Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009547

Physical Location & Seq

Genomic Coordinates Reverse (-)

34263546 .. 34268747

Gene Structure 5202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1267400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCAGCTGCTCCTTCGCCCTCGCCTGCCCTAAGCAATACCAGCTCCGGCGACACTCGCCCCACCACCACCGCCACGGCTGCCTCGCCTCCCGTCGCTCCCTTCCATCCGGTGCACCGTACCGACACGCCCCCCAAGACCCTTCGCGGCCTTAACAAGCCCAAGTGTAAGCAGTGCGGCAATGTCGCTCGCTCCAGGTGCCCATACGAGTCATGCAAGAGTTGCTGCTCAAAAGCTCAAAATCCATGTCATATTCATGTTTTGAAAACAAATGCAACTTTTCCAGACAAGGCACTAACCTCAAACTCTCCTCTATTTAACCATCAATCAACCGATGCATCACCATCAGGGAATTCCCATAGAGTTGCATCATTCCGGCAACCTTCGATCAATTTTGCTCAATTCAATAATCTGCATATTCCGCTTCGTTCGAAGAAGCCTTTGACCAGAAAGGATGCTGTGGCTATTAATGAGTGGAGATTTTCCAAGTTGAGGGAATACAAGGATGGAAACATTGAAGTGGAAAATGAAGCTTTTGATCGATACATGCAGAACGTCAGCCTATTAGAGCAAGTGTTTTCTGTGGAATCTATTGCAGAGGAGTCAATGAGGGATGGATCATCCAGATCAAACCAAAATACTATTACTAATACTACAGAAGATGACACTGAGGCTATGGTGTCAGGGCTGAAGTTGAAGTTGAGGTCAAATCCAATGAGAACCAGTAACTTCCGAAAGAGGATACAGCAAATTGTTGACGAGGGACTAAAGAAGCTTAAGAAATGCGAGTTTGATGACGGGGTCAAGAAATCAAGTGTGCCAAATGGATTGGATAAAGGGCCCAAAAAAGAAGAAACACGGTGGGCTGGAAGGACTTCTGCTTTAGGCGATCTCATTGATAAGCTGAACAAAGCCCGAAACAAGGAGGATTTGAAGGCATGCTTGGAGTTGAAATCTCAGCTCTTCAGTGAACACAAATTGACTGGTAGAACAGAATCGGGAGACGCTGACATAATGAAGAAACAGACTGCAAAGAATGATTCGGAGCCCGGAAAGGAGTGGAATTGTTCTTTTCCTAAAGTGATTAGTGCTACCGAAATTGATCAAGAAACTCTGAAAAGTGTTAATGCACACTTCTCTACCCTTGAGCAGATAGAAGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

389

Amino Acids

43.04

Weight (kDa)

9.16

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32730
fragaria_vesca	FvH4_5g20870
malus_domestica	MD06G1043400.v1.1 MD16G1267400.v1.1
prunus_persica	Prupe.5G050200_v2.0.a1
pyrus_communis	pycom06g03630 pycom06g03640 pycom16g23690
rosa_chinensis	RchiOBHm_Chr7g0207891
rosa_laevigata	RLG00000003278
rosa_multiflora	Rmu_co7991772.1_g000001 Rmu_sc0006577.1_g000002 Rmu_ssc0000451.1_g000023
rosa_roxburghii	Rroxscaffold_3G00251070
rosa_rugosa	Rorug07G0100100
rosa_samantha	Rh2CG132500 Rh7AG233300 Rh7AG233400 Rh7BG229000 Rh7CG248700 Rh7DG239400
rosa_wichuraiana	Rw7G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	72, 147, 177, 422
AclWI	GGATC	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	2 cut(s)	710, 949
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	2 cut(s)	492, 922
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	6 cut(s)	265, 406, 518, 697, 934, 952
AjnI	CCWGG	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AluBI	AGCT	7 cut(s)	8, 45, 236, 533, 775, 904, 961
AluI	AGCT	7 cut(s)	8, 45, 236, 533, 775, 904, 961
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	996
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	625
AoxI	GGCC	2 cut(s)	148, 839
ApaI	GGGCCC	1 cut(s)	843
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	5, 8, 80, 225
ApoI	RAATTY	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AseI	ATTAAT	1 cut(s)	468
Asp700I	GAANNNNTTC	1 cut(s)	874
AspS9I	GGNCC	2 cut(s)	839, 840
AsuC2I	CCSGG	1 cut(s)	1050
AsuHPI	GGTGA	1 cut(s)	333
AsuII	TTCGAA	1 cut(s)	431
BaeGI	GKGCMC	3 cut(s)	117, 203, 843
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	2 cut(s)	843, 1050
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	17, 67, 212
BccI	CCATC	5 cut(s)	114, 330, 352, 500, 608
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	735
BclI	TGATCA	1 cut(s)	1102
BcnI	CCSGG	1 cut(s)	1050
BcoDI	GTCTC	1 cut(s)	996
BfmI	CTRYAG	1 cut(s)	654
BfrI	CTTAAG	1 cut(s)	776
BfuI	GTATCC	1 cut(s)	735
BisI	GCNGC	6 cut(s)	6, 9, 81, 148, 178, 226
BlsI	GCNGC	6 cut(s)	7, 10, 82, 149, 179, 227
Bme1390I	CCNGG	2 cut(s)	196, 1050
BmgT120I	GGNCC	2 cut(s)	839, 840
BmiI	GGNNCC	3 cut(s)	200, 841, 1047
BmrFI	CCNGG	2 cut(s)	196, 1050
BmsI	GCATC	4 cut(s)	325, 347, 377, 445
BpmI	CTGGAG	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	1166
BpuMI	CCSGG	1 cut(s)	1050
Bsa29I	ATCGAT	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	492, 922
Bse1I	ACTGG	2 cut(s)	723, 988
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	196
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	5 cut(s)	106, 460, 511, 619, 620
BseLI	CCNNNNNNNGG	2 cut(s)	492, 922
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	660, 971
BseNI	ACTGG	2 cut(s)	723, 988
BseRI	GAGGAG	2 cut(s)	300, 614
BseSI	GKGCMC	3 cut(s)	117, 203, 843
BseXI	GCAGC	3 cut(s)	17, 67, 212
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	150, 841
BshNI	GGYRCC	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	4 cut(s)	48, 110, 376, 1050
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	2 cut(s)	492, 922
BsmAI	GTCTC	1 cut(s)	996
BsmBI	CGTCTC	1 cut(s)	996
BsmFI	GGGAC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	150, 841
Bsp119I	TTCGAA	1 cut(s)	431
Bsp120I	GGGCCC	1 cut(s)	839
Bsp1286I	GDGCHC	4 cut(s)	117, 203, 843, 1050
Bsp143I	GATC	6 cut(s)	387, 538, 617, 626, 889, 1102
BspACI	CCGC	4 cut(s)	72, 147, 177, 422
BspANI	GGCC	2 cut(s)	150, 841
BspCNI	CTCAG	2 cut(s)	661, 970
BspDI	ATCGAT	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	200, 841, 1047
BspPI	GGATC	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	968
BspT104I	TTCGAA	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	723, 988
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	6 cut(s)	387, 538, 617, 626, 889, 1102
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	119, 861
Bst6I	CTCTTC	1 cut(s)	968
BstAFI	CTTAAG	1 cut(s)	776
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	27, 190, 940
BstDEI	CTNAG	3 cut(s)	32, 669, 957
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	5 cut(s)	106, 460, 511, 619, 620
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	6 cut(s)	390, 541, 620, 629, 892, 1105
BstMAI	GTCTC	1 cut(s)	996
BstMBI	GATC	6 cut(s)	387, 538, 617, 626, 889, 1102
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 57, 80, 198, 222, 421
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	2 cut(s)	550, 942
BstSCI	CCNGG	2 cut(s)	194, 1048
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	3 cut(s)	117, 203, 843
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	17, 67, 212
Bsu15I	ATCGAT	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	150, 841
BsuTUI	ATCGAT	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	5 cut(s)	106, 460, 511, 619, 620
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	3 cut(s)	179, 666, 973
Cac8I	GCNNGC	3 cut(s)	27, 190, 940
Cfr13I	GGNCC	2 cut(s)	839, 840
ClaI	ATCGAT	1 cut(s)	541
CseI	GACGC	1 cut(s)	1013
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	5 cut(s)	213, 246, 257, 547, 939
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	3 cut(s)	32, 669, 957
DpnI	GATC	6 cut(s)	389, 540, 619, 628, 891, 1104
DpnII	GATC	6 cut(s)	387, 538, 617, 626, 889, 1102
Eam1104I	CTCTTC	1 cut(s)	968
EarI	CTCTTC	1 cut(s)	968
Eco24I	GRGCYC	2 cut(s)	843, 1050
Eco57I	CTGAAG	2 cut(s)	710, 949
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	194
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	2 cut(s)	843, 1050
Esp3I	CGTCTC	1 cut(s)	996
FaeI	CATG	5 cut(s)	216, 249, 260, 550, 942
FalI	AAGNNNNNCTT	2 cut(s)	926, 958
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	5 cut(s)	212, 245, 256, 546, 938
FbaI	TGATCA	1 cut(s)	1102
Fnu4HI	GCNGC	6 cut(s)	6, 9, 81, 148, 178, 226
FokI	GGATG	5 cut(s)	93, 467, 518, 607, 626
FriOI	GRGCYC	2 cut(s)	843, 1050
Fsp4HI	GCNGC	6 cut(s)	6, 9, 81, 148, 178, 226
GluI	GCNGC	6 cut(s)	6, 9, 81, 148, 178, 226
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	150, 841
HapII	CCGG	4 cut(s)	48, 110, 376, 1050
HgaI	GACGC	1 cut(s)	1013
Hin1II	CATG	5 cut(s)	216, 249, 260, 550, 942
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	2 cut(s)	531, 773
HinfI	GANTC	5 cut(s)	209, 587, 602, 995, 1040
HpaII	CCGG	4 cut(s)	48, 110, 376, 1050
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	3 cut(s)	115, 757, 971
Hpy188I	TCNGA	3 cut(s)	734, 1045, 1116
Hpy188III	TCNNGA	5 cut(s)	284, 624, 805, 999, 1106
Hpy8I	GTNNAC	3 cut(s)	115, 757, 971
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	7 cut(s)	24, 112, 152, 393, 864, 928, 1151
HpyCH4III	ACNGT	2 cut(s)	119, 861
HpyCH4IV	ACGT	1 cut(s)	555
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 57, 80, 198, 222, 421
HpyF3I	CTNAG	3 cut(s)	32, 669, 957
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	5 cut(s)	216, 249, 260, 550, 942
Ksp22I	TGATCA	1 cut(s)	1102
Kzo9I	GATC	6 cut(s)	387, 538, 617, 626, 889, 1102
LguI	GCTCTTC	1 cut(s)	968
LmnI	GCTCC	5 cut(s)	16, 50, 103, 197, 1045
Lsp1109I	GCAGC	3 cut(s)	17, 67, 212
LweI	GCATC	4 cut(s)	325, 347, 377, 445
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	6 cut(s)	389, 540, 619, 628, 891, 1104
MboI	GATC	6 cut(s)	387, 538, 617, 626, 889, 1102
MboII	GAAGA	5 cut(s)	445, 671, 863, 955, 1030
MhlI	GDGCHC	4 cut(s)	117, 203, 843, 1050
MluCI	AATT	7 cut(s)	352, 391, 401, 750, 977, 1063, 1098
MlyI	GAGTC	2 cut(s)	218, 611
Mph1103I	ATGCAT	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	874
MseI	TTAA	5 cut(s)	153, 318, 468, 777, 1125
MslI	CAYNNNNRTG	2 cut(s)	255, 518
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	4 cut(s)	48, 110, 376, 1050
MspR9I	CCNGG	2 cut(s)	196, 1050
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	6 cut(s)	42, 57, 80, 198, 222, 421
NciI	CCSGG	1 cut(s)	1050
NdeII	GATC	6 cut(s)	387, 538, 617, 626, 889, 1102
NlaIII	CATG	5 cut(s)	216, 249, 260, 550, 942
NlaIV	GGNNCC	3 cut(s)	200, 841, 1047
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	2 cut(s)	550, 942
NspV	TTCGAA	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	942
PciSI	GCTCTTC	1 cut(s)	968
PdmI	GAANNNNTTC	1 cut(s)	874
PfeI	GAWTC	3 cut(s)	587, 995, 1040
PflFI	GACNNNGTC	1 cut(s)	800
PkrI	GCNGC	6 cut(s)	7, 10, 82, 149, 179, 227
PleI	GAGTC	2 cut(s)	217, 610
PpsI	GAGTC	2 cut(s)	217, 610
PshBI	ATTAAT	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	200, 841, 1047
PspOMI	GGGCCC	1 cut(s)	839
PspPI	GGNCC	2 cut(s)	839, 840
PsyI	GACNNNGTC	1 cut(s)	800
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	2 cut(s)	255, 518
SapI	GCTCTTC	1 cut(s)	968
SaqAI	TTAA	5 cut(s)	153, 318, 468, 777, 1125
SatI	GCNGC	6 cut(s)	6, 9, 81, 148, 178, 226
Sau3AI	GATC	6 cut(s)	387, 538, 617, 626, 889, 1102
Sau96I	GGNCC	2 cut(s)	839, 840
SchI	GAGTC	2 cut(s)	218, 611
ScrFI	CCNGG	2 cut(s)	196, 1050
SduI	GDGCHC	4 cut(s)	117, 203, 843, 1050
SfaNI	GCATC	4 cut(s)	325, 347, 377, 445
SfcI	CTRYAG	1 cut(s)	654
SfuI	TTCGAA	1 cut(s)	431
SmiMI	CAYNNNNRTG	2 cut(s)	255, 518
SmlI	CTYRAG	2 cut(s)	776, 1145
SmoI	CTYRAG	2 cut(s)	776, 1145
SphI	GCATGC	1 cut(s)	942
Sse9I	AATT	7 cut(s)	352, 391, 401, 750, 977, 1063, 1098
SsiI	CCGC	4 cut(s)	72, 147, 177, 422
StyD4I	CCNGG	2 cut(s)	194, 1048
TaaI	ACNGT	2 cut(s)	119, 861
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	3 cut(s)	386, 431, 541
TasI	AATT	7 cut(s)	352, 391, 401, 750, 977, 1063, 1098
TauI	GCSGC	2 cut(s)	150, 180
TfiI	GAWTC	3 cut(s)	587, 995, 1040
Tru1I	TTAA	5 cut(s)	153, 318, 468, 777, 1125
Tru9I	TTAA	5 cut(s)	153, 318, 468, 777, 1125
TscAI	CASTG	3 cut(s)	179, 673, 973
TseI	GCWGC	4 cut(s)	5, 8, 80, 225
TspDTI	ATGAA	3 cut(s)	245, 543, 1031
TspRI	CASTG	3 cut(s)	179, 673, 973
Tth111I	GACNNNGTC	1 cut(s)	800
Vha464I	CTTAAG	1 cut(s)	776
VneI	GTGCAC	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	2 cut(s)	550, 942
XmnI	GAANNNNTTC	1 cut(s)	874
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.