s)	121, 270, 271, 894
BmeT110I	CYCGRG	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	125, 225
BmrFI	CCNGG	4 cut(s)	121, 270, 271, 894
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	3 cut(s)	270, 271, 894
Bsa29I	ATCGAT	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	70, 258, 269
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	1 cut(s)	684
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	3 cut(s)	70, 258, 269
BseGI	GGATG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	6 cut(s)	14, 335, 540, 581, 587, 936
BseNI	ACTGG	1 cut(s)	684
BseSI	GKGCMC	2 cut(s)	128, 266
BseXI	GCAGC	2 cut(s)	554, 853
Bsh1236I	CGCG	1 cut(s)	641
BshNI	GGYRCC	2 cut(s)	123, 223
BshVI	ATCGAT	1 cut(s)	777
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	270, 298, 657, 893
BsmAI	GTCTC	5 cut(s)	24, 80, 420, 638, 670
BsmBI	CGTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	128, 266
Bsp143I	GATC	6 cut(s)	460, 599, 636, 703, 808, 885
BspACI	CCGC	6 cut(s)	102, 349, 400, 634, 641, 724
BspCNI	CTCAG	6 cut(s)	15, 334, 541, 582, 588, 937
BspDI	ATCGAT	1 cut(s)	777
BspFNI	CGCG	1 cut(s)	641
BspLI	GGNNCC	2 cut(s)	125, 225
BspPI	GGATC	2 cut(s)	644, 816
BspT107I	GGYRCC	2 cut(s)	123, 223
BspTI	CTTAAG	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	684
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	3 cut(s)	70, 258, 269
BssMI	GATC	6 cut(s)	460, 599, 636, 703, 808, 885
BssNI	GRCGYC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	18, 649
Bst6I	CTCTTC	3 cut(s)	519, 741, 798
BstACI	GRCGYC	1 cut(s)	224
BstAFI	CTTAAG	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	115, 222
BstDEI	CTNAG	8 cut(s)	23, 87, 321, 549, 590, 596, 823, 945
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	641
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	6 cut(s)	463, 602, 639, 706, 811, 888
BstMAI	GTCTC	5 cut(s)	24, 80, 420, 638, 670
BstMBI	GATC	6 cut(s)	460, 599, 636, 703, 808, 885
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	4 cut(s)	119, 268, 269, 892
BstSLI	GKGCMC	2 cut(s)	128, 266
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	2 cut(s)	554, 853
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	808, 885
BstYI	RGATCY	2 cut(s)	808, 885
Bsu15I	ATCGAT	1 cut(s)	777
BsuTUI	ATCGAT	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	1 cut(s)	861
Cac8I	GCNNGC	2 cut(s)	115, 222
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	656
Cfr9I	CCCGGG	1 cut(s)	269
ClaI	ATCGAT	1 cut(s)	777
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	4 cut(s)	231, 276, 421, 466
CviAII	CATG	2 cut(s)	469, 533
CviQI	GTAC	4 cut(s)	231, 276, 421, 466
DdeI	CTNAG	8 cut(s)	23, 87, 321, 549, 590, 596, 823, 945
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	6 cut(s)	462, 601, 638, 705, 810, 887
DpnII	GATC	6 cut(s)	460, 599, 636, 703, 808, 885
DraI	TTTAAA	1 cut(s)	390
Eam1104I	CTCTTC	3 cut(s)	519, 741, 798
EarI	CTCTTC	3 cut(s)	519, 741, 798
Eco31I	GGTCTC	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	225, 681
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	715
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	2 cut(s)	472, 536
FaiI	YATR	2 cut(s)	470, 534
FalI	AAGNNNNNCTT	2 cut(s)	915, 947
FatI	CATG	2 cut(s)	468, 532
FauI	CCCGC	2 cut(s)	356, 717
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	3 cut(s)	103, 543, 867
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	103, 543, 867
FspBI	CTAG	2 cut(s)	282, 309
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	3 cut(s)	103, 543, 867
GsuI	CTGGAG	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	227
HapII	CCGG	4 cut(s)	270, 298, 657, 893
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	472, 536
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HindIII	AAGCTT	3 cut(s)	384, 453, 668
HinfI	GANTC	4 cut(s)	166, 178, 529, 949
HpaII	CCGG	4 cut(s)	270, 298, 657, 893
HphI	GGTGA	3 cut(s)	6, 221, 676
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	6 cut(s)	24, 244, 580, 700, 874, 905
Hpy188III	TCNNGA	4 cut(s)	156, 518, 548, 707
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	18, 649
HpyCH4IV	ACGT	2 cut(s)	183, 203
HpyCH4V	TGCA	1 cut(s)	611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	8 cut(s)	23, 87, 321, 549, 590, 596, 823, 945
HpySE526I	ACGT	2 cut(s)	183, 203
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	472, 536
HspAI	GCGC	1 cut(s)	224
KasI	GGCGCC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	6 cut(s)	460, 599, 636, 703, 808, 885
LmnI	GCTCC	2 cut(s)	122, 550
Lsp1109I	GCAGC	2 cut(s)	554, 853
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	282, 309
MaeII	ACGT	2 cut(s)	183, 203
MaeIII	GTNAC	3 cut(s)	12, 26, 49
MalI	GATC	6 cut(s)	462, 601, 638, 705, 810, 887
MboI	GATC	6 cut(s)	460, 599, 636, 703, 808, 885
MflI	RGATCY	2 cut(s)	808, 885
MhlI	GDGCHC	2 cut(s)	128, 266
MluCI	AATT	1 cut(s)	481
Mly113I	GGCGCC	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	952
MnlI	CCTC	6 cut(s)	52, 66, 253, 556, 585, 799
MroXI	GAANNNNTTC	1 cut(s)	930
MseI	TTAA	6 cut(s)	189, 327, 389, 585, 627, 672
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	4 cut(s)	270, 298, 657, 893
MspR9I	CCNGG	4 cut(s)	121, 270, 271, 894
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	1 cut(s)	123
NarI	GGCGCC	1 cut(s)	224
NciI	CCSGG	3 cut(s)	270, 271, 894
NdeII	GATC	6 cut(s)	460, 599, 636, 703, 808, 885
NlaIII	CATG	2 cut(s)	472, 536
NlaIV	GGNNCC	2 cut(s)	125, 225
NmuCI	GTSAC	2 cut(s)	12, 49
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	930
PfeI	GAWTC	3 cut(s)	166, 178, 949
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	104, 544, 868
PleI	GAGTC	1 cut(s)	537
PluTI	GGCGCC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	125, 225
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	808, 885
PsyI	GACNNNGTC	1 cut(s)	10
RsaI	GTAC	4 cut(s)	232, 277, 422, 467
RsaNI	GTAC	4 cut(s)	231, 276, 421, 466
SaqAI	TTAA	6 cut(s)	189, 327, 389, 585, 627, 672
SatI	GCNGC	3 cut(s)	103, 543, 867
Sau3AI	GATC	6 cut(s)	460, 599, 636, 703, 808, 885
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	4 cut(s)	121, 270, 271, 894
SduI	GDGCHC	2 cut(s)	128, 266
SfaNI	GCATC	1 cut(s)	367
SfoI	GGCGCC	1 cut(s)	225
SmaI	CCCGGG	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	381, 671
SmoI	CTYRAG	2 cut(s)	381, 671
Sse9I	AATT	1 cut(s)	481
SsiI	CCGC	6 cut(s)	102, 349, 400, 634, 641, 724
SspDI	GGCGCC	1 cut(s)	223
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	2 cut(s)	282, 309
StyD4I	CCNGG	4 cut(s)	119, 268, 269, 892
TaaI	ACNGT	2 cut(s)	18, 649
TaiI	ACGT	2 cut(s)	186, 206
TaqI	TCGA	3 cut(s)	489, 602, 777
TasI	AATT	1 cut(s)	481
TatI	WGTACW	2 cut(s)	230, 420
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	3 cut(s)	166, 178, 949
Tru1I	TTAA	6 cut(s)	189, 327, 389, 585, 627, 672
Tru9I	TTAA	6 cut(s)	189, 327, 389, 585, 627, 672
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	2 cut(s)	12, 49
TseI	GCWGC	2 cut(s)	542, 866
Tsp45I	GTSAC	2 cut(s)	12, 49
TspDTI	ATGAA	5 cut(s)	465, 492, 537, 783, 845
TspGWI	ACGGA	2 cut(s)	34, 59
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	1 cut(s)	868
Tth111I	GACNNNGTC	1 cut(s)	10
Vha464I	CTTAAG	1 cut(s)	671
XapI	RAATTY	1 cut(s)	481
XmaI	CCCGGG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	930
XspI	CTAG	2 cut(s)	282, 309
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.