Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009547

Physical Location & Seq

Genomic Coordinates Reverse (-)

11805761 .. 11806969

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG132500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATATGCAACCAAACTCCACCAGCCCGACCCGACCGCCAGTTGCCATTCCAATCCTTCACGCTGATTAACAGAAGCAGTCAACCATCCTTGATCTGTAACCTTACTCTCCTCGCTGCCAATCTCCCCAAGCGACTGGAACTAGATCGCGTTGGCCTACTAGAATTGGAACTGAATCTCTCTGACGCACTATGCCATTTCGTGACTAGATCTCTAACGCACGAACTGGATCTCCGCATCAACAGCTCTGATGCATCTCATGCGGCCACTGCCGCCGTTCCTGCTCCGCCATTCGCAGCAATTTTTCGCTCTGAAAAGCCGACCAAGACGCTTCGCGGCCCTAACAAGCTCGAGTGCAAGGTATCCGGCGAGGTCTCCGGCGTTCACCGTCACAGCGTTCATCACCCAACCGCCTCCATTGCTAGACTCTTTGATTTCACTGGCTATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.52

Weight (kDa)

8.84

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32730
fragaria_vesca	FvH4_5g20870
malus_domestica	MD06G1043400.v1.1 MD16G1267400.v1.1
prunus_persica	Prupe.5G050200_v2.0.a1
pyrus_communis	pycom06g03630 pycom06g03640 pycom16g23690
rosa_chinensis	RchiOBHm_Chr7g0207891
rosa_laevigata	RLG00000003278
rosa_multiflora	Rmu_co7991772.1_g000001 Rmu_sc0006577.1_g000002 Rmu_ssc0000451.1_g000023
rosa_roxburghii	Rroxscaffold_3G00251070
rosa_rugosa	Rorug07G0100100
rosa_samantha	Rh2CG132500 Rh7AG233300 Rh7AG233400 Rh7BG229000 Rh7CG248700 Rh7DG239400
rosa_wichuraiana	Rw7G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	150, 336
AciI	CCGC	7 cut(s)	37, 235, 263, 273, 287, 336, 411
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	264
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	2 cut(s)	246, 349
AluI	AGCT	2 cut(s)	246, 349
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	237
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	154, 264, 337
ApeKI	GCWGC	2 cut(s)	116, 296
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	377, 395
AvaI	CYCGRG	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	103, 308
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	4 cut(s)	143, 161, 207, 423
BfmI	CTRYAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	5 cut(s)	117, 264, 273, 297, 337
BlsI	GCNGC	5 cut(s)	118, 265, 274, 298, 338
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	338
BmsI	GCATC	3 cut(s)	241, 246, 263
BsaI	GGTCTC	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bse1I	ACTGG	4 cut(s)	40, 141, 231, 445
Bse3DI	GCAATG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	417
BseNI	ACTGG	4 cut(s)	40, 141, 231, 445
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	103, 308
Bsh1236I	CGCG	2 cut(s)	150, 336
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	156, 266, 339
BsiEI	CGRYCG	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	366, 378
BsmAI	GTCTC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	156, 266, 339
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	350
Bsp143I	GATC	4 cut(s)	93, 145, 209, 229
BspACI	CCGC	7 cut(s)	37, 235, 263, 273, 287, 336, 411
BspANI	GGCC	3 cut(s)	156, 266, 339
BspFNI	CGCG	2 cut(s)	150, 336
BspPI	GGATC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	4 cut(s)	40, 141, 231, 445
BssMI	GATC	4 cut(s)	93, 145, 209, 229
Bst4CI	ACNGT	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	150, 336
BstKTI	GATC	4 cut(s)	96, 148, 212, 232
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	4 cut(s)	93, 145, 209, 229
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	6 cut(s)	243, 260, 269, 272, 281, 419
BstSFI	CTRYAG	1 cut(s)	449
BstUI	CGCG	2 cut(s)	150, 336
BstV1I	GCAGC	2 cut(s)	103, 308
BstX2I	RGATCY	2 cut(s)	209, 229
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	2 cut(s)	209, 229
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	156, 266, 339
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	267, 438
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	2 cut(s)	194, 337
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	8 cut(s)	26, 156, 246, 266, 319, 339, 349, 444
CviKI_1	RGCY	8 cut(s)	26, 156, 246, 266, 319, 339, 349, 444
DpnI	GATC	4 cut(s)	95, 147, 211, 231
DpnII	GATC	4 cut(s)	93, 145, 209, 229
EaeI	YGGCCR	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	256
FaeI	CATG	1 cut(s)	263
FaiI	YATR	3 cut(s)	7, 193, 261
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	117, 264, 273, 297, 337
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	5 cut(s)	117, 264, 273, 297, 337
FspBI	CTAG	4 cut(s)	143, 161, 207, 423
GluI	GCNGC	5 cut(s)	117, 264, 273, 297, 337
HaeIII	GGCC	3 cut(s)	156, 266, 339
HapII	CCGG	2 cut(s)	366, 378
HgaI	GACGC	2 cut(s)	194, 337
Hin1II	CATG	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	175, 426
HpaII	CCGG	2 cut(s)	366, 378
HphI	GGTGA	2 cut(s)	377, 395
Hpy166II	GTNNAC	2 cut(s)	83, 385
Hpy188I	TCNGA	3 cut(s)	184, 250, 313
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	2 cut(s)	83, 385
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	9, 254, 357
HpyF10VI	GCNNNNNNNGC	6 cut(s)	243, 260, 269, 272, 281, 419
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	4 cut(s)	93, 145, 209, 229
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	8 cut(s)	36, 53, 122, 212, 294, 379, 391, 426
Lsp1109I	GCAGC	2 cut(s)	103, 308
LweI	GCATC	3 cut(s)	241, 246, 263
MaeI	CTAG	4 cut(s)	143, 161, 207, 423
MaeIII	GTNAC	3 cut(s)	98, 202, 389
MalI	GATC	4 cut(s)	95, 147, 211, 231
MboI	GATC	4 cut(s)	93, 145, 209, 229
MflI	RGATCY	2 cut(s)	209, 229
MluCI	AATT	2 cut(s)	164, 300
MlyI	GAGTC	1 cut(s)	420
MnlI	CCTC	3 cut(s)	122, 364, 424
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	1 cut(s)	69
MspI	CCGG	2 cut(s)	366, 378
MvnI	CGCG	2 cut(s)	150, 336
MwoI	GCNNNNNNNGC	6 cut(s)	243, 260, 269, 272, 281, 419
NdeII	GATC	4 cut(s)	93, 145, 209, 229
NlaIII	CATG	1 cut(s)	263
NmuCI	GTSAC	2 cut(s)	202, 389
NsiI	ATGCAT	1 cut(s)	256
PaeR7I	CTCGAG	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	118, 265, 274, 298, 338
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	338
PspXI	VCTCGAGB	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	209, 229
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	5 cut(s)	117, 264, 273, 297, 337
Sau3AI	GATC	4 cut(s)	93, 145, 209, 229
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	420
SetI	ASST	5 cut(s)	105, 248, 351, 363, 375
SfaNI	GCATC	3 cut(s)	241, 246, 263
SfcI	CTRYAG	1 cut(s)	449
Sfr274I	CTCGAG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	164, 300
SsiI	CCGC	7 cut(s)	37, 235, 263, 273, 287, 336, 411
SspMI	CTAG	4 cut(s)	143, 161, 207, 423
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	164, 300
TauI	GCSGC	3 cut(s)	266, 275, 339
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	274, 445
TseFI	GTSAC	2 cut(s)	202, 389
TseI	GCWGC	2 cut(s)	116, 296
Tsp45I	GTSAC	2 cut(s)	202, 389
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	274, 445
XhoI	CTCGAG	1 cut(s)	350
XspI	CTAG	4 cut(s)	143, 161, 207, 423
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.